Experiment: Gly-Glu (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_464 and Pf6N2E2_465 are separated by 68 nucleotides Pf6N2E2_465 and Pf6N2E2_466 are separated by 41 nucleotides Pf6N2E2_466 and Pf6N2E2_467 are separated by 296 nucleotides
Pf6N2E2_464 - Sensory histidine kinase QseC, at 529,360 to 530,661
_464
Pf6N2E2_465 - Probable transmembrane protein, at 530,730 to 531,371
_465
Pf6N2E2_466 - Nicotinamidase (EC 3.5.1.19), at 531,413 to 532,066
_466
Pf6N2E2_467 - Sensory box/GGDEF family protein, at 532,363 to 534,441
_467
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.732 kb on - strand at 530.754 kb on - strand at 530.890 kb on + strand, within Pf6N2E2_465 at 530.905 kb on + strand, within Pf6N2E2_465 at 530.905 kb on + strand, within Pf6N2E2_465 at 530.905 kb on + strand, within Pf6N2E2_465 at 530.906 kb on - strand, within Pf6N2E2_465 at 530.906 kb on - strand, within Pf6N2E2_465 at 530.965 kb on + strand, within Pf6N2E2_465 at 530.965 kb on + strand, within Pf6N2E2_465 at 530.965 kb on + strand, within Pf6N2E2_465 at 530.965 kb on + strand, within Pf6N2E2_465 at 530.966 kb on - strand, within Pf6N2E2_465 at 530.968 kb on + strand, within Pf6N2E2_465 at 530.968 kb on + strand, within Pf6N2E2_465 at 530.969 kb on - strand, within Pf6N2E2_465 at 530.969 kb on - strand, within Pf6N2E2_465 at 531.239 kb on - strand, within Pf6N2E2_465 at 531.239 kb on - strand, within Pf6N2E2_465 at 531.239 kb on - strand, within Pf6N2E2_465 at 531.401 kb on + strand at 531.401 kb on + strand at 531.401 kb on + strand at 531.401 kb on + strand at 531.401 kb on + strand at 531.404 kb on + strand at 531.404 kb on + strand at 531.405 kb on - strand at 531.405 kb on - strand at 531.434 kb on + strand at 531.435 kb on - strand at 531.435 kb on - strand at 531.615 kb on + strand, within Pf6N2E2_466 at 531.615 kb on + strand, within Pf6N2E2_466 at 531.616 kb on - strand, within Pf6N2E2_466 at 531.696 kb on + strand, within Pf6N2E2_466 at 531.697 kb on - strand, within Pf6N2E2_466 at 531.697 kb on - strand, within Pf6N2E2_466 at 531.792 kb on - strand, within Pf6N2E2_466 at 531.792 kb on - strand, within Pf6N2E2_466 at 531.792 kb on - strand, within Pf6N2E2_466 at 532.014 kb on - strand at 532.014 kb on - strand at 532.100 kb on + strand at 532.101 kb on - strand at 532.101 kb on - strand at 532.126 kb on + strand at 532.127 kb on - strand at 532.127 kb on - strand at 532.200 kb on - strand at 532.244 kb on + strand at 532.244 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.297 kb on + strand at 532.298 kb on - strand at 532.302 kb on - strand at 532.302 kb on - strand at 532.349 kb on + strand at 532.349 kb on + strand at 532.378 kb on + strand at 532.378 kb on + strand at 532.379 kb on - strand at 532.429 kb on + strand at 532.429 kb on + strand at 532.429 kb on + strand at 532.429 kb on + strand at 532.430 kb on - strand at 532.430 kb on - strand at 532.430 kb on - strand at 532.589 kb on + strand, within Pf6N2E2_467 at 532.589 kb on + strand, within Pf6N2E2_467 at 532.590 kb on - strand, within Pf6N2E2_467 at 532.590 kb on - strand, within Pf6N2E2_467 at 532.590 kb on - strand, within Pf6N2E2_467 at 532.590 kb on - strand, within Pf6N2E2_467 at 532.729 kb on + strand, within Pf6N2E2_467 at 532.729 kb on + strand, within Pf6N2E2_467 at 532.730 kb on - strand, within Pf6N2E2_467 at 532.730 kb on - strand, within Pf6N2E2_467 at 532.772 kb on - strand, within Pf6N2E2_467 at 532.930 kb on + strand, within Pf6N2E2_467 at 532.930 kb on + strand, within Pf6N2E2_467 at 532.930 kb on + strand, within Pf6N2E2_467 at 532.931 kb on - strand, within Pf6N2E2_467 at 532.931 kb on - strand, within Pf6N2E2_467
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (N) remove 530,732 - +1.4 530,754 - +0.8 530,890 + Pf6N2E2_465 0.25 +0.3 530,905 + Pf6N2E2_465 0.27 -0.8 530,905 + Pf6N2E2_465 0.27 +0.6 530,905 + Pf6N2E2_465 0.27 -0.3 530,906 - Pf6N2E2_465 0.27 -0.7 530,906 - Pf6N2E2_465 0.27 +0.6 530,965 + Pf6N2E2_465 0.37 +0.9 530,965 + Pf6N2E2_465 0.37 -0.1 530,965 + Pf6N2E2_465 0.37 -0.4 530,965 + Pf6N2E2_465 0.37 +0.2 530,966 - Pf6N2E2_465 0.37 +0.7 530,968 + Pf6N2E2_465 0.37 +1.4 530,968 + Pf6N2E2_465 0.37 -1.4 530,969 - Pf6N2E2_465 0.37 +0.9 530,969 - Pf6N2E2_465 0.37 +0.6 531,239 - Pf6N2E2_465 0.79 -1.5 531,239 - Pf6N2E2_465 0.79 +1.2 531,239 - Pf6N2E2_465 0.79 +0.4 531,401 + -1.2 531,401 + +0.6 531,401 + +1.6 531,401 + +1.2 531,401 + -0.2 531,404 + -0.1 531,404 + -2.3 531,405 - +0.5 531,405 - +0.2 531,434 + +0.1 531,435 - -0.9 531,435 - -0.5 531,615 + Pf6N2E2_466 0.31 +1.4 531,615 + Pf6N2E2_466 0.31 +0.0 531,616 - Pf6N2E2_466 0.31 -0.8 531,696 + Pf6N2E2_466 0.43 -0.1 531,697 - Pf6N2E2_466 0.43 -0.2 531,697 - Pf6N2E2_466 0.43 -0.5 531,792 - Pf6N2E2_466 0.58 +0.5 531,792 - Pf6N2E2_466 0.58 -1.1 531,792 - Pf6N2E2_466 0.58 -0.2 532,014 - -0.1 532,014 - -0.8 532,100 + +0.9 532,101 - +2.2 532,101 - +1.2 532,126 + +0.5 532,127 - +0.9 532,127 - +1.2 532,200 - -1.9 532,244 + -0.4 532,244 + -0.2 532,297 + +0.5 532,297 + +1.2 532,297 + +0.3 532,297 + -0.4 532,297 + +0.2 532,298 - +0.8 532,302 - -0.2 532,302 - +0.2 532,349 + -0.0 532,349 + +0.6 532,378 + +0.2 532,378 + +1.2 532,379 - +1.2 532,429 + +0.1 532,429 + +0.3 532,429 + -0.1 532,429 + -1.2 532,430 - -0.3 532,430 - +0.7 532,430 - -1.5 532,589 + Pf6N2E2_467 0.11 +0.4 532,589 + Pf6N2E2_467 0.11 +0.8 532,590 - Pf6N2E2_467 0.11 +0.0 532,590 - Pf6N2E2_467 0.11 +1.0 532,590 - Pf6N2E2_467 0.11 -0.2 532,590 - Pf6N2E2_467 0.11 +0.1 532,729 + Pf6N2E2_467 0.18 +0.5 532,729 + Pf6N2E2_467 0.18 -0.2 532,730 - Pf6N2E2_467 0.18 +0.7 532,730 - Pf6N2E2_467 0.18 +1.6 532,772 - Pf6N2E2_467 0.20 +1.3 532,930 + Pf6N2E2_467 0.27 -0.1 532,930 + Pf6N2E2_467 0.27 -0.3 532,930 + Pf6N2E2_467 0.27 +0.7 532,931 - Pf6N2E2_467 0.27 -1.3 532,931 - Pf6N2E2_467 0.27 -0.9
Or see this region's nucleotide sequence