Experiment: Gly-Glu (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_10 and Pf6N2E2_11 are separated by 353 nucleotides Pf6N2E2_11 and Pf6N2E2_12 are separated by 144 nucleotides Pf6N2E2_12 and Pf6N2E2_13 are separated by 24 nucleotides
Pf6N2E2_10 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 38,724 to 40,382
_10
Pf6N2E2_11 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 40,736 to 40,888
_11
Pf6N2E2_12 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 41,033 to 41,908
_12
Pf6N2E2_13 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 41,933 to 43,213
_13
Position (kb) 41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.106 kb on + strand, within Pf6N2E2_10 at 40.311 kb on + strand at 40.311 kb on + strand at 40.312 kb on - strand at 40.481 kb on + strand at 40.481 kb on + strand at 40.532 kb on + strand at 40.532 kb on + strand at 40.533 kb on - strand at 40.575 kb on - strand at 40.575 kb on - strand at 40.575 kb on - strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.737 kb on + strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.738 kb on - strand at 40.742 kb on - strand at 40.742 kb on - strand at 40.911 kb on + strand at 40.912 kb on - strand at 40.912 kb on - strand at 40.912 kb on - strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.034 kb on + strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.035 kb on - strand at 41.038 kb on + strand at 41.208 kb on + strand, within Pf6N2E2_12 at 41.209 kb on - strand, within Pf6N2E2_12 at 41.209 kb on - strand, within Pf6N2E2_12 at 41.221 kb on - strand, within Pf6N2E2_12 at 41.221 kb on - strand, within Pf6N2E2_12 at 41.241 kb on + strand, within Pf6N2E2_12 at 41.262 kb on + strand, within Pf6N2E2_12 at 41.331 kb on + strand, within Pf6N2E2_12 at 41.359 kb on - strand, within Pf6N2E2_12 at 41.484 kb on + strand, within Pf6N2E2_12 at 41.484 kb on + strand, within Pf6N2E2_12 at 41.484 kb on + strand, within Pf6N2E2_12 at 41.485 kb on - strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.535 kb on + strand, within Pf6N2E2_12 at 41.536 kb on - strand, within Pf6N2E2_12 at 41.536 kb on - strand, within Pf6N2E2_12 at 41.536 kb on - strand, within Pf6N2E2_12 at 41.623 kb on - strand, within Pf6N2E2_12 at 42.189 kb on + strand, within Pf6N2E2_13 at 42.360 kb on + strand, within Pf6N2E2_13 at 42.361 kb on - strand, within Pf6N2E2_13 at 42.361 kb on - strand, within Pf6N2E2_13 at 42.507 kb on + strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.823 kb on - strand, within Pf6N2E2_13 at 42.823 kb on - strand, within Pf6N2E2_13
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (N) remove 40,106 + Pf6N2E2_10 0.83 -0.4 40,106 + Pf6N2E2_10 0.83 -1.0 40,106 + Pf6N2E2_10 0.83 +1.5 40,106 + Pf6N2E2_10 0.83 -0.9 40,106 + Pf6N2E2_10 0.83 -0.4 40,311 + -0.1 40,311 + +0.4 40,312 - +0.6 40,481 + -0.4 40,481 + +0.0 40,532 + -0.8 40,532 + +0.0 40,533 - +0.7 40,575 - +0.6 40,575 - -0.0 40,575 - -0.1 40,737 + +1.4 40,737 + -2.0 40,737 + +0.4 40,737 + -1.4 40,737 + -0.4 40,737 + -0.9 40,738 - +1.3 40,738 - +0.9 40,738 - +0.3 40,738 - +0.4 40,738 - -0.1 40,738 - +1.1 40,738 - -3.0 40,738 - +0.3 40,742 - -1.3 40,742 - +0.4 40,911 + -0.3 40,912 - +1.3 40,912 - +0.8 40,912 - -0.1 41,034 + -0.5 41,034 + +1.3 41,034 + +0.5 41,034 + -0.7 41,034 + -0.0 41,035 - -0.8 41,035 - -0.7 41,035 - -0.4 41,035 - +0.2 41,035 - -0.9 41,035 - -0.5 41,035 - +0.7 41,035 - -0.8 41,035 - -0.9 41,035 - +0.8 41,035 - -0.7 41,038 + -0.0 41,208 + Pf6N2E2_12 0.20 -0.4 41,209 - Pf6N2E2_12 0.20 +1.1 41,209 - Pf6N2E2_12 0.20 -0.7 41,221 - Pf6N2E2_12 0.21 +0.8 41,221 - Pf6N2E2_12 0.21 -0.8 41,241 + Pf6N2E2_12 0.24 -0.4 41,262 + Pf6N2E2_12 0.26 -0.9 41,331 + Pf6N2E2_12 0.34 +0.3 41,359 - Pf6N2E2_12 0.37 -0.1 41,484 + Pf6N2E2_12 0.51 -2.0 41,484 + Pf6N2E2_12 0.51 -0.9 41,484 + Pf6N2E2_12 0.51 +0.5 41,485 - Pf6N2E2_12 0.52 -2.0 41,535 + Pf6N2E2_12 0.57 -0.5 41,535 + Pf6N2E2_12 0.57 +0.1 41,535 + Pf6N2E2_12 0.57 -0.0 41,535 + Pf6N2E2_12 0.57 -0.5 41,535 + Pf6N2E2_12 0.57 +0.2 41,536 - Pf6N2E2_12 0.57 -0.4 41,536 - Pf6N2E2_12 0.57 -0.5 41,536 - Pf6N2E2_12 0.57 -0.6 41,623 - Pf6N2E2_12 0.67 +0.2 42,189 + Pf6N2E2_13 0.20 +0.5 42,360 + Pf6N2E2_13 0.33 +2.0 42,361 - Pf6N2E2_13 0.33 -0.1 42,361 - Pf6N2E2_13 0.33 +0.5 42,507 + Pf6N2E2_13 0.45 -0.8 42,508 - Pf6N2E2_13 0.45 -1.0 42,508 - Pf6N2E2_13 0.45 +0.2 42,508 - Pf6N2E2_13 0.45 -0.5 42,508 - Pf6N2E2_13 0.45 -0.7 42,822 + Pf6N2E2_13 0.69 +0.3 42,822 + Pf6N2E2_13 0.69 -0.3 42,822 + Pf6N2E2_13 0.69 +0.3 42,822 + Pf6N2E2_13 0.69 +1.8 42,822 + Pf6N2E2_13 0.69 -0.1 42,823 - Pf6N2E2_13 0.69 +0.5 42,823 - Pf6N2E2_13 0.69 -0.5
Or see this region's nucleotide sequence