Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_466

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_464 and Pf6N2E2_465 are separated by 68 nucleotidesPf6N2E2_465 and Pf6N2E2_466 are separated by 41 nucleotidesPf6N2E2_466 and Pf6N2E2_467 are separated by 296 nucleotides Pf6N2E2_464 - Sensory histidine kinase QseC, at 529,360 to 530,661 _464 Pf6N2E2_465 - Probable transmembrane protein, at 530,730 to 531,371 _465 Pf6N2E2_466 - Nicotinamidase (EC 3.5.1.19), at 531,413 to 532,066 _466 Pf6N2E2_467 - Sensory box/GGDEF family protein, at 532,363 to 534,441 _467 Position (kb) 531 532 533Strain fitness (log2 ratio) -2 -1 0 1 2at 530.732 kb on - strandat 530.754 kb on - strandat 530.890 kb on + strand, within Pf6N2E2_465at 530.905 kb on + strand, within Pf6N2E2_465at 530.905 kb on + strand, within Pf6N2E2_465at 530.905 kb on + strand, within Pf6N2E2_465at 530.906 kb on - strand, within Pf6N2E2_465at 530.906 kb on - strand, within Pf6N2E2_465at 530.965 kb on + strand, within Pf6N2E2_465at 530.965 kb on + strand, within Pf6N2E2_465at 530.965 kb on + strand, within Pf6N2E2_465at 530.965 kb on + strand, within Pf6N2E2_465at 530.966 kb on - strand, within Pf6N2E2_465at 530.968 kb on + strand, within Pf6N2E2_465at 530.968 kb on + strand, within Pf6N2E2_465at 530.969 kb on - strand, within Pf6N2E2_465at 530.969 kb on - strand, within Pf6N2E2_465at 531.239 kb on - strand, within Pf6N2E2_465at 531.239 kb on - strand, within Pf6N2E2_465at 531.239 kb on - strand, within Pf6N2E2_465at 531.401 kb on + strandat 531.401 kb on + strandat 531.401 kb on + strandat 531.401 kb on + strandat 531.401 kb on + strandat 531.404 kb on + strandat 531.404 kb on + strandat 531.405 kb on - strandat 531.405 kb on - strandat 531.434 kb on + strandat 531.435 kb on - strandat 531.435 kb on - strandat 531.615 kb on + strand, within Pf6N2E2_466at 531.615 kb on + strand, within Pf6N2E2_466at 531.616 kb on - strand, within Pf6N2E2_466at 531.696 kb on + strand, within Pf6N2E2_466at 531.697 kb on - strand, within Pf6N2E2_466at 531.697 kb on - strand, within Pf6N2E2_466at 531.792 kb on - strand, within Pf6N2E2_466at 531.792 kb on - strand, within Pf6N2E2_466at 531.792 kb on - strand, within Pf6N2E2_466at 532.014 kb on - strandat 532.014 kb on - strandat 532.100 kb on + strandat 532.101 kb on - strandat 532.101 kb on - strandat 532.126 kb on + strandat 532.127 kb on - strandat 532.127 kb on - strandat 532.200 kb on - strandat 532.244 kb on + strandat 532.244 kb on + strandat 532.297 kb on + strandat 532.297 kb on + strandat 532.297 kb on + strandat 532.297 kb on + strandat 532.297 kb on + strandat 532.298 kb on - strandat 532.302 kb on - strandat 532.302 kb on - strandat 532.349 kb on + strandat 532.349 kb on + strandat 532.378 kb on + strandat 532.378 kb on + strandat 532.379 kb on - strandat 532.429 kb on + strandat 532.429 kb on + strandat 532.429 kb on + strandat 532.429 kb on + strandat 532.430 kb on - strandat 532.430 kb on - strandat 532.430 kb on - strandat 532.589 kb on + strand, within Pf6N2E2_467at 532.589 kb on + strand, within Pf6N2E2_467at 532.590 kb on - strand, within Pf6N2E2_467at 532.590 kb on - strand, within Pf6N2E2_467at 532.590 kb on - strand, within Pf6N2E2_467at 532.590 kb on - strand, within Pf6N2E2_467at 532.729 kb on + strand, within Pf6N2E2_467at 532.729 kb on + strand, within Pf6N2E2_467at 532.730 kb on - strand, within Pf6N2E2_467at 532.730 kb on - strand, within Pf6N2E2_467at 532.772 kb on - strand, within Pf6N2E2_467at 532.930 kb on + strand, within Pf6N2E2_467at 532.930 kb on + strand, within Pf6N2E2_467at 532.930 kb on + strand, within Pf6N2E2_467at 532.931 kb on - strand, within Pf6N2E2_467at 532.931 kb on - strand, within Pf6N2E2_467

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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530,732 - +1.4
530,754 - +0.8
530,890 + Pf6N2E2_465 0.25 +0.3
530,905 + Pf6N2E2_465 0.27 -0.8
530,905 + Pf6N2E2_465 0.27 +0.6
530,905 + Pf6N2E2_465 0.27 -0.3
530,906 - Pf6N2E2_465 0.27 -0.7
530,906 - Pf6N2E2_465 0.27 +0.6
530,965 + Pf6N2E2_465 0.37 +0.9
530,965 + Pf6N2E2_465 0.37 -0.1
530,965 + Pf6N2E2_465 0.37 -0.4
530,965 + Pf6N2E2_465 0.37 +0.2
530,966 - Pf6N2E2_465 0.37 +0.7
530,968 + Pf6N2E2_465 0.37 +1.4
530,968 + Pf6N2E2_465 0.37 -1.4
530,969 - Pf6N2E2_465 0.37 +0.9
530,969 - Pf6N2E2_465 0.37 +0.6
531,239 - Pf6N2E2_465 0.79 -1.5
531,239 - Pf6N2E2_465 0.79 +1.2
531,239 - Pf6N2E2_465 0.79 +0.4
531,401 + -1.2
531,401 + +0.6
531,401 + +1.6
531,401 + +1.2
531,401 + -0.2
531,404 + -0.1
531,404 + -2.3
531,405 - +0.5
531,405 - +0.2
531,434 + +0.1
531,435 - -0.9
531,435 - -0.5
531,615 + Pf6N2E2_466 0.31 +1.4
531,615 + Pf6N2E2_466 0.31 +0.0
531,616 - Pf6N2E2_466 0.31 -0.8
531,696 + Pf6N2E2_466 0.43 -0.1
531,697 - Pf6N2E2_466 0.43 -0.2
531,697 - Pf6N2E2_466 0.43 -0.5
531,792 - Pf6N2E2_466 0.58 +0.5
531,792 - Pf6N2E2_466 0.58 -1.1
531,792 - Pf6N2E2_466 0.58 -0.2
532,014 - -0.1
532,014 - -0.8
532,100 + +0.9
532,101 - +2.2
532,101 - +1.2
532,126 + +0.5
532,127 - +0.9
532,127 - +1.2
532,200 - -1.9
532,244 + -0.4
532,244 + -0.2
532,297 + +0.5
532,297 + +1.2
532,297 + +0.3
532,297 + -0.4
532,297 + +0.2
532,298 - +0.8
532,302 - -0.2
532,302 - +0.2
532,349 + -0.0
532,349 + +0.6
532,378 + +0.2
532,378 + +1.2
532,379 - +1.2
532,429 + +0.1
532,429 + +0.3
532,429 + -0.1
532,429 + -1.2
532,430 - -0.3
532,430 - +0.7
532,430 - -1.5
532,589 + Pf6N2E2_467 0.11 +0.4
532,589 + Pf6N2E2_467 0.11 +0.8
532,590 - Pf6N2E2_467 0.11 +0.0
532,590 - Pf6N2E2_467 0.11 +1.0
532,590 - Pf6N2E2_467 0.11 -0.2
532,590 - Pf6N2E2_467 0.11 +0.1
532,729 + Pf6N2E2_467 0.18 +0.5
532,729 + Pf6N2E2_467 0.18 -0.2
532,730 - Pf6N2E2_467 0.18 +0.7
532,730 - Pf6N2E2_467 0.18 +1.6
532,772 - Pf6N2E2_467 0.20 +1.3
532,930 + Pf6N2E2_467 0.27 -0.1
532,930 + Pf6N2E2_467 0.27 -0.3
532,930 + Pf6N2E2_467 0.27 +0.7
532,931 - Pf6N2E2_467 0.27 -1.3
532,931 - Pf6N2E2_467 0.27 -0.9

Or see this region's nucleotide sequence