Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4464

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4463 and Pf6N2E2_4464 overlap by 1 nucleotidesPf6N2E2_4464 and Pf6N2E2_4465 are separated by 291 nucleotidesPf6N2E2_4465 and Pf6N2E2_4466 overlap by 25 nucleotides Pf6N2E2_4463 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-), at 5,196,120 to 5,197,586 _4463 Pf6N2E2_4464 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 5,197,586 to 5,198,554 _4464 Pf6N2E2_4465 - ChaC-related protein, at 5,198,846 to 5,199,514 _4465 Pf6N2E2_4466 - Glycerol-3-phosphate transporter, at 5,199,490 to 5,200,839 _4466 Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5197.573 kb on + strandat 5197.579 kb on + strandat 5197.594 kb on - strandat 5197.594 kb on - strandat 5197.670 kb on + strandat 5197.671 kb on - strandat 5197.848 kb on + strand, within Pf6N2E2_4464at 5197.964 kb on + strand, within Pf6N2E2_4464at 5198.292 kb on - strand, within Pf6N2E2_4464at 5198.425 kb on - strand, within Pf6N2E2_4464at 5198.441 kb on + strand, within Pf6N2E2_4464at 5198.442 kb on - strand, within Pf6N2E2_4464at 5198.468 kb on + strandat 5198.468 kb on + strandat 5198.468 kb on + strandat 5198.469 kb on - strandat 5198.548 kb on + strandat 5198.552 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.671 kb on + strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.672 kb on - strandat 5198.673 kb on + strandat 5198.673 kb on + strandat 5198.673 kb on + strandat 5198.673 kb on + strandat 5198.674 kb on - strandat 5198.674 kb on - strandat 5198.674 kb on - strandat 5198.674 kb on - strandat 5198.685 kb on + strandat 5198.685 kb on + strandat 5198.686 kb on - strandat 5198.686 kb on - strandat 5198.686 kb on - strandat 5198.689 kb on + strandat 5198.696 kb on + strandat 5198.700 kb on + strandat 5198.723 kb on - strandat 5198.727 kb on + strandat 5198.727 kb on + strandat 5198.727 kb on + strandat 5198.727 kb on + strandat 5198.727 kb on + strandat 5198.727 kb on + strandat 5198.727 kb on + strandat 5198.728 kb on - strandat 5198.728 kb on - strandat 5198.728 kb on - strandat 5198.729 kb on + strandat 5198.729 kb on + strandat 5198.730 kb on - strandat 5198.759 kb on + strandat 5198.759 kb on + strandat 5198.760 kb on - strandat 5198.869 kb on + strandat 5198.869 kb on + strandat 5198.869 kb on + strandat 5198.870 kb on - strandat 5198.882 kb on + strandat 5198.882 kb on + strandat 5198.990 kb on + strand, within Pf6N2E2_4465at 5198.990 kb on + strand, within Pf6N2E2_4465at 5198.991 kb on - strand, within Pf6N2E2_4465at 5199.056 kb on + strand, within Pf6N2E2_4465at 5199.056 kb on + strand, within Pf6N2E2_4465at 5199.072 kb on - strand, within Pf6N2E2_4465at 5199.072 kb on - strand, within Pf6N2E2_4465at 5199.297 kb on + strand, within Pf6N2E2_4465at 5199.297 kb on + strand, within Pf6N2E2_4465at 5199.321 kb on - strand, within Pf6N2E2_4465at 5199.321 kb on - strand, within Pf6N2E2_4465at 5199.321 kb on - strand, within Pf6N2E2_4465at 5199.398 kb on + strand, within Pf6N2E2_4465at 5199.398 kb on + strand, within Pf6N2E2_4465at 5199.398 kb on + strand, within Pf6N2E2_4465at 5199.399 kb on - strand, within Pf6N2E2_4465at 5199.399 kb on - strand, within Pf6N2E2_4465at 5199.399 kb on - strand, within Pf6N2E2_4465at 5199.399 kb on - strandat 5199.399 kb on - strand, within Pf6N2E2_4465at 5199.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,197,573 + -0.4
5,197,579 + -0.4
5,197,594 - -3.4
5,197,594 - -0.5
5,197,670 + +1.1
5,197,671 - -2.3
5,197,848 + Pf6N2E2_4464 0.27 -1.3
5,197,964 + Pf6N2E2_4464 0.39 -1.1
5,198,292 - Pf6N2E2_4464 0.73 -1.1
5,198,425 - Pf6N2E2_4464 0.87 -1.6
5,198,441 + Pf6N2E2_4464 0.88 -0.4
5,198,442 - Pf6N2E2_4464 0.88 -2.1
5,198,468 + -2.5
5,198,468 + -3.6
5,198,468 + -3.1
5,198,469 - -2.7
5,198,548 + -0.5
5,198,552 + +0.8
5,198,671 + -0.3
5,198,671 + +0.9
5,198,671 + +0.5
5,198,671 + +0.6
5,198,671 + +0.4
5,198,671 + +0.2
5,198,671 + +0.5
5,198,671 + +1.3
5,198,671 + +0.5
5,198,671 + -0.1
5,198,671 + +0.1
5,198,671 + +1.0
5,198,671 + +1.1
5,198,671 + -0.5
5,198,672 - +0.4
5,198,672 - +0.1
5,198,672 - +0.2
5,198,672 - -1.2
5,198,672 - -0.0
5,198,672 - +0.7
5,198,672 - -2.0
5,198,672 - -2.1
5,198,672 - -0.4
5,198,672 - +1.0
5,198,672 - -0.3
5,198,672 - -0.9
5,198,672 - +1.1
5,198,672 - -0.2
5,198,673 + +0.2
5,198,673 + +0.4
5,198,673 + -0.2
5,198,673 + +0.8
5,198,674 - +0.5
5,198,674 - -0.3
5,198,674 - -0.5
5,198,674 - -0.5
5,198,685 + +0.3
5,198,685 + -0.7
5,198,686 - -0.5
5,198,686 - +0.7
5,198,686 - -0.1
5,198,689 + +2.2
5,198,696 + +1.1
5,198,700 + +0.7
5,198,723 - +0.0
5,198,727 + +0.4
5,198,727 + -0.1
5,198,727 + +0.9
5,198,727 + -0.6
5,198,727 + +0.3
5,198,727 + -0.3
5,198,727 + +0.5
5,198,728 - -0.5
5,198,728 - -0.3
5,198,728 - -0.1
5,198,729 + +0.6
5,198,729 + +1.2
5,198,730 - -0.2
5,198,759 + +0.1
5,198,759 + -0.9
5,198,760 - -1.2
5,198,869 + +0.5
5,198,869 + +0.2
5,198,869 + +0.7
5,198,870 - -0.6
5,198,882 + +1.4
5,198,882 + +0.0
5,198,990 + Pf6N2E2_4465 0.22 +0.1
5,198,990 + Pf6N2E2_4465 0.22 -0.2
5,198,991 - Pf6N2E2_4465 0.22 -0.2
5,199,056 + Pf6N2E2_4465 0.31 +0.1
5,199,056 + Pf6N2E2_4465 0.31 +0.5
5,199,072 - Pf6N2E2_4465 0.34 +0.1
5,199,072 - Pf6N2E2_4465 0.34 +0.5
5,199,297 + Pf6N2E2_4465 0.67 +0.9
5,199,297 + Pf6N2E2_4465 0.67 +0.2
5,199,321 - Pf6N2E2_4465 0.71 +0.4
5,199,321 - Pf6N2E2_4465 0.71 +0.9
5,199,321 - Pf6N2E2_4465 0.71 -0.8
5,199,398 + Pf6N2E2_4465 0.83 +1.5
5,199,398 + Pf6N2E2_4465 0.83 -0.4
5,199,398 + Pf6N2E2_4465 0.83 +0.2
5,199,399 - Pf6N2E2_4465 0.83 -0.7
5,199,399 - Pf6N2E2_4465 0.83 +1.3
5,199,399 - Pf6N2E2_4465 0.83 +0.1
5,199,399 - +1.2
5,199,399 - Pf6N2E2_4465 0.83 +0.4
5,199,476 - -0.1

Or see this region's nucleotide sequence