Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_985 and Pf6N2E2_986 are separated by 315 nucleotides Pf6N2E2_986 and Pf6N2E2_987 overlap by 4 nucleotides Pf6N2E2_987 and Pf6N2E2_988 are separated by 247 nucleotides Pf6N2E2_988 and Pf6N2E2_989 are separated by 106 nucleotides
Pf6N2E2_985 - Multidrug resistance transporter, Bcr/CflA family, at 1,153,809 to 1,154,945
_985
Pf6N2E2_986 - hypothetical protein, at 1,155,261 to 1,155,383
_986
Pf6N2E2_987 - hypothetical protein, at 1,155,380 to 1,155,616
_987
Pf6N2E2_988 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 1,155,864 to 1,156,721
_988
Pf6N2E2_989 - Transcriptional regulator, LysR family, at 1,156,828 to 1,157,742
_989
Position (kb)
1155
1156
1157 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1154.865 kb on - strand at 1155.037 kb on + strand at 1155.038 kb on - strand at 1155.050 kb on + strand at 1155.122 kb on + strand at 1155.122 kb on + strand at 1155.122 kb on + strand at 1155.123 kb on - strand at 1155.141 kb on + strand at 1155.172 kb on + strand at 1155.173 kb on - strand at 1155.299 kb on + strand, within Pf6N2E2_986 at 1155.493 kb on + strand, within Pf6N2E2_987 at 1155.500 kb on + strand, within Pf6N2E2_987 at 1155.500 kb on + strand, within Pf6N2E2_987 at 1155.541 kb on - strand, within Pf6N2E2_987 at 1155.541 kb on - strand, within Pf6N2E2_987 at 1155.603 kb on + strand at 1155.604 kb on - strand at 1155.803 kb on + strand at 1155.865 kb on + strand at 1155.865 kb on + strand at 1155.865 kb on + strand at 1155.865 kb on + strand at 1155.866 kb on - strand at 1155.866 kb on - strand at 1155.866 kb on - strand at 1155.955 kb on - strand, within Pf6N2E2_988 at 1156.079 kb on - strand, within Pf6N2E2_988 at 1156.136 kb on + strand, within Pf6N2E2_988 at 1156.463 kb on - strand, within Pf6N2E2_988 at 1156.500 kb on - strand, within Pf6N2E2_988 at 1156.589 kb on + strand, within Pf6N2E2_988 at 1156.663 kb on + strand at 1156.664 kb on - strand at 1156.664 kb on - strand at 1156.679 kb on + strand at 1156.679 kb on + strand at 1156.688 kb on - strand at 1156.737 kb on - strand at 1156.797 kb on + strand at 1156.798 kb on - strand at 1156.798 kb on - strand at 1156.850 kb on + strand at 1156.850 kb on + strand at 1156.850 kb on + strand at 1156.850 kb on + strand at 1156.850 kb on + strand at 1156.850 kb on + strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.851 kb on - strand at 1156.896 kb on + strand at 1156.896 kb on + strand at 1156.923 kb on + strand, within Pf6N2E2_989 at 1156.924 kb on - strand, within Pf6N2E2_989 at 1156.926 kb on + strand, within Pf6N2E2_989 at 1156.927 kb on - strand, within Pf6N2E2_989 at 1156.927 kb on - strand at 1156.927 kb on - strand, within Pf6N2E2_989 at 1157.018 kb on + strand, within Pf6N2E2_989 at 1157.018 kb on + strand, within Pf6N2E2_989 at 1157.018 kb on + strand, within Pf6N2E2_989 at 1157.018 kb on + strand, within Pf6N2E2_989 at 1157.018 kb on + strand, within Pf6N2E2_989 at 1157.019 kb on - strand, within Pf6N2E2_989 at 1157.019 kb on - strand, within Pf6N2E2_989 at 1157.057 kb on + strand, within Pf6N2E2_989 at 1157.057 kb on + strand, within Pf6N2E2_989 at 1157.292 kb on + strand, within Pf6N2E2_989 at 1157.293 kb on - strand, within Pf6N2E2_989 at 1157.303 kb on + strand, within Pf6N2E2_989 at 1157.303 kb on + strand, within Pf6N2E2_989 at 1157.303 kb on + strand, within Pf6N2E2_989 at 1157.303 kb on + strand, within Pf6N2E2_989 at 1157.303 kb on + strand, within Pf6N2E2_989 at 1157.303 kb on + strand, within Pf6N2E2_989 at 1157.304 kb on - strand, within Pf6N2E2_989 at 1157.304 kb on - strand, within Pf6N2E2_989 at 1157.334 kb on + strand, within Pf6N2E2_989 at 1157.334 kb on + strand, within Pf6N2E2_989 at 1157.335 kb on - strand, within Pf6N2E2_989 at 1157.335 kb on - strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.336 kb on + strand, within Pf6N2E2_989 at 1157.337 kb on - strand, within Pf6N2E2_989 at 1157.337 kb on - strand, within Pf6N2E2_989 at 1157.337 kb on - strand, within Pf6N2E2_989 at 1157.337 kb on - strand, within Pf6N2E2_989 at 1157.337 kb on - strand, within Pf6N2E2_989 at 1157.337 kb on - strand, within Pf6N2E2_989 at 1157.337 kb on - strand, within Pf6N2E2_989 at 1157.353 kb on + strand, within Pf6N2E2_989 at 1157.354 kb on - strand, within Pf6N2E2_989 at 1157.573 kb on + strand, within Pf6N2E2_989 at 1157.574 kb on - strand, within Pf6N2E2_989 at 1157.574 kb on - strand, within Pf6N2E2_989 at 1157.623 kb on + strand, within Pf6N2E2_989 at 1157.654 kb on + strand at 1157.711 kb on + strand at 1157.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,154,865 - +1.1 1,155,037 + +1.4 1,155,038 - +1.7 1,155,050 + +0.4 1,155,122 + +0.8 1,155,122 + +1.0 1,155,122 + +0.7 1,155,123 - +0.9 1,155,141 + -0.8 1,155,172 + -0.0 1,155,173 - -0.2 1,155,299 + Pf6N2E2_986 0.31 -0.8 1,155,493 + Pf6N2E2_987 0.48 -1.0 1,155,500 + Pf6N2E2_987 0.51 -0.2 1,155,500 + Pf6N2E2_987 0.51 -0.7 1,155,541 - Pf6N2E2_987 0.68 -1.2 1,155,541 - Pf6N2E2_987 0.68 +0.1 1,155,603 + +0.8 1,155,604 - -1.3 1,155,803 + -0.0 1,155,865 + +1.1 1,155,865 + -1.0 1,155,865 + -0.2 1,155,865 + -0.1 1,155,866 - +0.1 1,155,866 - +0.9 1,155,866 - -0.7 1,155,955 - Pf6N2E2_988 0.11 +0.6 1,156,079 - Pf6N2E2_988 0.25 +0.4 1,156,136 + Pf6N2E2_988 0.32 -0.6 1,156,463 - Pf6N2E2_988 0.70 +0.6 1,156,500 - Pf6N2E2_988 0.74 -1.3 1,156,589 + Pf6N2E2_988 0.84 +1.0 1,156,663 + +0.4 1,156,664 - -0.5 1,156,664 - -0.3 1,156,679 + +0.3 1,156,679 + -0.4 1,156,688 - +0.0 1,156,737 - +0.2 1,156,797 + -0.7 1,156,798 - -1.0 1,156,798 - -0.5 1,156,850 + +0.8 1,156,850 + -0.2 1,156,850 + -0.2 1,156,850 + -0.4 1,156,850 + -0.5 1,156,850 + +0.5 1,156,851 - +0.1 1,156,851 - +0.7 1,156,851 - +0.1 1,156,851 - -1.9 1,156,851 - -0.1 1,156,851 - +0.0 1,156,851 - +0.1 1,156,851 - -0.8 1,156,851 - +1.0 1,156,896 + -1.3 1,156,896 + -0.1 1,156,923 + Pf6N2E2_989 0.10 +0.8 1,156,924 - Pf6N2E2_989 0.10 -0.2 1,156,926 + Pf6N2E2_989 0.11 -0.2 1,156,927 - Pf6N2E2_989 0.11 +0.5 1,156,927 - -0.2 1,156,927 - Pf6N2E2_989 0.11 +0.4 1,157,018 + Pf6N2E2_989 0.21 +1.2 1,157,018 + Pf6N2E2_989 0.21 +0.8 1,157,018 + Pf6N2E2_989 0.21 -0.8 1,157,018 + Pf6N2E2_989 0.21 +0.2 1,157,018 + Pf6N2E2_989 0.21 +1.0 1,157,019 - Pf6N2E2_989 0.21 +0.6 1,157,019 - Pf6N2E2_989 0.21 -0.0 1,157,057 + Pf6N2E2_989 0.25 -0.5 1,157,057 + Pf6N2E2_989 0.25 +0.2 1,157,292 + Pf6N2E2_989 0.51 -0.1 1,157,293 - Pf6N2E2_989 0.51 -0.3 1,157,303 + Pf6N2E2_989 0.52 +1.2 1,157,303 + Pf6N2E2_989 0.52 +1.0 1,157,303 + Pf6N2E2_989 0.52 +0.4 1,157,303 + Pf6N2E2_989 0.52 -0.2 1,157,303 + Pf6N2E2_989 0.52 -1.2 1,157,303 + Pf6N2E2_989 0.52 -0.5 1,157,304 - Pf6N2E2_989 0.52 +0.4 1,157,304 - Pf6N2E2_989 0.52 -0.4 1,157,334 + Pf6N2E2_989 0.55 +0.2 1,157,334 + Pf6N2E2_989 0.55 +0.6 1,157,335 - Pf6N2E2_989 0.55 +0.4 1,157,335 - Pf6N2E2_989 0.55 +0.9 1,157,336 + Pf6N2E2_989 0.56 -0.1 1,157,336 + Pf6N2E2_989 0.56 -3.0 1,157,336 + Pf6N2E2_989 0.56 +0.3 1,157,336 + Pf6N2E2_989 0.56 +0.2 1,157,336 + Pf6N2E2_989 0.56 -0.9 1,157,336 + Pf6N2E2_989 0.56 +1.2 1,157,336 + Pf6N2E2_989 0.56 +0.8 1,157,336 + Pf6N2E2_989 0.56 +0.1 1,157,336 + Pf6N2E2_989 0.56 +1.2 1,157,336 + Pf6N2E2_989 0.56 +0.6 1,157,336 + Pf6N2E2_989 0.56 +1.0 1,157,336 + Pf6N2E2_989 0.56 +0.2 1,157,336 + Pf6N2E2_989 0.56 -0.2 1,157,336 + Pf6N2E2_989 0.56 +0.7 1,157,337 - Pf6N2E2_989 0.56 -1.1 1,157,337 - Pf6N2E2_989 0.56 -1.6 1,157,337 - Pf6N2E2_989 0.56 -0.1 1,157,337 - Pf6N2E2_989 0.56 +0.7 1,157,337 - Pf6N2E2_989 0.56 +0.1 1,157,337 - Pf6N2E2_989 0.56 +1.0 1,157,337 - Pf6N2E2_989 0.56 -1.1 1,157,353 + Pf6N2E2_989 0.57 -0.2 1,157,354 - Pf6N2E2_989 0.57 -1.2 1,157,573 + Pf6N2E2_989 0.81 +0.9 1,157,574 - Pf6N2E2_989 0.82 +0.2 1,157,574 - Pf6N2E2_989 0.82 -0.8 1,157,623 + Pf6N2E2_989 0.87 +0.1 1,157,654 + -0.3 1,157,711 + -0.5 1,157,712 - -0.2
Or see this region's nucleotide sequence