Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1737

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1736 and Pf6N2E2_1737 are separated by 331 nucleotidesPf6N2E2_1737 and Pf6N2E2_1738 are separated by 190 nucleotides Pf6N2E2_1736 - blr1018; hypothetical protein, at 2,048,169 to 2,049,419 _1736 Pf6N2E2_1737 - hypothetical protein, at 2,049,751 to 2,050,389 _1737 Pf6N2E2_1738 - Transcriptional regulator, GntR family, at 2,050,580 to 2,051,254 _1738 Position (kb) 2049 2050 2051Strain fitness (log2 ratio) -3 -2 -1 0 1at 2048.913 kb on + strand, within Pf6N2E2_1736at 2048.997 kb on + strand, within Pf6N2E2_1736at 2048.998 kb on - strand, within Pf6N2E2_1736at 2049.256 kb on - strand, within Pf6N2E2_1736at 2049.256 kb on - strand, within Pf6N2E2_1736at 2049.286 kb on + strand, within Pf6N2E2_1736at 2049.376 kb on - strandat 2049.462 kb on + strandat 2049.463 kb on - strandat 2049.504 kb on - strandat 2049.554 kb on - strandat 2049.554 kb on - strandat 2049.581 kb on - strandat 2049.591 kb on + strandat 2049.592 kb on - strandat 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.885 kb on + strand, within Pf6N2E2_1737at 2049.936 kb on + strand, within Pf6N2E2_1737at 2050.037 kb on + strand, within Pf6N2E2_1737at 2050.037 kb on + strand, within Pf6N2E2_1737at 2050.037 kb on + strand, within Pf6N2E2_1737at 2050.171 kb on + strand, within Pf6N2E2_1737at 2050.171 kb on + strand, within Pf6N2E2_1737at 2050.215 kb on + strand, within Pf6N2E2_1737at 2050.533 kb on - strandat 2050.744 kb on - strand, within Pf6N2E2_1738at 2051.258 kb on + strandat 2051.332 kb on - strandat 2051.336 kb on + strandat 2051.337 kb on - strandat 2051.337 kb on - strandat 2051.338 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
2,048,913 + Pf6N2E2_1736 0.59 -1.5
2,048,997 + Pf6N2E2_1736 0.66 -0.5
2,048,998 - Pf6N2E2_1736 0.66 +0.6
2,049,256 - Pf6N2E2_1736 0.87 -0.1
2,049,256 - Pf6N2E2_1736 0.87 +0.4
2,049,286 + Pf6N2E2_1736 0.89 +0.4
2,049,376 - -0.6
2,049,462 + +0.3
2,049,463 - -1.0
2,049,504 - -0.1
2,049,554 - +0.4
2,049,554 - -0.8
2,049,581 - -0.2
2,049,591 + +0.7
2,049,592 - -0.9
2,049,883 + Pf6N2E2_1737 0.21 -2.8
2,049,883 + Pf6N2E2_1737 0.21 +1.0
2,049,883 + Pf6N2E2_1737 0.21 +0.0
2,049,883 + Pf6N2E2_1737 0.21 +1.6
2,049,884 - Pf6N2E2_1737 0.21 +0.6
2,049,884 - Pf6N2E2_1737 0.21 +1.2
2,049,884 - Pf6N2E2_1737 0.21 +0.8
2,049,884 - Pf6N2E2_1737 0.21 +0.1
2,049,885 + Pf6N2E2_1737 0.21 +0.4
2,049,936 + Pf6N2E2_1737 0.29 +1.5
2,050,037 + Pf6N2E2_1737 0.45 +1.0
2,050,037 + Pf6N2E2_1737 0.45 +0.8
2,050,037 + Pf6N2E2_1737 0.45 +0.1
2,050,171 + Pf6N2E2_1737 0.66 +0.4
2,050,171 + Pf6N2E2_1737 0.66 -0.2
2,050,215 + Pf6N2E2_1737 0.73 +0.8
2,050,533 - +0.1
2,050,744 - Pf6N2E2_1738 0.24 -1.1
2,051,258 + -3.3
2,051,332 - -0.3
2,051,336 + +1.4
2,051,337 - +1.1
2,051,337 - -0.0
2,051,338 + -0.0

Or see this region's nucleotide sequence