Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_474 and Pf6N2E2_475 are separated by 76 nucleotides Pf6N2E2_475 and Pf6N2E2_476 are separated by 110 nucleotides Pf6N2E2_476 and Pf6N2E2_477 are separated by 175 nucleotides
Pf6N2E2_474 - Transcriptional regulator, ArsR family, at 539,355 to 540,110
_474
Pf6N2E2_475 - Transcriptional regulator, AraC family, at 540,187 to 540,981
_475
Pf6N2E2_476 - Permease of the drug/metabolite transporter (DMT) superfamily, at 541,092 to 542,021
_476
Pf6N2E2_477 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 542,197 to 543,216
_477
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.198 kb on + strand at 540.198 kb on + strand at 540.710 kb on + strand, within Pf6N2E2_475 at 540.711 kb on - strand, within Pf6N2E2_475 at 540.711 kb on - strand, within Pf6N2E2_475 at 540.800 kb on + strand, within Pf6N2E2_475 at 540.801 kb on - strand, within Pf6N2E2_475 at 540.801 kb on - strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.839 kb on + strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.840 kb on - strand, within Pf6N2E2_475 at 540.845 kb on + strand, within Pf6N2E2_475 at 540.882 kb on - strand, within Pf6N2E2_475 at 540.981 kb on + strand at 541.028 kb on + strand at 541.028 kb on + strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.029 kb on - strand at 541.051 kb on - strand at 541.373 kb on + strand, within Pf6N2E2_476 at 541.373 kb on + strand, within Pf6N2E2_476 at 541.405 kb on - strand, within Pf6N2E2_476 at 541.615 kb on + strand, within Pf6N2E2_476 at 541.616 kb on - strand, within Pf6N2E2_476 at 541.919 kb on + strand, within Pf6N2E2_476 at 542.019 kb on + strand at 542.264 kb on + strand at 542.327 kb on + strand, within Pf6N2E2_477 at 542.327 kb on + strand, within Pf6N2E2_477 at 542.328 kb on - strand, within Pf6N2E2_477 at 542.328 kb on - strand, within Pf6N2E2_477 at 542.328 kb on - strand, within Pf6N2E2_477 at 542.652 kb on - strand, within Pf6N2E2_477 at 542.747 kb on + strand, within Pf6N2E2_477 at 542.843 kb on + strand, within Pf6N2E2_477
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 540,198 + +0.3 540,198 + -0.2 540,710 + Pf6N2E2_475 0.66 +0.1 540,711 - Pf6N2E2_475 0.66 +0.7 540,711 - Pf6N2E2_475 0.66 +0.4 540,800 + Pf6N2E2_475 0.77 +0.5 540,801 - Pf6N2E2_475 0.77 +0.5 540,801 - Pf6N2E2_475 0.77 -1.2 540,839 + Pf6N2E2_475 0.82 +0.8 540,839 + Pf6N2E2_475 0.82 +0.4 540,839 + Pf6N2E2_475 0.82 -0.1 540,840 - Pf6N2E2_475 0.82 -1.9 540,840 - Pf6N2E2_475 0.82 -0.2 540,840 - Pf6N2E2_475 0.82 -0.0 540,840 - Pf6N2E2_475 0.82 +0.0 540,840 - Pf6N2E2_475 0.82 -0.1 540,845 + Pf6N2E2_475 0.83 +0.3 540,882 - Pf6N2E2_475 0.87 +0.3 540,981 + +0.6 541,028 + +0.2 541,028 + +0.1 541,029 - -1.4 541,029 - -0.6 541,029 - +1.8 541,029 - +0.5 541,051 - -0.6 541,373 + Pf6N2E2_476 0.30 -0.0 541,373 + Pf6N2E2_476 0.30 -0.4 541,405 - Pf6N2E2_476 0.34 -0.2 541,615 + Pf6N2E2_476 0.56 -1.2 541,616 - Pf6N2E2_476 0.56 -0.9 541,919 + Pf6N2E2_476 0.89 -0.2 542,019 + -0.1 542,264 + -0.8 542,327 + Pf6N2E2_477 0.13 -0.4 542,327 + Pf6N2E2_477 0.13 -1.1 542,328 - Pf6N2E2_477 0.13 -0.2 542,328 - Pf6N2E2_477 0.13 -0.9 542,328 - Pf6N2E2_477 0.13 +0.4 542,652 - Pf6N2E2_477 0.45 -0.5 542,747 + Pf6N2E2_477 0.54 -0.3 542,843 + Pf6N2E2_477 0.63 -0.1
Or see this region's nucleotide sequence