Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1797 and Pf6N2E2_1798 are separated by 295 nucleotides Pf6N2E2_1798 and Pf6N2E2_1799 are separated by 140 nucleotides
Pf6N2E2_1797 - Transcriptional regulator, at 2,126,218 to 2,127,183
_1797
Pf6N2E2_1798 - Argininosuccinate lyase (EC 4.3.2.1), at 2,127,479 to 2,128,906
_1798
Pf6N2E2_1799 - ABC transporter permease protein, at 2,129,047 to 2,129,925
_1799
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2126.619 kb on - strand, within Pf6N2E2_1797 at 2126.627 kb on + strand, within Pf6N2E2_1797 at 2126.902 kb on + strand, within Pf6N2E2_1797 at 2127.191 kb on - strand at 2127.639 kb on + strand, within Pf6N2E2_1798 at 2127.752 kb on - strand, within Pf6N2E2_1798 at 2128.030 kb on - strand, within Pf6N2E2_1798 at 2128.030 kb on - strand, within Pf6N2E2_1798 at 2128.054 kb on - strand, within Pf6N2E2_1798 at 2128.054 kb on - strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.235 kb on - strand, within Pf6N2E2_1798 at 2128.439 kb on + strand, within Pf6N2E2_1798 at 2128.886 kb on + strand at 2128.887 kb on - strand at 2129.144 kb on - strand, within Pf6N2E2_1799 at 2129.230 kb on + strand, within Pf6N2E2_1799 at 2129.390 kb on - strand, within Pf6N2E2_1799 at 2129.390 kb on - strand, within Pf6N2E2_1799 at 2129.390 kb on - strand, within Pf6N2E2_1799 at 2129.560 kb on + strand, within Pf6N2E2_1799 at 2129.561 kb on - strand, within Pf6N2E2_1799 at 2129.589 kb on - strand, within Pf6N2E2_1799 at 2129.774 kb on - strand, within Pf6N2E2_1799 at 2129.774 kb on - strand, within Pf6N2E2_1799 at 2129.791 kb on + strand, within Pf6N2E2_1799 at 2129.792 kb on - strand, within Pf6N2E2_1799
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,126,619 - Pf6N2E2_1797 0.42 +1.5 2,126,627 + Pf6N2E2_1797 0.42 -0.2 2,126,902 + Pf6N2E2_1797 0.71 -1.1 2,127,191 - +0.2 2,127,639 + Pf6N2E2_1798 0.11 +0.5 2,127,752 - Pf6N2E2_1798 0.19 +3.1 2,128,030 - Pf6N2E2_1798 0.39 +1.0 2,128,030 - Pf6N2E2_1798 0.39 +0.3 2,128,054 - Pf6N2E2_1798 0.40 +0.5 2,128,054 - Pf6N2E2_1798 0.40 +1.4 2,128,057 + Pf6N2E2_1798 0.40 -0.2 2,128,057 + Pf6N2E2_1798 0.40 -0.8 2,128,057 + Pf6N2E2_1798 0.40 +1.5 2,128,057 + Pf6N2E2_1798 0.40 +0.6 2,128,057 + Pf6N2E2_1798 0.40 +0.5 2,128,058 - Pf6N2E2_1798 0.41 +0.5 2,128,058 - Pf6N2E2_1798 0.41 -0.9 2,128,058 - Pf6N2E2_1798 0.41 +1.1 2,128,058 - Pf6N2E2_1798 0.41 +0.3 2,128,235 - Pf6N2E2_1798 0.53 +1.2 2,128,439 + Pf6N2E2_1798 0.67 +0.4 2,128,886 + +0.6 2,128,887 - +0.3 2,129,144 - Pf6N2E2_1799 0.11 -0.0 2,129,230 + Pf6N2E2_1799 0.21 -1.2 2,129,390 - Pf6N2E2_1799 0.39 +0.3 2,129,390 - Pf6N2E2_1799 0.39 +0.5 2,129,390 - Pf6N2E2_1799 0.39 +0.2 2,129,560 + Pf6N2E2_1799 0.58 -1.6 2,129,561 - Pf6N2E2_1799 0.58 -0.6 2,129,589 - Pf6N2E2_1799 0.62 -0.9 2,129,774 - Pf6N2E2_1799 0.83 -1.2 2,129,774 - Pf6N2E2_1799 0.83 +1.6 2,129,791 + Pf6N2E2_1799 0.85 +0.5 2,129,792 - Pf6N2E2_1799 0.85 -0.9
Or see this region's nucleotide sequence