Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4334 and Pf6N2E2_4335 overlap by 4 nucleotides Pf6N2E2_4335 and Pf6N2E2_4336 are separated by 81 nucleotides Pf6N2E2_4336 and Pf6N2E2_4337 are separated by 415 nucleotides
Pf6N2E2_4334 - Uncharacterized protein ImpC, at 5,056,173 to 5,057,675
_4334
Pf6N2E2_4335 - Uncharacterized protein ImpB, at 5,057,672 to 5,058,178
_4335
Pf6N2E2_4336 - Uncharacterized protein ImpA, at 5,058,260 to 5,059,303
_4336
Pf6N2E2_4337 - Uncharacterized protein ImpI/VasC, at 5,059,719 to 5,061,218
_4337
Position (kb) 5058
5059
5060 Strain fitness (log2 ratio) -1
0
1
2 at 5057.362 kb on + strand, within Pf6N2E2_4334 at 5057.363 kb on - strand, within Pf6N2E2_4334 at 5057.657 kb on + strand at 5057.657 kb on + strand at 5057.657 kb on + strand at 5057.658 kb on - strand at 5057.658 kb on - strand at 5057.658 kb on - strand at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5058.056 kb on + strand, within Pf6N2E2_4335 at 5058.099 kb on + strand, within Pf6N2E2_4335 at 5058.261 kb on + strand at 5058.262 kb on - strand at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.411 kb on + strand, within Pf6N2E2_4336 at 5058.412 kb on - strand, within Pf6N2E2_4336 at 5058.412 kb on - strand, within Pf6N2E2_4336 at 5058.412 kb on - strand, within Pf6N2E2_4336 at 5058.487 kb on + strand, within Pf6N2E2_4336 at 5058.487 kb on + strand, within Pf6N2E2_4336 at 5058.996 kb on + strand, within Pf6N2E2_4336 at 5058.996 kb on + strand, within Pf6N2E2_4336 at 5058.996 kb on + strand, within Pf6N2E2_4336 at 5058.997 kb on - strand, within Pf6N2E2_4336 at 5058.997 kb on - strand, within Pf6N2E2_4336 at 5059.239 kb on + strand at 5059.240 kb on - strand at 5059.399 kb on + strand at 5059.400 kb on - strand at 5059.434 kb on - strand at 5059.460 kb on + strand at 5059.463 kb on + strand at 5059.464 kb on - strand at 5059.464 kb on - strand at 5059.464 kb on - strand at 5059.464 kb on - strand at 5059.464 kb on - strand at 5059.464 kb on - strand at 5059.468 kb on - strand at 5059.482 kb on + strand at 5059.483 kb on - strand at 5059.483 kb on - strand at 5059.483 kb on - strand at 5059.487 kb on + strand at 5059.487 kb on + strand at 5059.488 kb on - strand at 5059.488 kb on - strand at 5059.488 kb on - strand at 5059.501 kb on - strand at 5059.511 kb on + strand at 5059.511 kb on + strand at 5059.512 kb on - strand at 5059.596 kb on - strand at 5059.596 kb on - strand at 5059.700 kb on + strand at 5059.701 kb on - strand at 5059.736 kb on + strand at 5059.736 kb on + strand at 5059.736 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.742 kb on + strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.743 kb on - strand at 5059.746 kb on + strand at 5059.746 kb on + strand at 5059.747 kb on - strand at 5059.747 kb on - strand at 5059.747 kb on - strand at 5059.747 kb on - strand at 5059.834 kb on + strand at 5059.884 kb on + strand, within Pf6N2E2_4337 at 5059.884 kb on + strand, within Pf6N2E2_4337 at 5059.884 kb on + strand, within Pf6N2E2_4337 at 5059.885 kb on - strand, within Pf6N2E2_4337 at 5059.900 kb on - strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.902 kb on + strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.903 kb on - strand, within Pf6N2E2_4337 at 5059.907 kb on - strand, within Pf6N2E2_4337 at 5059.914 kb on - strand, within Pf6N2E2_4337 at 5059.922 kb on + strand, within Pf6N2E2_4337 at 5060.013 kb on + strand, within Pf6N2E2_4337 at 5060.013 kb on + strand, within Pf6N2E2_4337 at 5060.013 kb on + strand, within Pf6N2E2_4337 at 5060.014 kb on - strand, within Pf6N2E2_4337 at 5060.144 kb on + strand, within Pf6N2E2_4337 at 5060.144 kb on + strand, within Pf6N2E2_4337 at 5060.144 kb on + strand, within Pf6N2E2_4337 at 5060.144 kb on + strand, within Pf6N2E2_4337 at 5060.145 kb on - strand, within Pf6N2E2_4337
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,057,362 + Pf6N2E2_4334 0.79 -1.0 5,057,363 - Pf6N2E2_4334 0.79 +1.2 5,057,657 + +1.0 5,057,657 + -0.1 5,057,657 + +0.2 5,057,658 - +1.5 5,057,658 - +0.6 5,057,658 - -0.7 5,057,778 + Pf6N2E2_4335 0.21 +0.5 5,057,778 + Pf6N2E2_4335 0.21 -0.9 5,057,778 + Pf6N2E2_4335 0.21 +0.3 5,057,778 + Pf6N2E2_4335 0.21 +1.2 5,057,778 + Pf6N2E2_4335 0.21 -0.2 5,057,778 + Pf6N2E2_4335 0.21 +0.3 5,057,778 + Pf6N2E2_4335 0.21 +0.6 5,057,778 + Pf6N2E2_4335 0.21 +1.1 5,057,778 + Pf6N2E2_4335 0.21 -0.1 5,057,779 - Pf6N2E2_4335 0.21 +0.2 5,057,779 - Pf6N2E2_4335 0.21 +0.8 5,057,779 - Pf6N2E2_4335 0.21 +1.2 5,057,779 - Pf6N2E2_4335 0.21 +0.3 5,057,779 - Pf6N2E2_4335 0.21 +1.1 5,058,056 + Pf6N2E2_4335 0.76 +0.3 5,058,099 + Pf6N2E2_4335 0.84 +1.8 5,058,261 + +0.4 5,058,262 - +1.8 5,058,408 + Pf6N2E2_4336 0.14 +1.1 5,058,408 + Pf6N2E2_4336 0.14 +1.7 5,058,408 + Pf6N2E2_4336 0.14 +0.9 5,058,408 + Pf6N2E2_4336 0.14 +0.6 5,058,409 - Pf6N2E2_4336 0.14 +0.0 5,058,409 - Pf6N2E2_4336 0.14 -0.8 5,058,409 - Pf6N2E2_4336 0.14 +0.5 5,058,409 - Pf6N2E2_4336 0.14 -0.5 5,058,409 - Pf6N2E2_4336 0.14 +0.2 5,058,411 + Pf6N2E2_4336 0.14 +0.9 5,058,412 - Pf6N2E2_4336 0.15 -0.7 5,058,412 - Pf6N2E2_4336 0.15 +0.7 5,058,412 - Pf6N2E2_4336 0.15 +0.8 5,058,487 + Pf6N2E2_4336 0.22 +0.7 5,058,487 + Pf6N2E2_4336 0.22 +0.3 5,058,996 + Pf6N2E2_4336 0.70 +1.6 5,058,996 + Pf6N2E2_4336 0.70 +0.9 5,058,996 + Pf6N2E2_4336 0.70 +0.0 5,058,997 - Pf6N2E2_4336 0.71 +0.5 5,058,997 - Pf6N2E2_4336 0.71 +0.8 5,059,239 + +0.2 5,059,240 - +0.9 5,059,399 + -1.6 5,059,400 - -0.7 5,059,434 - +0.4 5,059,460 + +0.9 5,059,463 + -1.0 5,059,464 - +0.2 5,059,464 - +1.5 5,059,464 - +0.9 5,059,464 - +0.2 5,059,464 - +0.6 5,059,464 - +1.0 5,059,468 - +0.1 5,059,482 + +0.8 5,059,483 - +0.8 5,059,483 - +1.5 5,059,483 - -0.1 5,059,487 + -0.5 5,059,487 + +0.3 5,059,488 - +0.6 5,059,488 - +0.3 5,059,488 - +0.8 5,059,501 - +0.6 5,059,511 + +1.4 5,059,511 + +0.4 5,059,512 - +1.0 5,059,596 - +0.2 5,059,596 - +0.9 5,059,700 + +1.6 5,059,701 - -0.4 5,059,736 + +1.8 5,059,736 + -0.2 5,059,736 + +1.5 5,059,742 + +0.3 5,059,742 + +1.2 5,059,742 + -0.1 5,059,742 + -1.2 5,059,742 + +0.1 5,059,742 + +1.1 5,059,742 + +0.5 5,059,742 + +0.2 5,059,742 + +1.1 5,059,742 + +0.6 5,059,742 + +0.9 5,059,743 - -0.8 5,059,743 - -0.1 5,059,743 - -0.3 5,059,743 - +0.3 5,059,743 - -0.2 5,059,743 - -0.0 5,059,743 - +0.6 5,059,743 - +1.1 5,059,743 - +1.4 5,059,746 + +1.2 5,059,746 + +0.6 5,059,747 - -0.6 5,059,747 - -0.5 5,059,747 - +0.3 5,059,747 - -0.5 5,059,834 + +0.1 5,059,884 + Pf6N2E2_4337 0.11 +1.2 5,059,884 + Pf6N2E2_4337 0.11 +0.3 5,059,884 + Pf6N2E2_4337 0.11 +1.0 5,059,885 - Pf6N2E2_4337 0.11 +0.3 5,059,900 - Pf6N2E2_4337 0.12 -0.1 5,059,902 + Pf6N2E2_4337 0.12 +0.2 5,059,902 + Pf6N2E2_4337 0.12 -0.4 5,059,902 + Pf6N2E2_4337 0.12 -0.0 5,059,902 + Pf6N2E2_4337 0.12 +0.2 5,059,902 + Pf6N2E2_4337 0.12 +0.7 5,059,902 + Pf6N2E2_4337 0.12 +0.1 5,059,902 + Pf6N2E2_4337 0.12 +1.3 5,059,902 + Pf6N2E2_4337 0.12 +0.9 5,059,902 + Pf6N2E2_4337 0.12 +0.4 5,059,903 - Pf6N2E2_4337 0.12 +0.2 5,059,903 - Pf6N2E2_4337 0.12 -0.4 5,059,903 - Pf6N2E2_4337 0.12 -0.2 5,059,903 - Pf6N2E2_4337 0.12 -0.0 5,059,903 - Pf6N2E2_4337 0.12 +0.9 5,059,903 - Pf6N2E2_4337 0.12 +0.6 5,059,903 - Pf6N2E2_4337 0.12 -0.1 5,059,903 - Pf6N2E2_4337 0.12 +0.9 5,059,903 - Pf6N2E2_4337 0.12 +1.6 5,059,903 - Pf6N2E2_4337 0.12 +0.5 5,059,907 - Pf6N2E2_4337 0.13 +0.4 5,059,914 - Pf6N2E2_4337 0.13 -0.1 5,059,922 + Pf6N2E2_4337 0.14 +0.6 5,060,013 + Pf6N2E2_4337 0.20 +1.1 5,060,013 + Pf6N2E2_4337 0.20 +1.4 5,060,013 + Pf6N2E2_4337 0.20 -0.8 5,060,014 - Pf6N2E2_4337 0.20 +0.7 5,060,144 + Pf6N2E2_4337 0.28 -0.1 5,060,144 + Pf6N2E2_4337 0.28 -1.3 5,060,144 + Pf6N2E2_4337 0.28 -0.1 5,060,144 + Pf6N2E2_4337 0.28 +0.2 5,060,145 - Pf6N2E2_4337 0.28 +0.5
Or see this region's nucleotide sequence