Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2089

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2087 and Pf6N2E2_2088 overlap by 1 nucleotidesPf6N2E2_2088 and Pf6N2E2_2089 are separated by 80 nucleotidesPf6N2E2_2089 and Pf6N2E2_2090 are separated by 206 nucleotides Pf6N2E2_2087 - RecA/RadA recombinase, at 2,483,168 to 2,483,800 _2087 Pf6N2E2_2088 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 2,483,800 to 2,484,417 _2088 Pf6N2E2_2089 - Transcriptional regulator, AraC family, at 2,484,498 to 2,485,541 _2089 Pf6N2E2_2090 - Protein involved in meta-pathway of phenol degradation, at 2,485,748 to 2,486,692 _2090 Position (kb) 2484 2485 2486Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2483.837 kb on - strandat 2484.065 kb on + strand, within Pf6N2E2_2088at 2484.065 kb on + strand, within Pf6N2E2_2088at 2484.998 kb on - strand, within Pf6N2E2_2089at 2484.998 kb on - strand, within Pf6N2E2_2089at 2484.998 kb on - strand, within Pf6N2E2_2089at 2484.998 kb on - strand, within Pf6N2E2_2089at 2485.066 kb on + strand, within Pf6N2E2_2089at 2485.067 kb on - strand, within Pf6N2E2_2089at 2485.067 kb on - strand, within Pf6N2E2_2089at 2485.067 kb on - strand, within Pf6N2E2_2089at 2485.254 kb on + strand, within Pf6N2E2_2089at 2485.255 kb on - strand, within Pf6N2E2_2089at 2485.255 kb on - strand, within Pf6N2E2_2089at 2485.483 kb on - strandat 2485.513 kb on + strandat 2485.514 kb on - strandat 2485.563 kb on + strandat 2485.563 kb on + strandat 2485.564 kb on - strandat 2485.564 kb on - strandat 2485.564 kb on - strandat 2485.564 kb on - strandat 2485.653 kb on + strandat 2485.653 kb on + strandat 2485.666 kb on - strandat 2485.693 kb on + strandat 2485.699 kb on + strandat 2485.699 kb on + strandat 2485.700 kb on - strandat 2485.700 kb on - strandat 2485.731 kb on + strandat 2485.731 kb on + strandat 2485.731 kb on + strandat 2485.732 kb on - strandat 2485.732 kb on - strandat 2485.732 kb on - strandat 2485.734 kb on + strandat 2485.734 kb on + strandat 2485.734 kb on + strandat 2485.735 kb on - strandat 2485.735 kb on - strandat 2485.735 kb on - strandat 2485.928 kb on + strand, within Pf6N2E2_2090at 2485.928 kb on + strand, within Pf6N2E2_2090at 2485.931 kb on + strand, within Pf6N2E2_2090at 2485.931 kb on + strand, within Pf6N2E2_2090at 2485.931 kb on + strand, within Pf6N2E2_2090at 2485.932 kb on - strand, within Pf6N2E2_2090at 2485.940 kb on + strand, within Pf6N2E2_2090at 2485.940 kb on + strand, within Pf6N2E2_2090at 2485.941 kb on - strand, within Pf6N2E2_2090at 2485.941 kb on - strand, within Pf6N2E2_2090at 2485.941 kb on - strand, within Pf6N2E2_2090at 2486.072 kb on + strand, within Pf6N2E2_2090at 2486.072 kb on + strand, within Pf6N2E2_2090at 2486.073 kb on - strand, within Pf6N2E2_2090at 2486.073 kb on - strand, within Pf6N2E2_2090at 2486.073 kb on - strand, within Pf6N2E2_2090at 2486.073 kb on - strand, within Pf6N2E2_2090at 2486.234 kb on + strand, within Pf6N2E2_2090at 2486.235 kb on - strand, within Pf6N2E2_2090at 2486.235 kb on - strand, within Pf6N2E2_2090at 2486.235 kb on - strand, within Pf6N2E2_2090at 2486.273 kb on + strand, within Pf6N2E2_2090at 2486.273 kb on + strand, within Pf6N2E2_2090at 2486.273 kb on + strand, within Pf6N2E2_2090at 2486.279 kb on + strand, within Pf6N2E2_2090at 2486.279 kb on + strand, within Pf6N2E2_2090at 2486.280 kb on - strand, within Pf6N2E2_2090at 2486.280 kb on - strand, within Pf6N2E2_2090at 2486.280 kb on - strand, within Pf6N2E2_2090at 2486.280 kb on - strand, within Pf6N2E2_2090at 2486.280 kb on - strand, within Pf6N2E2_2090at 2486.280 kb on - strand, within Pf6N2E2_2090at 2486.280 kb on - strand, within Pf6N2E2_2090at 2486.345 kb on + strand, within Pf6N2E2_2090at 2486.345 kb on + strand, within Pf6N2E2_2090at 2486.345 kb on + strand, within Pf6N2E2_2090at 2486.345 kb on + strand, within Pf6N2E2_2090at 2486.346 kb on - strand, within Pf6N2E2_2090at 2486.460 kb on - strand, within Pf6N2E2_2090at 2486.462 kb on + strand, within Pf6N2E2_2090at 2486.463 kb on - strand, within Pf6N2E2_2090at 2486.463 kb on - strand, within Pf6N2E2_2090at 2486.463 kb on - strand, within Pf6N2E2_2090

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,483,837 - -0.1
2,484,065 + Pf6N2E2_2088 0.43 +0.4
2,484,065 + Pf6N2E2_2088 0.43 -0.5
2,484,998 - Pf6N2E2_2089 0.48 +1.4
2,484,998 - Pf6N2E2_2089 0.48 -0.8
2,484,998 - Pf6N2E2_2089 0.48 +2.8
2,484,998 - Pf6N2E2_2089 0.48 +0.9
2,485,066 + Pf6N2E2_2089 0.54 +0.4
2,485,067 - Pf6N2E2_2089 0.55 +0.4
2,485,067 - Pf6N2E2_2089 0.55 +0.3
2,485,067 - Pf6N2E2_2089 0.55 +0.2
2,485,254 + Pf6N2E2_2089 0.72 +0.6
2,485,255 - Pf6N2E2_2089 0.73 +1.2
2,485,255 - Pf6N2E2_2089 0.73 -1.2
2,485,483 - +0.6
2,485,513 + -0.6
2,485,514 - +0.6
2,485,563 + +0.3
2,485,563 + +0.6
2,485,564 - +0.9
2,485,564 - +0.7
2,485,564 - +1.6
2,485,564 - -0.2
2,485,653 + +0.1
2,485,653 + -1.6
2,485,666 - +0.5
2,485,693 + +0.2
2,485,699 + -1.5
2,485,699 + -1.2
2,485,700 - -1.2
2,485,700 - +0.2
2,485,731 + +0.4
2,485,731 + +0.7
2,485,731 + +0.8
2,485,732 - +1.5
2,485,732 - +0.5
2,485,732 - -0.6
2,485,734 + +0.7
2,485,734 + -0.2
2,485,734 + -3.8
2,485,735 - +0.3
2,485,735 - +0.4
2,485,735 - +0.5
2,485,928 + Pf6N2E2_2090 0.19 +0.2
2,485,928 + Pf6N2E2_2090 0.19 +0.6
2,485,931 + Pf6N2E2_2090 0.19 -0.0
2,485,931 + Pf6N2E2_2090 0.19 -1.0
2,485,931 + Pf6N2E2_2090 0.19 -0.2
2,485,932 - Pf6N2E2_2090 0.19 +0.0
2,485,940 + Pf6N2E2_2090 0.20 +0.5
2,485,940 + Pf6N2E2_2090 0.20 +0.6
2,485,941 - Pf6N2E2_2090 0.20 -0.3
2,485,941 - Pf6N2E2_2090 0.20 -0.2
2,485,941 - Pf6N2E2_2090 0.20 -0.4
2,486,072 + Pf6N2E2_2090 0.34 +0.6
2,486,072 + Pf6N2E2_2090 0.34 +0.8
2,486,073 - Pf6N2E2_2090 0.34 -0.9
2,486,073 - Pf6N2E2_2090 0.34 +0.3
2,486,073 - Pf6N2E2_2090 0.34 +0.0
2,486,073 - Pf6N2E2_2090 0.34 +0.2
2,486,234 + Pf6N2E2_2090 0.51 -0.6
2,486,235 - Pf6N2E2_2090 0.52 -0.7
2,486,235 - Pf6N2E2_2090 0.52 +1.2
2,486,235 - Pf6N2E2_2090 0.52 +1.4
2,486,273 + Pf6N2E2_2090 0.56 +0.1
2,486,273 + Pf6N2E2_2090 0.56 +0.6
2,486,273 + Pf6N2E2_2090 0.56 -0.8
2,486,279 + Pf6N2E2_2090 0.56 -0.4
2,486,279 + Pf6N2E2_2090 0.56 -1.4
2,486,280 - Pf6N2E2_2090 0.56 +0.6
2,486,280 - Pf6N2E2_2090 0.56 +0.6
2,486,280 - Pf6N2E2_2090 0.56 -0.2
2,486,280 - Pf6N2E2_2090 0.56 +1.2
2,486,280 - Pf6N2E2_2090 0.56 -0.3
2,486,280 - Pf6N2E2_2090 0.56 +0.9
2,486,280 - Pf6N2E2_2090 0.56 +1.2
2,486,345 + Pf6N2E2_2090 0.63 +1.0
2,486,345 + Pf6N2E2_2090 0.63 +0.5
2,486,345 + Pf6N2E2_2090 0.63 +0.1
2,486,345 + Pf6N2E2_2090 0.63 +2.0
2,486,346 - Pf6N2E2_2090 0.63 +0.0
2,486,460 - Pf6N2E2_2090 0.75 +0.4
2,486,462 + Pf6N2E2_2090 0.76 +0.0
2,486,463 - Pf6N2E2_2090 0.76 -0.6
2,486,463 - Pf6N2E2_2090 0.76 -1.0
2,486,463 - Pf6N2E2_2090 0.76 +0.3

Or see this region's nucleotide sequence