Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1736 and Pf6N2E2_1737 are separated by 331 nucleotides Pf6N2E2_1737 and Pf6N2E2_1738 are separated by 190 nucleotides
Pf6N2E2_1736 - blr1018; hypothetical protein, at 2,048,169 to 2,049,419
_1736
Pf6N2E2_1737 - hypothetical protein, at 2,049,751 to 2,050,389
_1737
Pf6N2E2_1738 - Transcriptional regulator, GntR family, at 2,050,580 to 2,051,254
_1738
Position (kb)
2049
2050
2051 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2048.913 kb on + strand, within Pf6N2E2_1736 at 2048.997 kb on + strand, within Pf6N2E2_1736 at 2048.998 kb on - strand, within Pf6N2E2_1736 at 2049.256 kb on - strand, within Pf6N2E2_1736 at 2049.256 kb on - strand, within Pf6N2E2_1736 at 2049.286 kb on + strand, within Pf6N2E2_1736 at 2049.376 kb on - strand at 2049.462 kb on + strand at 2049.463 kb on - strand at 2049.504 kb on - strand at 2049.554 kb on - strand at 2049.554 kb on - strand at 2049.581 kb on - strand at 2049.591 kb on + strand at 2049.592 kb on - strand at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.885 kb on + strand, within Pf6N2E2_1737 at 2049.936 kb on + strand, within Pf6N2E2_1737 at 2050.037 kb on + strand, within Pf6N2E2_1737 at 2050.037 kb on + strand, within Pf6N2E2_1737 at 2050.037 kb on + strand, within Pf6N2E2_1737 at 2050.171 kb on + strand, within Pf6N2E2_1737 at 2050.171 kb on + strand, within Pf6N2E2_1737 at 2050.215 kb on + strand, within Pf6N2E2_1737 at 2050.533 kb on - strand at 2050.744 kb on - strand, within Pf6N2E2_1738 at 2051.258 kb on + strand at 2051.332 kb on - strand at 2051.336 kb on + strand at 2051.337 kb on - strand at 2051.337 kb on - strand at 2051.338 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 2,048,913 + Pf6N2E2_1736 0.59 -1.5 2,048,997 + Pf6N2E2_1736 0.66 -0.5 2,048,998 - Pf6N2E2_1736 0.66 +0.6 2,049,256 - Pf6N2E2_1736 0.87 -0.1 2,049,256 - Pf6N2E2_1736 0.87 +0.4 2,049,286 + Pf6N2E2_1736 0.89 +0.4 2,049,376 - -0.6 2,049,462 + +0.3 2,049,463 - -1.0 2,049,504 - -0.1 2,049,554 - +0.4 2,049,554 - -0.8 2,049,581 - -0.2 2,049,591 + +0.7 2,049,592 - -0.9 2,049,883 + Pf6N2E2_1737 0.21 -2.8 2,049,883 + Pf6N2E2_1737 0.21 +1.0 2,049,883 + Pf6N2E2_1737 0.21 +0.0 2,049,883 + Pf6N2E2_1737 0.21 +1.6 2,049,884 - Pf6N2E2_1737 0.21 +0.6 2,049,884 - Pf6N2E2_1737 0.21 +1.2 2,049,884 - Pf6N2E2_1737 0.21 +0.8 2,049,884 - Pf6N2E2_1737 0.21 +0.1 2,049,885 + Pf6N2E2_1737 0.21 +0.4 2,049,936 + Pf6N2E2_1737 0.29 +1.5 2,050,037 + Pf6N2E2_1737 0.45 +1.0 2,050,037 + Pf6N2E2_1737 0.45 +0.8 2,050,037 + Pf6N2E2_1737 0.45 +0.1 2,050,171 + Pf6N2E2_1737 0.66 +0.4 2,050,171 + Pf6N2E2_1737 0.66 -0.2 2,050,215 + Pf6N2E2_1737 0.73 +0.8 2,050,533 - +0.1 2,050,744 - Pf6N2E2_1738 0.24 -1.1 2,051,258 + -3.3 2,051,332 - -0.3 2,051,336 + +1.4 2,051,337 - +1.1 2,051,337 - -0.0 2,051,338 + -0.0
Or see this region's nucleotide sequence