Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_635 and Pf6N2E2_636 are separated by 293 nucleotides Pf6N2E2_636 and Pf6N2E2_637 are separated by 125 nucleotides Pf6N2E2_637 and Pf6N2E2_638 are separated by 195 nucleotides Pf6N2E2_638 and Pf6N2E2_639 are separated by 180 nucleotides
Pf6N2E2_635 - hypothetical protein, at 727,734 to 728,138
_635
Pf6N2E2_636 - FIG00954888: hypothetical protein, at 728,432 to 728,725
_636
Pf6N2E2_637 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 728,851 to 730,284
_637
Pf6N2E2_638 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 730,480 to 730,920
_638
Pf6N2E2_639 - FIG01285020: hypothetical protein, at 731,101 to 731,442
_639
Position (kb) 728
729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2 at 727.856 kb on - strand, within Pf6N2E2_635 at 727.876 kb on + strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.984 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.047 kb on - strand, within Pf6N2E2_635 at 728.083 kb on + strand, within Pf6N2E2_635 at 728.084 kb on - strand, within Pf6N2E2_635 at 728.196 kb on + strand at 728.196 kb on + strand at 728.197 kb on - strand at 728.244 kb on + strand at 728.424 kb on - strand at 728.449 kb on + strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.603 kb on - strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.699 kb on + strand at 728.700 kb on - strand at 728.871 kb on + strand at 728.982 kb on - strand at 729.058 kb on - strand, within Pf6N2E2_637 at 729.344 kb on + strand, within Pf6N2E2_637 at 729.453 kb on - strand, within Pf6N2E2_637 at 729.531 kb on - strand, within Pf6N2E2_637 at 729.825 kb on - strand, within Pf6N2E2_637 at 729.825 kb on - strand, within Pf6N2E2_637 at 730.061 kb on + strand, within Pf6N2E2_637 at 730.061 kb on + strand, within Pf6N2E2_637 at 730.061 kb on + strand, within Pf6N2E2_637 at 730.062 kb on - strand, within Pf6N2E2_637 at 730.062 kb on - strand, within Pf6N2E2_637 at 730.101 kb on - strand, within Pf6N2E2_637 at 730.101 kb on - strand, within Pf6N2E2_637 at 730.115 kb on + strand, within Pf6N2E2_637 at 730.116 kb on - strand, within Pf6N2E2_637 at 730.232 kb on + strand at 730.233 kb on - strand at 730.233 kb on - strand at 730.233 kb on - strand at 730.358 kb on + strand at 730.359 kb on - strand at 730.426 kb on + strand at 730.498 kb on + strand at 730.498 kb on + strand at 730.501 kb on + strand at 730.501 kb on + strand at 730.502 kb on - strand at 730.502 kb on - strand at 730.502 kb on - strand at 730.502 kb on - strand at 730.502 kb on - strand at 730.801 kb on + strand, within Pf6N2E2_638 at 730.801 kb on + strand, within Pf6N2E2_638 at 730.802 kb on - strand, within Pf6N2E2_638 at 730.802 kb on - strand, within Pf6N2E2_638 at 731.029 kb on - strand at 731.103 kb on - strand at 731.169 kb on + strand, within Pf6N2E2_639 at 731.170 kb on - strand, within Pf6N2E2_639 at 731.170 kb on - strand, within Pf6N2E2_639 at 731.170 kb on - strand, within Pf6N2E2_639 at 731.170 kb on - strand, within Pf6N2E2_639
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 727,856 - Pf6N2E2_635 0.30 +0.9 727,876 + Pf6N2E2_635 0.35 -1.8 727,877 - Pf6N2E2_635 0.35 +1.1 727,877 - Pf6N2E2_635 0.35 +0.3 727,930 + Pf6N2E2_635 0.48 +0.2 727,930 + Pf6N2E2_635 0.48 +0.2 727,930 + Pf6N2E2_635 0.48 -0.4 727,930 + Pf6N2E2_635 0.48 +0.4 727,931 - Pf6N2E2_635 0.49 -0.8 727,931 - Pf6N2E2_635 0.49 -0.6 727,931 - Pf6N2E2_635 0.49 -0.3 727,931 - Pf6N2E2_635 0.49 +0.6 727,931 - Pf6N2E2_635 0.49 -0.1 727,984 + Pf6N2E2_635 0.62 +0.3 728,046 + Pf6N2E2_635 0.77 -0.8 728,046 + Pf6N2E2_635 0.77 -0.4 728,046 + Pf6N2E2_635 0.77 -0.1 728,047 - Pf6N2E2_635 0.77 -0.3 728,083 + Pf6N2E2_635 0.86 +0.3 728,084 - Pf6N2E2_635 0.86 +0.2 728,196 + -1.1 728,196 + +1.3 728,197 - -0.4 728,244 + -0.2 728,424 - -0.7 728,449 + +2.1 728,450 - -1.2 728,450 - -0.2 728,450 - -0.7 728,602 + Pf6N2E2_636 0.58 +0.1 728,602 + Pf6N2E2_636 0.58 +0.9 728,602 + Pf6N2E2_636 0.58 +1.1 728,602 + Pf6N2E2_636 0.58 -0.2 728,602 + Pf6N2E2_636 0.58 +1.1 728,603 - Pf6N2E2_636 0.58 +1.1 728,604 + Pf6N2E2_636 0.59 -0.8 728,604 + Pf6N2E2_636 0.59 -0.0 728,604 + Pf6N2E2_636 0.59 +1.1 728,604 + Pf6N2E2_636 0.59 -1.2 728,605 - Pf6N2E2_636 0.59 -0.1 728,605 - Pf6N2E2_636 0.59 +0.4 728,605 - Pf6N2E2_636 0.59 +0.2 728,605 - Pf6N2E2_636 0.59 +0.1 728,605 - Pf6N2E2_636 0.59 +1.0 728,605 - Pf6N2E2_636 0.59 +0.5 728,699 + +0.7 728,700 - +0.9 728,871 + -0.1 728,982 - +0.3 729,058 - Pf6N2E2_637 0.14 -0.1 729,344 + Pf6N2E2_637 0.34 -0.5 729,453 - Pf6N2E2_637 0.42 -0.0 729,531 - Pf6N2E2_637 0.47 +0.1 729,825 - Pf6N2E2_637 0.68 +0.5 729,825 - Pf6N2E2_637 0.68 -0.2 730,061 + Pf6N2E2_637 0.84 -0.4 730,061 + Pf6N2E2_637 0.84 -1.0 730,061 + Pf6N2E2_637 0.84 -0.8 730,062 - Pf6N2E2_637 0.84 -0.4 730,062 - Pf6N2E2_637 0.84 +1.3 730,101 - Pf6N2E2_637 0.87 +0.1 730,101 - Pf6N2E2_637 0.87 -0.5 730,115 + Pf6N2E2_637 0.88 +0.9 730,116 - Pf6N2E2_637 0.88 -0.5 730,232 + -0.9 730,233 - +0.2 730,233 - +1.2 730,233 - +0.3 730,358 + -0.3 730,359 - +2.5 730,426 + -0.1 730,498 + +0.2 730,498 + -0.1 730,501 + -1.3 730,501 + -0.7 730,502 - -0.4 730,502 - +0.3 730,502 - +0.4 730,502 - -1.5 730,502 - +0.4 730,801 + Pf6N2E2_638 0.73 +0.1 730,801 + Pf6N2E2_638 0.73 +0.2 730,802 - Pf6N2E2_638 0.73 +0.2 730,802 - Pf6N2E2_638 0.73 +0.7 731,029 - -0.2 731,103 - +1.8 731,169 + Pf6N2E2_639 0.20 -2.0 731,170 - Pf6N2E2_639 0.20 -0.0 731,170 - Pf6N2E2_639 0.20 -0.3 731,170 - Pf6N2E2_639 0.20 +0.7 731,170 - Pf6N2E2_639 0.20 +0.5
Or see this region's nucleotide sequence