Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2 and Pf6N2E2_3 are separated by 273 nucleotides Pf6N2E2_3 and Pf6N2E2_4 overlap by 1 nucleotides
Pf6N2E2_2 - FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis, at 1,006 to 1,740
_2
Pf6N2E2_3 - Non-ribosomal peptide synthetase modules, pyoverdine, at 2,014 to 14,454
_3
Pf6N2E2_4 - Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 14,454 to 20,954
_4
Position (kb) 2
3
4
5
6
7
8
9
10
11
12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1.037 kb on - strand at 1.060 kb on + strand at 1.060 kb on + strand at 1.060 kb on + strand at 1.061 kb on - strand at 1.349 kb on - strand, within Pf6N2E2_2 at 1.430 kb on + strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.960 kb on - strand at 2.173 kb on + strand at 2.227 kb on + strand at 2.228 kb on - strand at 2.919 kb on + strand at 2.919 kb on + strand at 2.945 kb on - strand at 3.184 kb on + strand at 3.184 kb on + strand at 3.185 kb on - strand at 3.208 kb on + strand at 3.208 kb on + strand at 3.208 kb on + strand at 3.208 kb on + strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.326 kb on - strand, within Pf6N2E2_3 at 3.326 kb on - strand, within Pf6N2E2_3 at 3.361 kb on + strand, within Pf6N2E2_3 at 3.362 kb on - strand, within Pf6N2E2_3 at 3.362 kb on - strand, within Pf6N2E2_3 at 3.362 kb on - strand, within Pf6N2E2_3 at 3.552 kb on - strand, within Pf6N2E2_3 at 3.628 kb on + strand, within Pf6N2E2_3 at 3.628 kb on + strand, within Pf6N2E2_3 at 3.775 kb on + strand, within Pf6N2E2_3 at 3.776 kb on - strand, within Pf6N2E2_3 at 3.985 kb on + strand, within Pf6N2E2_3 at 3.985 kb on + strand, within Pf6N2E2_3 at 4.078 kb on + strand, within Pf6N2E2_3 at 4.079 kb on - strand, within Pf6N2E2_3 at 4.079 kb on - strand, within Pf6N2E2_3 at 4.321 kb on + strand, within Pf6N2E2_3 at 4.426 kb on + strand, within Pf6N2E2_3 at 4.427 kb on - strand, within Pf6N2E2_3 at 4.427 kb on - strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.542 kb on + strand, within Pf6N2E2_3 at 4.542 kb on + strand, within Pf6N2E2_3 at 4.546 kb on + strand, within Pf6N2E2_3 at 4.546 kb on + strand, within Pf6N2E2_3 at 4.546 kb on + strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.631 kb on - strand, within Pf6N2E2_3 at 4.702 kb on + strand, within Pf6N2E2_3 at 4.775 kb on + strand, within Pf6N2E2_3 at 4.775 kb on + strand, within Pf6N2E2_3 at 4.776 kb on - strand, within Pf6N2E2_3 at 4.776 kb on - strand, within Pf6N2E2_3 at 4.776 kb on - strand, within Pf6N2E2_3 at 4.999 kb on + strand, within Pf6N2E2_3 at 5.000 kb on - strand, within Pf6N2E2_3 at 5.166 kb on - strand, within Pf6N2E2_3 at 5.306 kb on + strand, within Pf6N2E2_3 at 5.306 kb on + strand, within Pf6N2E2_3 at 5.744 kb on + strand, within Pf6N2E2_3 at 5.745 kb on - strand, within Pf6N2E2_3 at 5.870 kb on - strand, within Pf6N2E2_3 at 6.333 kb on - strand, within Pf6N2E2_3 at 6.418 kb on + strand, within Pf6N2E2_3 at 6.550 kb on + strand, within Pf6N2E2_3 at 6.550 kb on + strand, within Pf6N2E2_3 at 6.551 kb on - strand, within Pf6N2E2_3 at 6.551 kb on - strand, within Pf6N2E2_3 at 6.631 kb on + strand, within Pf6N2E2_3 at 6.632 kb on - strand, within Pf6N2E2_3 at 6.632 kb on - strand, within Pf6N2E2_3 at 6.775 kb on + strand, within Pf6N2E2_3 at 6.820 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.854 kb on + strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 7.006 kb on + strand, within Pf6N2E2_3 at 7.006 kb on + strand, within Pf6N2E2_3 at 7.423 kb on + strand, within Pf6N2E2_3 at 7.423 kb on + strand, within Pf6N2E2_3 at 7.424 kb on - strand, within Pf6N2E2_3 at 7.424 kb on - strand, within Pf6N2E2_3 at 8.348 kb on - strand, within Pf6N2E2_3 at 8.348 kb on - strand, within Pf6N2E2_3 at 8.348 kb on - strand, within Pf6N2E2_3 at 8.389 kb on + strand, within Pf6N2E2_3 at 8.390 kb on - strand, within Pf6N2E2_3 at 8.554 kb on + strand, within Pf6N2E2_3 at 8.554 kb on + strand, within Pf6N2E2_3 at 8.554 kb on + strand, within Pf6N2E2_3 at 8.555 kb on - strand, within Pf6N2E2_3 at 8.563 kb on + strand, within Pf6N2E2_3 at 8.564 kb on - strand, within Pf6N2E2_3 at 8.791 kb on + strand, within Pf6N2E2_3 at 8.791 kb on + strand, within Pf6N2E2_3 at 8.792 kb on - strand, within Pf6N2E2_3 at 8.902 kb on + strand, within Pf6N2E2_3 at 8.902 kb on + strand, within Pf6N2E2_3 at 8.903 kb on - strand, within Pf6N2E2_3 at 8.903 kb on - strand, within Pf6N2E2_3 at 8.903 kb on - strand, within Pf6N2E2_3 at 9.059 kb on - strand, within Pf6N2E2_3 at 9.152 kb on - strand, within Pf6N2E2_3 at 9.152 kb on - strand, within Pf6N2E2_3 at 9.547 kb on + strand, within Pf6N2E2_3 at 9.547 kb on + strand, within Pf6N2E2_3 at 9.644 kb on - strand, within Pf6N2E2_3 at 9.644 kb on - strand, within Pf6N2E2_3 at 10.081 kb on - strand, within Pf6N2E2_3 at 10.439 kb on - strand, within Pf6N2E2_3 at 10.579 kb on - strand, within Pf6N2E2_3 at 10.957 kb on + strand, within Pf6N2E2_3 at 10.958 kb on - strand, within Pf6N2E2_3 at 11.170 kb on + strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.174 kb on + strand, within Pf6N2E2_3 at 11.174 kb on + strand, within Pf6N2E2_3 at 11.174 kb on + strand, within Pf6N2E2_3 at 11.175 kb on - strand, within Pf6N2E2_3 at 11.175 kb on - strand, within Pf6N2E2_3 at 11.314 kb on + strand, within Pf6N2E2_3 at 11.314 kb on + strand, within Pf6N2E2_3 at 11.353 kb on - strand, within Pf6N2E2_3 at 11.380 kb on + strand, within Pf6N2E2_3 at 11.380 kb on + strand, within Pf6N2E2_3 at 11.577 kb on + strand, within Pf6N2E2_3 at 11.767 kb on + strand, within Pf6N2E2_3 at 12.065 kb on - strand, within Pf6N2E2_3 at 12.472 kb on + strand, within Pf6N2E2_3 at 12.777 kb on + strand, within Pf6N2E2_3 at 12.778 kb on - strand, within Pf6N2E2_3 at 12.928 kb on + strand, within Pf6N2E2_3 at 12.928 kb on + strand, within Pf6N2E2_3 at 12.929 kb on - strand, within Pf6N2E2_3 at 13.093 kb on + strand, within Pf6N2E2_3 at 13.102 kb on + strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.190 kb on - strand, within Pf6N2E2_3 at 13.469 kb on - strand at 13.492 kb on + strand at 13.492 kb on + strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.526 kb on - strand at 13.526 kb on - strand at 13.526 kb on - strand at 13.597 kb on + strand at 13.597 kb on + strand at 13.597 kb on + strand at 13.598 kb on - strand at 13.651 kb on + strand at 13.652 kb on - strand at 13.753 kb on + strand at 14.036 kb on + strand at 14.045 kb on - strand at 14.459 kb on + strand at 14.460 kb on - strand at 14.493 kb on - strand at 14.613 kb on + strand at 14.613 kb on + strand at 14.613 kb on + strand at 15.055 kb on - strand at 15.057 kb on + strand at 15.058 kb on - strand at 15.111 kb on + strand, within Pf6N2E2_4
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,037 - +0.8 1,060 + -0.0 1,060 + -0.3 1,060 + -0.3 1,061 - +0.7 1,349 - Pf6N2E2_2 0.47 +0.3 1,430 + Pf6N2E2_2 0.58 -0.2 1,431 - Pf6N2E2_2 0.58 -0.1 1,431 - Pf6N2E2_2 0.58 -0.5 1,431 - Pf6N2E2_2 0.58 +0.8 1,960 - -0.2 2,173 + -0.2 2,227 + +0.2 2,228 - +1.1 2,919 + +0.7 2,919 + +0.1 2,945 - -0.4 3,184 + +1.0 3,184 + +0.1 3,185 - -0.6 3,208 + +0.2 3,208 + +0.3 3,208 + -0.7 3,208 + -0.2 3,209 - +0.3 3,209 - -0.3 3,209 - -0.1 3,209 - -1.2 3,209 - -0.9 3,326 - Pf6N2E2_3 0.11 -1.2 3,326 - Pf6N2E2_3 0.11 +0.4 3,361 + Pf6N2E2_3 0.11 +0.4 3,362 - Pf6N2E2_3 0.11 +2.0 3,362 - Pf6N2E2_3 0.11 -0.6 3,362 - Pf6N2E2_3 0.11 +0.3 3,552 - Pf6N2E2_3 0.12 +0.6 3,628 + Pf6N2E2_3 0.13 +1.1 3,628 + Pf6N2E2_3 0.13 -0.4 3,775 + Pf6N2E2_3 0.14 +0.3 3,776 - Pf6N2E2_3 0.14 +0.4 3,985 + Pf6N2E2_3 0.16 -0.0 3,985 + Pf6N2E2_3 0.16 -0.7 4,078 + Pf6N2E2_3 0.17 +0.3 4,079 - Pf6N2E2_3 0.17 -1.5 4,079 - Pf6N2E2_3 0.17 -0.7 4,321 + Pf6N2E2_3 0.19 -0.6 4,426 + Pf6N2E2_3 0.19 -0.8 4,427 - Pf6N2E2_3 0.19 -1.6 4,427 - Pf6N2E2_3 0.19 -0.4 4,477 + Pf6N2E2_3 0.20 -0.6 4,477 + Pf6N2E2_3 0.20 +0.8 4,477 + Pf6N2E2_3 0.20 +0.6 4,477 + Pf6N2E2_3 0.20 +0.1 4,542 + Pf6N2E2_3 0.20 +0.7 4,542 + Pf6N2E2_3 0.20 +0.1 4,546 + Pf6N2E2_3 0.20 -1.0 4,546 + Pf6N2E2_3 0.20 +0.2 4,546 + Pf6N2E2_3 0.20 -0.3 4,547 - Pf6N2E2_3 0.20 +0.4 4,547 - Pf6N2E2_3 0.20 -1.2 4,547 - Pf6N2E2_3 0.20 +0.5 4,547 - Pf6N2E2_3 0.20 -0.3 4,547 - Pf6N2E2_3 0.20 -1.8 4,547 - Pf6N2E2_3 0.20 -0.0 4,547 - Pf6N2E2_3 0.20 +1.2 4,547 - Pf6N2E2_3 0.20 +0.0 4,547 - Pf6N2E2_3 0.20 +0.2 4,547 - Pf6N2E2_3 0.20 -0.7 4,631 - Pf6N2E2_3 0.21 -0.9 4,702 + Pf6N2E2_3 0.22 -0.9 4,775 + Pf6N2E2_3 0.22 -0.9 4,775 + Pf6N2E2_3 0.22 -0.5 4,776 - Pf6N2E2_3 0.22 -0.8 4,776 - Pf6N2E2_3 0.22 -0.5 4,776 - Pf6N2E2_3 0.22 -1.4 4,999 + Pf6N2E2_3 0.24 -1.0 5,000 - Pf6N2E2_3 0.24 +0.6 5,166 - Pf6N2E2_3 0.25 -0.6 5,306 + Pf6N2E2_3 0.26 -0.4 5,306 + Pf6N2E2_3 0.26 -0.1 5,744 + Pf6N2E2_3 0.30 -1.0 5,745 - Pf6N2E2_3 0.30 -1.7 5,870 - Pf6N2E2_3 0.31 +0.4 6,333 - Pf6N2E2_3 0.35 -1.6 6,418 + Pf6N2E2_3 0.35 -0.1 6,550 + Pf6N2E2_3 0.36 +0.5 6,550 + Pf6N2E2_3 0.36 -0.6 6,551 - Pf6N2E2_3 0.36 +1.7 6,551 - Pf6N2E2_3 0.36 -1.7 6,631 + Pf6N2E2_3 0.37 +0.4 6,632 - Pf6N2E2_3 0.37 -0.4 6,632 - Pf6N2E2_3 0.37 +0.5 6,775 + Pf6N2E2_3 0.38 +0.5 6,820 + Pf6N2E2_3 0.39 +0.7 6,841 + Pf6N2E2_3 0.39 +1.2 6,841 + Pf6N2E2_3 0.39 -0.1 6,841 + Pf6N2E2_3 0.39 -0.2 6,841 + Pf6N2E2_3 0.39 -0.6 6,842 - Pf6N2E2_3 0.39 +0.3 6,842 - Pf6N2E2_3 0.39 -1.3 6,842 - Pf6N2E2_3 0.39 +0.4 6,842 - Pf6N2E2_3 0.39 -0.6 6,842 - Pf6N2E2_3 0.39 -0.8 6,854 + Pf6N2E2_3 0.39 +0.5 6,855 - Pf6N2E2_3 0.39 +0.3 6,855 - Pf6N2E2_3 0.39 -0.6 6,855 - Pf6N2E2_3 0.39 -0.3 6,855 - Pf6N2E2_3 0.39 -0.5 7,006 + Pf6N2E2_3 0.40 -0.1 7,006 + Pf6N2E2_3 0.40 -0.1 7,423 + Pf6N2E2_3 0.43 -0.3 7,423 + Pf6N2E2_3 0.43 +0.2 7,424 - Pf6N2E2_3 0.43 -0.4 7,424 - Pf6N2E2_3 0.43 +0.2 8,348 - Pf6N2E2_3 0.51 -0.2 8,348 - Pf6N2E2_3 0.51 -0.3 8,348 - Pf6N2E2_3 0.51 -0.4 8,389 + Pf6N2E2_3 0.51 +0.2 8,390 - Pf6N2E2_3 0.51 -0.8 8,554 + Pf6N2E2_3 0.53 +0.0 8,554 + Pf6N2E2_3 0.53 +0.7 8,554 + Pf6N2E2_3 0.53 +0.3 8,555 - Pf6N2E2_3 0.53 -0.3 8,563 + Pf6N2E2_3 0.53 +1.0 8,564 - Pf6N2E2_3 0.53 +0.1 8,791 + Pf6N2E2_3 0.54 -0.4 8,791 + Pf6N2E2_3 0.54 -0.0 8,792 - Pf6N2E2_3 0.54 +0.7 8,902 + Pf6N2E2_3 0.55 -0.5 8,902 + Pf6N2E2_3 0.55 +0.1 8,903 - Pf6N2E2_3 0.55 +0.8 8,903 - Pf6N2E2_3 0.55 -0.6 8,903 - Pf6N2E2_3 0.55 +2.1 9,059 - Pf6N2E2_3 0.57 +0.2 9,152 - Pf6N2E2_3 0.57 +0.2 9,152 - Pf6N2E2_3 0.57 -0.9 9,547 + Pf6N2E2_3 0.61 +0.8 9,547 + Pf6N2E2_3 0.61 -0.5 9,644 - Pf6N2E2_3 0.61 +0.7 9,644 - Pf6N2E2_3 0.61 -0.2 10,081 - Pf6N2E2_3 0.65 +0.5 10,439 - Pf6N2E2_3 0.68 -0.4 10,579 - Pf6N2E2_3 0.69 +1.2 10,957 + Pf6N2E2_3 0.72 +0.3 10,958 - Pf6N2E2_3 0.72 -0.7 11,170 + Pf6N2E2_3 0.74 -0.2 11,171 - Pf6N2E2_3 0.74 +0.4 11,171 - Pf6N2E2_3 0.74 +0.1 11,171 - Pf6N2E2_3 0.74 -0.0 11,171 - Pf6N2E2_3 0.74 -0.1 11,171 - Pf6N2E2_3 0.74 +0.1 11,171 - Pf6N2E2_3 0.74 -0.6 11,171 - Pf6N2E2_3 0.74 +0.9 11,171 - Pf6N2E2_3 0.74 -0.9 11,174 + Pf6N2E2_3 0.74 -1.1 11,174 + Pf6N2E2_3 0.74 +0.6 11,174 + Pf6N2E2_3 0.74 -1.3 11,175 - Pf6N2E2_3 0.74 +0.4 11,175 - Pf6N2E2_3 0.74 +0.5 11,314 + Pf6N2E2_3 0.75 -0.2 11,314 + Pf6N2E2_3 0.75 +0.2 11,353 - Pf6N2E2_3 0.75 -0.5 11,380 + Pf6N2E2_3 0.75 -1.0 11,380 + Pf6N2E2_3 0.75 +0.1 11,577 + Pf6N2E2_3 0.77 +1.9 11,767 + Pf6N2E2_3 0.78 +0.8 12,065 - Pf6N2E2_3 0.81 +0.5 12,472 + Pf6N2E2_3 0.84 +0.1 12,777 + Pf6N2E2_3 0.87 -1.5 12,778 - Pf6N2E2_3 0.87 +0.4 12,928 + Pf6N2E2_3 0.88 -0.5 12,928 + Pf6N2E2_3 0.88 -0.8 12,929 - Pf6N2E2_3 0.88 +0.3 13,093 + Pf6N2E2_3 0.89 -0.9 13,102 + Pf6N2E2_3 0.89 -1.9 13,103 - Pf6N2E2_3 0.89 +0.1 13,103 - Pf6N2E2_3 0.89 -1.9 13,103 - Pf6N2E2_3 0.89 -0.5 13,103 - Pf6N2E2_3 0.89 -0.5 13,190 - Pf6N2E2_3 0.90 +0.1 13,469 - -1.2 13,492 + -0.0 13,492 + -1.5 13,525 + +0.5 13,525 + -0.5 13,525 + +0.9 13,526 - -1.6 13,526 - +0.2 13,526 - +0.4 13,597 + +0.2 13,597 + -0.6 13,597 + -0.1 13,598 - -2.7 13,651 + -0.6 13,652 - -0.2 13,753 + +0.8 14,036 + -0.9 14,045 - -0.9 14,459 + +0.4 14,460 - +0.9 14,493 - +1.7 14,613 + +1.1 14,613 + -2.8 14,613 + -1.0 15,055 - -0.6 15,057 + +1.0 15,058 - -0.9 15,111 + Pf6N2E2_4 0.10 +1.7
Or see this region's nucleotide sequence