Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_988

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_985 and Pf6N2E2_986 are separated by 315 nucleotidesPf6N2E2_986 and Pf6N2E2_987 overlap by 4 nucleotidesPf6N2E2_987 and Pf6N2E2_988 are separated by 247 nucleotidesPf6N2E2_988 and Pf6N2E2_989 are separated by 106 nucleotides Pf6N2E2_985 - Multidrug resistance transporter, Bcr/CflA family, at 1,153,809 to 1,154,945 _985 Pf6N2E2_986 - hypothetical protein, at 1,155,261 to 1,155,383 _986 Pf6N2E2_987 - hypothetical protein, at 1,155,380 to 1,155,616 _987 Pf6N2E2_988 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 1,155,864 to 1,156,721 _988 Pf6N2E2_989 - Transcriptional regulator, LysR family, at 1,156,828 to 1,157,742 _989 Position (kb) 1155 1156 1157Strain fitness (log2 ratio) -3 -2 -1 0 1at 1154.865 kb on - strandat 1155.037 kb on + strandat 1155.038 kb on - strandat 1155.050 kb on + strandat 1155.122 kb on + strandat 1155.122 kb on + strandat 1155.122 kb on + strandat 1155.123 kb on - strandat 1155.141 kb on + strandat 1155.172 kb on + strandat 1155.173 kb on - strandat 1155.299 kb on + strand, within Pf6N2E2_986at 1155.493 kb on + strand, within Pf6N2E2_987at 1155.500 kb on + strand, within Pf6N2E2_987at 1155.500 kb on + strand, within Pf6N2E2_987at 1155.541 kb on - strand, within Pf6N2E2_987at 1155.541 kb on - strand, within Pf6N2E2_987at 1155.603 kb on + strandat 1155.604 kb on - strandat 1155.803 kb on + strandat 1155.865 kb on + strandat 1155.865 kb on + strandat 1155.865 kb on + strandat 1155.865 kb on + strandat 1155.866 kb on - strandat 1155.866 kb on - strandat 1155.866 kb on - strandat 1155.955 kb on - strand, within Pf6N2E2_988at 1156.079 kb on - strand, within Pf6N2E2_988at 1156.136 kb on + strand, within Pf6N2E2_988at 1156.463 kb on - strand, within Pf6N2E2_988at 1156.500 kb on - strand, within Pf6N2E2_988at 1156.589 kb on + strand, within Pf6N2E2_988at 1156.663 kb on + strandat 1156.664 kb on - strandat 1156.664 kb on - strandat 1156.679 kb on + strandat 1156.679 kb on + strandat 1156.688 kb on - strandat 1156.737 kb on - strandat 1156.797 kb on + strandat 1156.798 kb on - strandat 1156.798 kb on - strandat 1156.850 kb on + strandat 1156.850 kb on + strandat 1156.850 kb on + strandat 1156.850 kb on + strandat 1156.850 kb on + strandat 1156.850 kb on + strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.851 kb on - strandat 1156.896 kb on + strandat 1156.896 kb on + strandat 1156.923 kb on + strand, within Pf6N2E2_989at 1156.924 kb on - strand, within Pf6N2E2_989at 1156.926 kb on + strand, within Pf6N2E2_989at 1156.927 kb on - strand, within Pf6N2E2_989at 1156.927 kb on - strandat 1156.927 kb on - strand, within Pf6N2E2_989at 1157.018 kb on + strand, within Pf6N2E2_989at 1157.018 kb on + strand, within Pf6N2E2_989at 1157.018 kb on + strand, within Pf6N2E2_989at 1157.018 kb on + strand, within Pf6N2E2_989at 1157.018 kb on + strand, within Pf6N2E2_989at 1157.019 kb on - strand, within Pf6N2E2_989at 1157.019 kb on - strand, within Pf6N2E2_989at 1157.057 kb on + strand, within Pf6N2E2_989at 1157.057 kb on + strand, within Pf6N2E2_989at 1157.292 kb on + strand, within Pf6N2E2_989at 1157.293 kb on - strand, within Pf6N2E2_989at 1157.303 kb on + strand, within Pf6N2E2_989at 1157.303 kb on + strand, within Pf6N2E2_989at 1157.303 kb on + strand, within Pf6N2E2_989at 1157.303 kb on + strand, within Pf6N2E2_989at 1157.303 kb on + strand, within Pf6N2E2_989at 1157.303 kb on + strand, within Pf6N2E2_989at 1157.304 kb on - strand, within Pf6N2E2_989at 1157.304 kb on - strand, within Pf6N2E2_989at 1157.334 kb on + strand, within Pf6N2E2_989at 1157.334 kb on + strand, within Pf6N2E2_989at 1157.335 kb on - strand, within Pf6N2E2_989at 1157.335 kb on - strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.336 kb on + strand, within Pf6N2E2_989at 1157.337 kb on - strand, within Pf6N2E2_989at 1157.337 kb on - strand, within Pf6N2E2_989at 1157.337 kb on - strand, within Pf6N2E2_989at 1157.337 kb on - strand, within Pf6N2E2_989at 1157.337 kb on - strand, within Pf6N2E2_989at 1157.337 kb on - strand, within Pf6N2E2_989at 1157.337 kb on - strand, within Pf6N2E2_989at 1157.353 kb on + strand, within Pf6N2E2_989at 1157.354 kb on - strand, within Pf6N2E2_989at 1157.573 kb on + strand, within Pf6N2E2_989at 1157.574 kb on - strand, within Pf6N2E2_989at 1157.574 kb on - strand, within Pf6N2E2_989at 1157.623 kb on + strand, within Pf6N2E2_989at 1157.654 kb on + strandat 1157.711 kb on + strandat 1157.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,154,865 - +1.1
1,155,037 + +1.4
1,155,038 - +1.7
1,155,050 + +0.4
1,155,122 + +0.8
1,155,122 + +1.0
1,155,122 + +0.7
1,155,123 - +0.9
1,155,141 + -0.8
1,155,172 + -0.0
1,155,173 - -0.2
1,155,299 + Pf6N2E2_986 0.31 -0.8
1,155,493 + Pf6N2E2_987 0.48 -1.0
1,155,500 + Pf6N2E2_987 0.51 -0.2
1,155,500 + Pf6N2E2_987 0.51 -0.7
1,155,541 - Pf6N2E2_987 0.68 -1.2
1,155,541 - Pf6N2E2_987 0.68 +0.1
1,155,603 + +0.8
1,155,604 - -1.3
1,155,803 + -0.0
1,155,865 + +1.1
1,155,865 + -1.0
1,155,865 + -0.2
1,155,865 + -0.1
1,155,866 - +0.1
1,155,866 - +0.9
1,155,866 - -0.7
1,155,955 - Pf6N2E2_988 0.11 +0.6
1,156,079 - Pf6N2E2_988 0.25 +0.4
1,156,136 + Pf6N2E2_988 0.32 -0.6
1,156,463 - Pf6N2E2_988 0.70 +0.6
1,156,500 - Pf6N2E2_988 0.74 -1.3
1,156,589 + Pf6N2E2_988 0.84 +1.0
1,156,663 + +0.4
1,156,664 - -0.5
1,156,664 - -0.3
1,156,679 + +0.3
1,156,679 + -0.4
1,156,688 - +0.0
1,156,737 - +0.2
1,156,797 + -0.7
1,156,798 - -1.0
1,156,798 - -0.5
1,156,850 + +0.8
1,156,850 + -0.2
1,156,850 + -0.2
1,156,850 + -0.4
1,156,850 + -0.5
1,156,850 + +0.5
1,156,851 - +0.1
1,156,851 - +0.7
1,156,851 - +0.1
1,156,851 - -1.9
1,156,851 - -0.1
1,156,851 - +0.0
1,156,851 - +0.1
1,156,851 - -0.8
1,156,851 - +1.0
1,156,896 + -1.3
1,156,896 + -0.1
1,156,923 + Pf6N2E2_989 0.10 +0.8
1,156,924 - Pf6N2E2_989 0.10 -0.2
1,156,926 + Pf6N2E2_989 0.11 -0.2
1,156,927 - Pf6N2E2_989 0.11 +0.5
1,156,927 - -0.2
1,156,927 - Pf6N2E2_989 0.11 +0.4
1,157,018 + Pf6N2E2_989 0.21 +1.2
1,157,018 + Pf6N2E2_989 0.21 +0.8
1,157,018 + Pf6N2E2_989 0.21 -0.8
1,157,018 + Pf6N2E2_989 0.21 +0.2
1,157,018 + Pf6N2E2_989 0.21 +1.0
1,157,019 - Pf6N2E2_989 0.21 +0.6
1,157,019 - Pf6N2E2_989 0.21 -0.0
1,157,057 + Pf6N2E2_989 0.25 -0.5
1,157,057 + Pf6N2E2_989 0.25 +0.2
1,157,292 + Pf6N2E2_989 0.51 -0.1
1,157,293 - Pf6N2E2_989 0.51 -0.3
1,157,303 + Pf6N2E2_989 0.52 +1.2
1,157,303 + Pf6N2E2_989 0.52 +1.0
1,157,303 + Pf6N2E2_989 0.52 +0.4
1,157,303 + Pf6N2E2_989 0.52 -0.2
1,157,303 + Pf6N2E2_989 0.52 -1.2
1,157,303 + Pf6N2E2_989 0.52 -0.5
1,157,304 - Pf6N2E2_989 0.52 +0.4
1,157,304 - Pf6N2E2_989 0.52 -0.4
1,157,334 + Pf6N2E2_989 0.55 +0.2
1,157,334 + Pf6N2E2_989 0.55 +0.6
1,157,335 - Pf6N2E2_989 0.55 +0.4
1,157,335 - Pf6N2E2_989 0.55 +0.9
1,157,336 + Pf6N2E2_989 0.56 -0.1
1,157,336 + Pf6N2E2_989 0.56 -3.0
1,157,336 + Pf6N2E2_989 0.56 +0.3
1,157,336 + Pf6N2E2_989 0.56 +0.2
1,157,336 + Pf6N2E2_989 0.56 -0.9
1,157,336 + Pf6N2E2_989 0.56 +1.2
1,157,336 + Pf6N2E2_989 0.56 +0.8
1,157,336 + Pf6N2E2_989 0.56 +0.1
1,157,336 + Pf6N2E2_989 0.56 +1.2
1,157,336 + Pf6N2E2_989 0.56 +0.6
1,157,336 + Pf6N2E2_989 0.56 +1.0
1,157,336 + Pf6N2E2_989 0.56 +0.2
1,157,336 + Pf6N2E2_989 0.56 -0.2
1,157,336 + Pf6N2E2_989 0.56 +0.7
1,157,337 - Pf6N2E2_989 0.56 -1.1
1,157,337 - Pf6N2E2_989 0.56 -1.6
1,157,337 - Pf6N2E2_989 0.56 -0.1
1,157,337 - Pf6N2E2_989 0.56 +0.7
1,157,337 - Pf6N2E2_989 0.56 +0.1
1,157,337 - Pf6N2E2_989 0.56 +1.0
1,157,337 - Pf6N2E2_989 0.56 -1.1
1,157,353 + Pf6N2E2_989 0.57 -0.2
1,157,354 - Pf6N2E2_989 0.57 -1.2
1,157,573 + Pf6N2E2_989 0.81 +0.9
1,157,574 - Pf6N2E2_989 0.82 +0.2
1,157,574 - Pf6N2E2_989 0.82 -0.8
1,157,623 + Pf6N2E2_989 0.87 +0.1
1,157,654 + -0.3
1,157,711 + -0.5
1,157,712 - -0.2

Or see this region's nucleotide sequence