Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4226

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4224 and Pf6N2E2_4225 are separated by 181 nucleotidesPf6N2E2_4225 and Pf6N2E2_4226 are separated by 9 nucleotidesPf6N2E2_4226 and Pf6N2E2_4227 are separated by 1 nucleotidesPf6N2E2_4227 and Pf6N2E2_4228 are separated by 7 nucleotides Pf6N2E2_4224 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 4,913,719 to 4,914,276 _4224 Pf6N2E2_4225 - Nicotinamidase (EC 3.5.1.19), at 4,914,458 to 4,915,105 _4225 Pf6N2E2_4226 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 4,915,115 to 4,916,344 _4226 Pf6N2E2_4227 - NAD synthetase (EC 6.3.1.5), at 4,916,346 to 4,917,182 _4227 Pf6N2E2_4228 - Chemotactic transducer, at 4,917,190 to 4,919,079 _4228 Position (kb) 4915 4916 4917Strain fitness (log2 ratio) -2 -1 0 1 2at 4914.131 kb on + strand, within Pf6N2E2_4224at 4914.132 kb on - strand, within Pf6N2E2_4224at 4914.132 kb on - strand, within Pf6N2E2_4224at 4914.306 kb on - strandat 4914.422 kb on - strandat 4914.422 kb on - strandat 4914.514 kb on + strandat 4914.514 kb on + strandat 4914.515 kb on - strandat 4914.768 kb on - strand, within Pf6N2E2_4225at 4914.773 kb on + strand, within Pf6N2E2_4225at 4914.774 kb on - strand, within Pf6N2E2_4225at 4914.774 kb on - strand, within Pf6N2E2_4225at 4914.779 kb on + strand, within Pf6N2E2_4225at 4914.779 kb on + strand, within Pf6N2E2_4225at 4914.779 kb on + strand, within Pf6N2E2_4225at 4914.779 kb on + strand, within Pf6N2E2_4225at 4914.780 kb on - strand, within Pf6N2E2_4225at 4914.780 kb on - strand, within Pf6N2E2_4225at 4914.873 kb on - strand, within Pf6N2E2_4225at 4915.103 kb on + strandat 4915.103 kb on + strandat 4915.103 kb on + strandat 4915.104 kb on - strandat 4915.172 kb on + strandat 4915.172 kb on + strandat 4915.172 kb on + strandat 4915.172 kb on + strandat 4915.172 kb on + strandat 4915.172 kb on + strandat 4915.173 kb on - strandat 4915.173 kb on - strandat 4915.173 kb on - strandat 4915.175 kb on + strandat 4915.175 kb on + strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.176 kb on - strandat 4915.367 kb on + strand, within Pf6N2E2_4226at 4915.367 kb on + strand, within Pf6N2E2_4226at 4915.421 kb on + strand, within Pf6N2E2_4226at 4915.422 kb on - strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.425 kb on + strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.426 kb on - strand, within Pf6N2E2_4226at 4915.544 kb on + strand, within Pf6N2E2_4226at 4915.583 kb on + strand, within Pf6N2E2_4226at 4915.583 kb on + strand, within Pf6N2E2_4226at 4915.584 kb on - strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.702 kb on + strand, within Pf6N2E2_4226at 4915.703 kb on - strand, within Pf6N2E2_4226at 4915.703 kb on - strand, within Pf6N2E2_4226at 4915.703 kb on - strand, within Pf6N2E2_4226at 4915.703 kb on - strand, within Pf6N2E2_4226at 4915.703 kb on - strand, within Pf6N2E2_4226at 4915.703 kb on - strand, within Pf6N2E2_4226at 4915.703 kb on - strand, within Pf6N2E2_4226at 4915.705 kb on + strand, within Pf6N2E2_4226at 4915.745 kb on - strand, within Pf6N2E2_4226at 4915.760 kb on + strand, within Pf6N2E2_4226at 4915.761 kb on - strand, within Pf6N2E2_4226at 4915.761 kb on - strand, within Pf6N2E2_4226at 4915.878 kb on - strand, within Pf6N2E2_4226at 4915.949 kb on + strand, within Pf6N2E2_4226at 4915.949 kb on + strand, within Pf6N2E2_4226at 4915.950 kb on - strand, within Pf6N2E2_4226at 4915.964 kb on + strand, within Pf6N2E2_4226at 4915.964 kb on + strand, within Pf6N2E2_4226at 4915.964 kb on + strand, within Pf6N2E2_4226at 4915.964 kb on + strand, within Pf6N2E2_4226at 4915.964 kb on + strand, within Pf6N2E2_4226at 4915.964 kb on + strand, within Pf6N2E2_4226at 4915.964 kb on + strand, within Pf6N2E2_4226at 4915.965 kb on - strand, within Pf6N2E2_4226at 4915.965 kb on - strand, within Pf6N2E2_4226at 4915.965 kb on - strand, within Pf6N2E2_4226at 4916.346 kb on - strandat 4916.351 kb on + strandat 4916.352 kb on - strandat 4916.352 kb on - strandat 4916.352 kb on - strandat 4916.533 kb on + strand, within Pf6N2E2_4227at 4916.534 kb on - strand, within Pf6N2E2_4227at 4916.534 kb on - strand, within Pf6N2E2_4227at 4916.571 kb on + strand, within Pf6N2E2_4227at 4916.571 kb on + strand, within Pf6N2E2_4227at 4916.571 kb on + strand, within Pf6N2E2_4227at 4916.571 kb on + strand, within Pf6N2E2_4227at 4916.571 kb on + strand, within Pf6N2E2_4227at 4916.571 kb on + strand, within Pf6N2E2_4227at 4916.572 kb on - strand, within Pf6N2E2_4227at 4916.585 kb on + strand, within Pf6N2E2_4227at 4916.586 kb on - strand, within Pf6N2E2_4227at 4916.604 kb on + strand, within Pf6N2E2_4227at 4916.604 kb on + strand, within Pf6N2E2_4227at 4916.604 kb on + strand, within Pf6N2E2_4227at 4916.802 kb on + strand, within Pf6N2E2_4227at 4916.802 kb on + strand, within Pf6N2E2_4227at 4916.803 kb on - strand, within Pf6N2E2_4227at 4916.803 kb on - strand, within Pf6N2E2_4227at 4917.043 kb on - strand, within Pf6N2E2_4227at 4917.054 kb on + strand, within Pf6N2E2_4227at 4917.073 kb on - strand, within Pf6N2E2_4227at 4917.127 kb on - strandat 4917.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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4,914,131 + Pf6N2E2_4224 0.74 +0.1
4,914,132 - Pf6N2E2_4224 0.74 +0.6
4,914,132 - Pf6N2E2_4224 0.74 -1.4
4,914,306 - -0.7
4,914,422 - -0.6
4,914,422 - -1.7
4,914,514 + -0.5
4,914,514 + -1.5
4,914,515 - +0.5
4,914,768 - Pf6N2E2_4225 0.48 -0.2
4,914,773 + Pf6N2E2_4225 0.49 -0.2
4,914,774 - Pf6N2E2_4225 0.49 +0.4
4,914,774 - Pf6N2E2_4225 0.49 +0.8
4,914,779 + Pf6N2E2_4225 0.50 -1.2
4,914,779 + Pf6N2E2_4225 0.50 -1.2
4,914,779 + Pf6N2E2_4225 0.50 -1.5
4,914,779 + Pf6N2E2_4225 0.50 -0.0
4,914,780 - Pf6N2E2_4225 0.50 +1.0
4,914,780 - Pf6N2E2_4225 0.50 +1.0
4,914,873 - Pf6N2E2_4225 0.64 +0.8
4,915,103 + -1.0
4,915,103 + -1.1
4,915,103 + -1.2
4,915,104 - +0.0
4,915,172 + +0.4
4,915,172 + +0.8
4,915,172 + -0.7
4,915,172 + -0.0
4,915,172 + -0.4
4,915,172 + -1.6
4,915,173 - +0.1
4,915,173 - -1.0
4,915,173 - +1.0
4,915,175 + +0.7
4,915,175 + +0.6
4,915,176 - +0.3
4,915,176 - +0.3
4,915,176 - +0.4
4,915,176 - -0.8
4,915,176 - -0.6
4,915,176 - -0.2
4,915,176 - -0.8
4,915,176 - +0.7
4,915,176 - +0.1
4,915,367 + Pf6N2E2_4226 0.20 +0.4
4,915,367 + Pf6N2E2_4226 0.20 +0.8
4,915,421 + Pf6N2E2_4226 0.25 -0.9
4,915,422 - Pf6N2E2_4226 0.25 +0.1
4,915,425 + Pf6N2E2_4226 0.25 +0.2
4,915,425 + Pf6N2E2_4226 0.25 -1.5
4,915,425 + Pf6N2E2_4226 0.25 -1.7
4,915,425 + Pf6N2E2_4226 0.25 +0.1
4,915,425 + Pf6N2E2_4226 0.25 +0.0
4,915,425 + Pf6N2E2_4226 0.25 -1.3
4,915,425 + Pf6N2E2_4226 0.25 -2.0
4,915,425 + Pf6N2E2_4226 0.25 +0.2
4,915,425 + Pf6N2E2_4226 0.25 +0.2
4,915,425 + Pf6N2E2_4226 0.25 -1.4
4,915,425 + Pf6N2E2_4226 0.25 -0.2
4,915,425 + Pf6N2E2_4226 0.25 -0.6
4,915,426 - Pf6N2E2_4226 0.25 +0.9
4,915,426 - Pf6N2E2_4226 0.25 -0.8
4,915,426 - Pf6N2E2_4226 0.25 +0.4
4,915,426 - Pf6N2E2_4226 0.25 +0.3
4,915,426 - Pf6N2E2_4226 0.25 -0.4
4,915,426 - Pf6N2E2_4226 0.25 +0.1
4,915,426 - Pf6N2E2_4226 0.25 +1.0
4,915,426 - Pf6N2E2_4226 0.25 -0.1
4,915,426 - Pf6N2E2_4226 0.25 +0.9
4,915,426 - Pf6N2E2_4226 0.25 -1.6
4,915,426 - Pf6N2E2_4226 0.25 -0.2
4,915,426 - Pf6N2E2_4226 0.25 +1.7
4,915,426 - Pf6N2E2_4226 0.25 -0.0
4,915,544 + Pf6N2E2_4226 0.35 +1.6
4,915,583 + Pf6N2E2_4226 0.38 -0.2
4,915,583 + Pf6N2E2_4226 0.38 -0.2
4,915,584 - Pf6N2E2_4226 0.38 -0.4
4,915,702 + Pf6N2E2_4226 0.48 -0.1
4,915,702 + Pf6N2E2_4226 0.48 -1.0
4,915,702 + Pf6N2E2_4226 0.48 -0.6
4,915,702 + Pf6N2E2_4226 0.48 +1.1
4,915,702 + Pf6N2E2_4226 0.48 -0.5
4,915,702 + Pf6N2E2_4226 0.48 +0.4
4,915,702 + Pf6N2E2_4226 0.48 +0.6
4,915,702 + Pf6N2E2_4226 0.48 +0.5
4,915,703 - Pf6N2E2_4226 0.48 -0.4
4,915,703 - Pf6N2E2_4226 0.48 +0.2
4,915,703 - Pf6N2E2_4226 0.48 +0.4
4,915,703 - Pf6N2E2_4226 0.48 +0.0
4,915,703 - Pf6N2E2_4226 0.48 +0.0
4,915,703 - Pf6N2E2_4226 0.48 +0.2
4,915,703 - Pf6N2E2_4226 0.48 -0.1
4,915,705 + Pf6N2E2_4226 0.48 +2.1
4,915,745 - Pf6N2E2_4226 0.51 -1.0
4,915,760 + Pf6N2E2_4226 0.52 +1.5
4,915,761 - Pf6N2E2_4226 0.53 -1.8
4,915,761 - Pf6N2E2_4226 0.53 -1.6
4,915,878 - Pf6N2E2_4226 0.62 +0.1
4,915,949 + Pf6N2E2_4226 0.68 -0.8
4,915,949 + Pf6N2E2_4226 0.68 -0.4
4,915,950 - Pf6N2E2_4226 0.68 -0.1
4,915,964 + Pf6N2E2_4226 0.69 -0.5
4,915,964 + Pf6N2E2_4226 0.69 -0.2
4,915,964 + Pf6N2E2_4226 0.69 +0.4
4,915,964 + Pf6N2E2_4226 0.69 +0.3
4,915,964 + Pf6N2E2_4226 0.69 +1.2
4,915,964 + Pf6N2E2_4226 0.69 +0.0
4,915,964 + Pf6N2E2_4226 0.69 -0.4
4,915,965 - Pf6N2E2_4226 0.69 +1.1
4,915,965 - Pf6N2E2_4226 0.69 -0.3
4,915,965 - Pf6N2E2_4226 0.69 +0.3
4,916,346 - +1.2
4,916,351 + -0.2
4,916,352 - +0.0
4,916,352 - +0.6
4,916,352 - +1.0
4,916,533 + Pf6N2E2_4227 0.22 -0.2
4,916,534 - Pf6N2E2_4227 0.22 -0.3
4,916,534 - Pf6N2E2_4227 0.22 -0.5
4,916,571 + Pf6N2E2_4227 0.27 -0.2
4,916,571 + Pf6N2E2_4227 0.27 -0.1
4,916,571 + Pf6N2E2_4227 0.27 +0.1
4,916,571 + Pf6N2E2_4227 0.27 -0.2
4,916,571 + Pf6N2E2_4227 0.27 +0.8
4,916,571 + Pf6N2E2_4227 0.27 -0.8
4,916,572 - Pf6N2E2_4227 0.27 +0.9
4,916,585 + Pf6N2E2_4227 0.29 +0.8
4,916,586 - Pf6N2E2_4227 0.29 +0.3
4,916,604 + Pf6N2E2_4227 0.31 -0.4
4,916,604 + Pf6N2E2_4227 0.31 +0.4
4,916,604 + Pf6N2E2_4227 0.31 +0.7
4,916,802 + Pf6N2E2_4227 0.54 -1.4
4,916,802 + Pf6N2E2_4227 0.54 +0.1
4,916,803 - Pf6N2E2_4227 0.55 +0.4
4,916,803 - Pf6N2E2_4227 0.55 +0.5
4,917,043 - Pf6N2E2_4227 0.83 -0.0
4,917,054 + Pf6N2E2_4227 0.85 -0.0
4,917,073 - Pf6N2E2_4227 0.87 +0.6
4,917,127 - -0.1
4,917,127 - +0.2

Or see this region's nucleotide sequence