Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4895

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4894 and Pf6N2E2_4895 are separated by 81 nucleotidesPf6N2E2_4895 and Pf6N2E2_4896 are separated by 98 nucleotides Pf6N2E2_4894 - large transcriptional regulator, at 5,645,441 to 5,648,740 _4894 Pf6N2E2_4895 - Isochorismatase (EC 3.3.2.1), at 5,648,822 to 5,649,376 _4895 Pf6N2E2_4896 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,649,475 to 5,650,470 _4896 Position (kb) 5648 5649 5650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5647.907 kb on + strand, within Pf6N2E2_4894at 5647.907 kb on + strand, within Pf6N2E2_4894at 5647.907 kb on + strand, within Pf6N2E2_4894at 5647.908 kb on - strand, within Pf6N2E2_4894at 5647.911 kb on - strand, within Pf6N2E2_4894at 5647.938 kb on - strand, within Pf6N2E2_4894at 5647.938 kb on - strand, within Pf6N2E2_4894at 5647.959 kb on + strand, within Pf6N2E2_4894at 5647.959 kb on + strand, within Pf6N2E2_4894at 5648.033 kb on + strand, within Pf6N2E2_4894at 5648.033 kb on + strand, within Pf6N2E2_4894at 5648.033 kb on + strand, within Pf6N2E2_4894at 5648.033 kb on + strand, within Pf6N2E2_4894at 5648.034 kb on - strand, within Pf6N2E2_4894at 5648.351 kb on + strand, within Pf6N2E2_4894at 5648.351 kb on + strand, within Pf6N2E2_4894at 5648.351 kb on + strand, within Pf6N2E2_4894at 5648.351 kb on + strand, within Pf6N2E2_4894at 5648.352 kb on - strand, within Pf6N2E2_4894at 5648.352 kb on - strand, within Pf6N2E2_4894at 5648.352 kb on - strand, within Pf6N2E2_4894at 5648.352 kb on - strand, within Pf6N2E2_4894at 5648.519 kb on - strandat 5648.530 kb on + strandat 5648.530 kb on + strandat 5648.752 kb on + strandat 5648.753 kb on - strandat 5648.753 kb on - strandat 5648.823 kb on + strandat 5648.824 kb on - strandat 5648.983 kb on - strand, within Pf6N2E2_4895at 5649.086 kb on + strand, within Pf6N2E2_4895at 5649.087 kb on - strand, within Pf6N2E2_4895at 5649.087 kb on - strand, within Pf6N2E2_4895at 5649.087 kb on - strand, within Pf6N2E2_4895at 5649.087 kb on - strand, within Pf6N2E2_4895at 5649.087 kb on - strand, within Pf6N2E2_4895at 5649.087 kb on - strand, within Pf6N2E2_4895at 5649.158 kb on - strand, within Pf6N2E2_4895at 5649.333 kb on + strandat 5649.333 kb on + strandat 5649.334 kb on - strandat 5649.334 kb on - strandat 5649.334 kb on - strandat 5649.334 kb on - strandat 5649.334 kb on - strandat 5649.354 kb on - strandat 5649.422 kb on + strandat 5649.455 kb on + strandat 5649.455 kb on + strandat 5649.455 kb on + strandat 5649.455 kb on + strandat 5649.456 kb on - strandat 5649.456 kb on - strandat 5649.456 kb on - strandat 5649.456 kb on - strandat 5649.517 kb on + strandat 5649.517 kb on + strandat 5649.517 kb on + strandat 5649.518 kb on - strandat 5650.001 kb on + strand, within Pf6N2E2_4896at 5650.099 kb on - strand, within Pf6N2E2_4896at 5650.224 kb on + strand, within Pf6N2E2_4896at 5650.224 kb on + strand, within Pf6N2E2_4896at 5650.225 kb on - strand, within Pf6N2E2_4896at 5650.225 kb on - strand, within Pf6N2E2_4896at 5650.225 kb on - strand, within Pf6N2E2_4896at 5650.225 kb on - strand, within Pf6N2E2_4896at 5650.273 kb on + strand, within Pf6N2E2_4896at 5650.274 kb on - strand, within Pf6N2E2_4896at 5650.274 kb on - strand, within Pf6N2E2_4896at 5650.274 kb on - strand, within Pf6N2E2_4896

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,647,907 + Pf6N2E2_4894 0.75 -0.2
5,647,907 + Pf6N2E2_4894 0.75 -1.7
5,647,907 + Pf6N2E2_4894 0.75 -0.4
5,647,908 - Pf6N2E2_4894 0.75 +0.3
5,647,911 - Pf6N2E2_4894 0.75 +1.0
5,647,938 - Pf6N2E2_4894 0.76 -1.6
5,647,938 - Pf6N2E2_4894 0.76 +1.7
5,647,959 + Pf6N2E2_4894 0.76 +0.4
5,647,959 + Pf6N2E2_4894 0.76 -0.4
5,648,033 + Pf6N2E2_4894 0.79 -0.6
5,648,033 + Pf6N2E2_4894 0.79 -0.2
5,648,033 + Pf6N2E2_4894 0.79 +0.0
5,648,033 + Pf6N2E2_4894 0.79 -0.3
5,648,034 - Pf6N2E2_4894 0.79 +0.8
5,648,351 + Pf6N2E2_4894 0.88 +0.1
5,648,351 + Pf6N2E2_4894 0.88 -0.2
5,648,351 + Pf6N2E2_4894 0.88 -3.4
5,648,351 + Pf6N2E2_4894 0.88 +1.0
5,648,352 - Pf6N2E2_4894 0.88 +0.0
5,648,352 - Pf6N2E2_4894 0.88 -0.4
5,648,352 - Pf6N2E2_4894 0.88 +1.0
5,648,352 - Pf6N2E2_4894 0.88 +0.2
5,648,519 - -0.6
5,648,530 + +0.7
5,648,530 + +0.7
5,648,752 + +0.6
5,648,753 - -0.3
5,648,753 - +1.7
5,648,823 + -0.7
5,648,824 - +0.1
5,648,983 - Pf6N2E2_4895 0.29 +0.2
5,649,086 + Pf6N2E2_4895 0.48 +0.6
5,649,087 - Pf6N2E2_4895 0.48 +1.0
5,649,087 - Pf6N2E2_4895 0.48 +1.4
5,649,087 - Pf6N2E2_4895 0.48 +0.2
5,649,087 - Pf6N2E2_4895 0.48 +0.6
5,649,087 - Pf6N2E2_4895 0.48 -0.0
5,649,087 - Pf6N2E2_4895 0.48 +0.7
5,649,158 - Pf6N2E2_4895 0.61 -0.0
5,649,333 + +0.6
5,649,333 + +0.1
5,649,334 - +0.4
5,649,334 - +1.4
5,649,334 - -1.3
5,649,334 - +0.2
5,649,334 - -0.1
5,649,354 - +0.7
5,649,422 + +0.1
5,649,455 + +0.8
5,649,455 + -0.2
5,649,455 + -0.4
5,649,455 + -0.3
5,649,456 - +0.7
5,649,456 - +0.1
5,649,456 - +1.8
5,649,456 - -0.1
5,649,517 + +0.4
5,649,517 + -0.2
5,649,517 + -0.3
5,649,518 - +1.0
5,650,001 + Pf6N2E2_4896 0.53 -1.2
5,650,099 - Pf6N2E2_4896 0.63 +0.2
5,650,224 + Pf6N2E2_4896 0.75 +0.3
5,650,224 + Pf6N2E2_4896 0.75 +0.6
5,650,225 - Pf6N2E2_4896 0.75 +0.2
5,650,225 - Pf6N2E2_4896 0.75 -0.9
5,650,225 - Pf6N2E2_4896 0.75 +0.1
5,650,225 - Pf6N2E2_4896 0.75 +0.6
5,650,273 + Pf6N2E2_4896 0.80 +0.8
5,650,274 - Pf6N2E2_4896 0.80 +1.4
5,650,274 - Pf6N2E2_4896 0.80 +1.1
5,650,274 - Pf6N2E2_4896 0.80 -0.4

Or see this region's nucleotide sequence