Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_540

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_538 and Pf6N2E2_539 are separated by 6 nucleotidesPf6N2E2_539 and Pf6N2E2_540 overlap by 4 nucleotidesPf6N2E2_540 and Pf6N2E2_541 are separated by 147 nucleotides Pf6N2E2_538 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 604,870 to 607,794 _538 Pf6N2E2_539 - hypothetical protein, at 607,801 to 608,004 _539 Pf6N2E2_540 - Permease of the drug/metabolite transporter (DMT) superfamily, at 608,001 to 608,870 _540 Pf6N2E2_541 - Transcriptional regulator, Cro/CI family, at 609,018 to 609,581 _541 Position (kb) 608 609Strain fitness (log2 ratio) -2 -1 0 1 2at 607.067 kb on + strand, within Pf6N2E2_538at 607.067 kb on + strand, within Pf6N2E2_538at 607.195 kb on + strand, within Pf6N2E2_538at 607.195 kb on + strand, within Pf6N2E2_538at 607.195 kb on + strand, within Pf6N2E2_538at 607.195 kb on + strand, within Pf6N2E2_538at 607.195 kb on + strand, within Pf6N2E2_538at 607.195 kb on + strand, within Pf6N2E2_538at 607.196 kb on - strand, within Pf6N2E2_538at 607.233 kb on - strand, within Pf6N2E2_538at 607.233 kb on - strand, within Pf6N2E2_538at 607.233 kb on - strand, within Pf6N2E2_538at 607.233 kb on - strand, within Pf6N2E2_538at 607.233 kb on - strand, within Pf6N2E2_538at 607.311 kb on + strand, within Pf6N2E2_538at 607.312 kb on - strand, within Pf6N2E2_538at 607.312 kb on - strand, within Pf6N2E2_538at 607.312 kb on - strand, within Pf6N2E2_538at 607.312 kb on - strand, within Pf6N2E2_538at 607.312 kb on - strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.313 kb on + strand, within Pf6N2E2_538at 607.314 kb on - strand, within Pf6N2E2_538at 607.314 kb on - strand, within Pf6N2E2_538at 607.314 kb on - strand, within Pf6N2E2_538at 607.314 kb on - strand, within Pf6N2E2_538at 607.314 kb on - strand, within Pf6N2E2_538at 607.314 kb on - strand, within Pf6N2E2_538at 607.314 kb on - strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.499 kb on + strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.500 kb on - strand, within Pf6N2E2_538at 607.511 kb on + strandat 607.512 kb on - strandat 607.616 kb on + strandat 607.616 kb on + strandat 607.617 kb on - strandat 607.617 kb on - strandat 607.617 kb on - strandat 607.617 kb on - strandat 607.617 kb on - strandat 607.617 kb on - strandat 607.777 kb on + strandat 607.777 kb on + strandat 607.777 kb on + strandat 607.783 kb on + strandat 607.784 kb on - strandat 607.784 kb on - strandat 607.784 kb on - strandat 607.794 kb on + strandat 607.794 kb on + strandat 607.795 kb on - strandat 607.795 kb on - strandat 607.795 kb on - strandat 607.802 kb on + strandat 607.803 kb on - strandat 607.829 kb on + strand, within Pf6N2E2_539at 607.830 kb on - strand, within Pf6N2E2_539at 607.830 kb on - strand, within Pf6N2E2_539at 607.876 kb on + strand, within Pf6N2E2_539at 607.877 kb on - strand, within Pf6N2E2_539at 607.883 kb on + strand, within Pf6N2E2_539at 607.883 kb on + strand, within Pf6N2E2_539at 607.883 kb on + strand, within Pf6N2E2_539at 607.883 kb on + strand, within Pf6N2E2_539at 607.883 kb on + strand, within Pf6N2E2_539at 607.884 kb on - strand, within Pf6N2E2_539at 607.884 kb on - strand, within Pf6N2E2_539at 607.884 kb on - strand, within Pf6N2E2_539at 607.884 kb on - strand, within Pf6N2E2_539at 607.884 kb on - strand, within Pf6N2E2_539at 607.884 kb on - strand, within Pf6N2E2_539at 607.884 kb on - strand, within Pf6N2E2_539at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.596 kb on + strand, within Pf6N2E2_540at 608.596 kb on + strand, within Pf6N2E2_540at 608.597 kb on - strand, within Pf6N2E2_540at 608.597 kb on - strand, within Pf6N2E2_540at 608.985 kb on + strandat 608.985 kb on + strandat 608.986 kb on - strandat 608.986 kb on - strandat 609.015 kb on - strandat 609.017 kb on - strandat 609.220 kb on + strand, within Pf6N2E2_541at 609.387 kb on + strand, within Pf6N2E2_541at 609.388 kb on - strand, within Pf6N2E2_541at 609.429 kb on + strand, within Pf6N2E2_541at 609.429 kb on + strand, within Pf6N2E2_541at 609.429 kb on + strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.562 kb on + strandat 609.629 kb on + strandat 609.629 kb on + strandat 609.630 kb on - strandat 609.650 kb on + strandat 609.650 kb on + strandat 609.651 kb on - strandat 609.651 kb on - strandat 609.686 kb on + strandat 609.687 kb on - strandat 609.710 kb on - strandat 609.747 kb on + strandat 609.747 kb on + strandat 609.748 kb on - strandat 609.752 kb on + strandat 609.753 kb on - strandat 609.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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607,067 + Pf6N2E2_538 0.75 -0.3
607,067 + Pf6N2E2_538 0.75 -0.0
607,195 + Pf6N2E2_538 0.79 +0.3
607,195 + Pf6N2E2_538 0.79 +2.4
607,195 + Pf6N2E2_538 0.79 +0.7
607,195 + Pf6N2E2_538 0.79 -0.2
607,195 + Pf6N2E2_538 0.79 -0.2
607,195 + Pf6N2E2_538 0.79 +0.3
607,196 - Pf6N2E2_538 0.80 +0.4
607,233 - Pf6N2E2_538 0.81 +0.1
607,233 - Pf6N2E2_538 0.81 -0.0
607,233 - Pf6N2E2_538 0.81 +1.0
607,233 - Pf6N2E2_538 0.81 +0.4
607,233 - Pf6N2E2_538 0.81 +0.8
607,311 + Pf6N2E2_538 0.83 -0.1
607,312 - Pf6N2E2_538 0.83 -2.2
607,312 - Pf6N2E2_538 0.83 -0.6
607,312 - Pf6N2E2_538 0.83 +0.6
607,312 - Pf6N2E2_538 0.83 -0.9
607,312 - Pf6N2E2_538 0.83 -0.1
607,313 + Pf6N2E2_538 0.84 -0.5
607,313 + Pf6N2E2_538 0.84 -1.5
607,313 + Pf6N2E2_538 0.84 -0.4
607,313 + Pf6N2E2_538 0.84 -0.4
607,313 + Pf6N2E2_538 0.84 +0.7
607,313 + Pf6N2E2_538 0.84 -0.5
607,313 + Pf6N2E2_538 0.84 +0.3
607,313 + Pf6N2E2_538 0.84 -0.6
607,313 + Pf6N2E2_538 0.84 -1.8
607,314 - Pf6N2E2_538 0.84 -0.3
607,314 - Pf6N2E2_538 0.84 +0.2
607,314 - Pf6N2E2_538 0.84 +0.5
607,314 - Pf6N2E2_538 0.84 +0.2
607,314 - Pf6N2E2_538 0.84 +1.8
607,314 - Pf6N2E2_538 0.84 -0.9
607,314 - Pf6N2E2_538 0.84 +0.2
607,499 + Pf6N2E2_538 0.90 -0.7
607,499 + Pf6N2E2_538 0.90 +0.3
607,499 + Pf6N2E2_538 0.90 -0.4
607,499 + Pf6N2E2_538 0.90 -0.0
607,499 + Pf6N2E2_538 0.90 -0.6
607,499 + Pf6N2E2_538 0.90 -0.4
607,499 + Pf6N2E2_538 0.90 +0.8
607,499 + Pf6N2E2_538 0.90 +0.7
607,499 + Pf6N2E2_538 0.90 +0.0
607,500 - Pf6N2E2_538 0.90 -1.6
607,500 - Pf6N2E2_538 0.90 -0.5
607,500 - Pf6N2E2_538 0.90 -0.1
607,500 - Pf6N2E2_538 0.90 -1.7
607,500 - Pf6N2E2_538 0.90 -0.8
607,500 - Pf6N2E2_538 0.90 -0.4
607,500 - Pf6N2E2_538 0.90 +0.2
607,500 - Pf6N2E2_538 0.90 -1.1
607,500 - Pf6N2E2_538 0.90 -1.1
607,500 - Pf6N2E2_538 0.90 -0.8
607,500 - Pf6N2E2_538 0.90 +0.3
607,511 + -0.4
607,512 - -0.9
607,616 + +0.7
607,616 + +0.3
607,617 - -0.2
607,617 - -0.3
607,617 - -0.8
607,617 - -0.3
607,617 - +0.4
607,617 - +0.5
607,777 + +0.3
607,777 + -0.0
607,777 + -0.0
607,783 + +1.0
607,784 - -0.8
607,784 - +0.0
607,784 - +0.4
607,794 + +0.0
607,794 + -1.0
607,795 - -0.5
607,795 - -0.5
607,795 - -0.3
607,802 + -0.6
607,803 - -0.8
607,829 + Pf6N2E2_539 0.14 +1.1
607,830 - Pf6N2E2_539 0.14 +0.5
607,830 - Pf6N2E2_539 0.14 -0.9
607,876 + Pf6N2E2_539 0.37 +1.1
607,877 - Pf6N2E2_539 0.37 +0.3
607,883 + Pf6N2E2_539 0.40 -0.2
607,883 + Pf6N2E2_539 0.40 -0.2
607,883 + Pf6N2E2_539 0.40 -0.5
607,883 + Pf6N2E2_539 0.40 +0.1
607,883 + Pf6N2E2_539 0.40 +2.7
607,884 - Pf6N2E2_539 0.41 +0.4
607,884 - Pf6N2E2_539 0.41 +0.1
607,884 - Pf6N2E2_539 0.41 -0.3
607,884 - Pf6N2E2_539 0.41 +0.8
607,884 - Pf6N2E2_539 0.41 +0.3
607,884 - Pf6N2E2_539 0.41 +0.1
607,884 - Pf6N2E2_539 0.41 +0.1
608,173 + Pf6N2E2_540 0.20 -0.2
608,173 + Pf6N2E2_540 0.20 +0.5
608,173 + Pf6N2E2_540 0.20 +0.9
608,173 + Pf6N2E2_540 0.20 +0.9
608,173 + Pf6N2E2_540 0.20 +0.8
608,173 + Pf6N2E2_540 0.20 +0.1
608,173 + Pf6N2E2_540 0.20 -0.0
608,174 - Pf6N2E2_540 0.20 -0.2
608,174 - Pf6N2E2_540 0.20 +0.4
608,174 - Pf6N2E2_540 0.20 +0.3
608,174 - Pf6N2E2_540 0.20 -0.3
608,174 - Pf6N2E2_540 0.20 +0.6
608,174 - Pf6N2E2_540 0.20 -0.2
608,174 - Pf6N2E2_540 0.20 +0.7
608,174 - Pf6N2E2_540 0.20 -0.1
608,174 - Pf6N2E2_540 0.20 +0.0
608,174 - Pf6N2E2_540 0.20 +0.4
608,596 + Pf6N2E2_540 0.68 -0.5
608,596 + Pf6N2E2_540 0.68 +0.9
608,597 - Pf6N2E2_540 0.69 -0.9
608,597 - Pf6N2E2_540 0.69 +0.5
608,985 + +2.1
608,985 + -0.6
608,986 - -0.1
608,986 - -0.4
609,015 - -0.1
609,017 - -1.0
609,220 + Pf6N2E2_541 0.36 -0.9
609,387 + Pf6N2E2_541 0.65 +0.8
609,388 - Pf6N2E2_541 0.66 +0.9
609,429 + Pf6N2E2_541 0.73 +0.1
609,429 + Pf6N2E2_541 0.73 -0.1
609,429 + Pf6N2E2_541 0.73 +0.4
609,430 - Pf6N2E2_541 0.73 -0.3
609,430 - Pf6N2E2_541 0.73 +1.2
609,430 - Pf6N2E2_541 0.73 -0.3
609,430 - Pf6N2E2_541 0.73 +0.1
609,430 - Pf6N2E2_541 0.73 -0.4
609,430 - Pf6N2E2_541 0.73 +0.7
609,430 - Pf6N2E2_541 0.73 -0.6
609,430 - Pf6N2E2_541 0.73 +1.0
609,430 - Pf6N2E2_541 0.73 +0.2
609,562 + -0.3
609,629 + +0.4
609,629 + -1.0
609,630 - +0.7
609,650 + -0.3
609,650 + -0.6
609,651 - -0.5
609,651 - +0.9
609,686 + -0.5
609,687 - +0.6
609,710 - +0.6
609,747 + -0.2
609,747 + -0.3
609,748 - -1.1
609,752 + -0.5
609,753 - -0.2
609,816 + -0.5

Or see this region's nucleotide sequence