Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2895 and Pf6N2E2_2896 overlap by 11 nucleotides Pf6N2E2_2896 and Pf6N2E2_2897 are separated by 184 nucleotides Pf6N2E2_2897 and Pf6N2E2_2898 overlap by 4 nucleotides
Pf6N2E2_2895 - Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster, at 3,383,555 to 3,385,024
_2895
Pf6N2E2_2896 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 3,385,014 to 3,385,745
_2896
Pf6N2E2_2897 - Glucokinase (EC 2.7.1.2), at 3,385,930 to 3,386,889
_2897
Pf6N2E2_2898 - Phosphogluconate dehydratase (EC 4.2.1.12), at 3,386,886 to 3,388,712
_2898
Position (kb)
3385
3386
3387 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3385.432 kb on + strand, within Pf6N2E2_2896 at 3385.432 kb on + strand, within Pf6N2E2_2896 at 3385.432 kb on + strand, within Pf6N2E2_2896 at 3385.432 kb on + strand, within Pf6N2E2_2896 at 3385.433 kb on - strand, within Pf6N2E2_2896 at 3385.545 kb on + strand, within Pf6N2E2_2896 at 3385.545 kb on + strand, within Pf6N2E2_2896 at 3385.675 kb on + strand at 3385.675 kb on + strand at 3385.675 kb on + strand at 3385.675 kb on + strand at 3385.675 kb on + strand at 3385.675 kb on + strand at 3385.675 kb on + strand at 3385.676 kb on - strand at 3385.676 kb on - strand at 3385.779 kb on + strand at 3385.780 kb on - strand at 3385.799 kb on + strand at 3385.800 kb on - strand at 3385.800 kb on - strand at 3385.810 kb on + strand at 3385.811 kb on - strand at 3385.913 kb on - strand at 3385.913 kb on - strand at 3385.913 kb on - strand at 3385.922 kb on - strand at 3386.022 kb on - strand at 3386.114 kb on + strand, within Pf6N2E2_2897 at 3386.114 kb on + strand, within Pf6N2E2_2897 at 3386.114 kb on + strand, within Pf6N2E2_2897 at 3386.114 kb on + strand, within Pf6N2E2_2897 at 3386.114 kb on + strand, within Pf6N2E2_2897 at 3386.114 kb on + strand, within Pf6N2E2_2897 at 3386.115 kb on - strand, within Pf6N2E2_2897 at 3386.115 kb on - strand, within Pf6N2E2_2897 at 3386.115 kb on - strand, within Pf6N2E2_2897 at 3386.115 kb on - strand, within Pf6N2E2_2897 at 3386.354 kb on + strand, within Pf6N2E2_2897 at 3386.354 kb on + strand, within Pf6N2E2_2897 at 3386.354 kb on + strand, within Pf6N2E2_2897 at 3386.354 kb on + strand, within Pf6N2E2_2897 at 3386.354 kb on + strand, within Pf6N2E2_2897 at 3386.354 kb on + strand, within Pf6N2E2_2897 at 3386.355 kb on - strand, within Pf6N2E2_2897 at 3386.355 kb on - strand, within Pf6N2E2_2897 at 3386.463 kb on + strand, within Pf6N2E2_2897 at 3386.463 kb on + strand, within Pf6N2E2_2897 at 3386.464 kb on - strand, within Pf6N2E2_2897 at 3386.464 kb on - strand, within Pf6N2E2_2897 at 3386.464 kb on - strand, within Pf6N2E2_2897 at 3386.464 kb on - strand, within Pf6N2E2_2897 at 3386.464 kb on - strand, within Pf6N2E2_2897 at 3386.533 kb on + strand, within Pf6N2E2_2897 at 3386.533 kb on + strand, within Pf6N2E2_2897 at 3386.667 kb on + strand, within Pf6N2E2_2897 at 3386.756 kb on + strand, within Pf6N2E2_2897 at 3386.757 kb on - strand, within Pf6N2E2_2897 at 3386.786 kb on + strand, within Pf6N2E2_2897 at 3386.787 kb on - strand, within Pf6N2E2_2897 at 3386.892 kb on - strand at 3386.892 kb on - strand at 3386.892 kb on - strand at 3386.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,385,432 + Pf6N2E2_2896 0.57 -1.3 3,385,432 + Pf6N2E2_2896 0.57 -0.9 3,385,432 + Pf6N2E2_2896 0.57 -0.4 3,385,432 + Pf6N2E2_2896 0.57 +0.0 3,385,433 - Pf6N2E2_2896 0.57 +0.1 3,385,545 + Pf6N2E2_2896 0.73 -0.4 3,385,545 + Pf6N2E2_2896 0.73 -0.5 3,385,675 + -1.1 3,385,675 + +0.5 3,385,675 + -0.2 3,385,675 + -1.3 3,385,675 + +0.6 3,385,675 + -1.2 3,385,675 + +0.2 3,385,676 - +0.9 3,385,676 - -1.2 3,385,779 + -1.7 3,385,780 - +0.1 3,385,799 + -0.9 3,385,800 - -0.1 3,385,800 - +0.5 3,385,810 + -0.2 3,385,811 - -0.5 3,385,913 - -0.0 3,385,913 - +0.9 3,385,913 - +0.2 3,385,922 - +0.5 3,386,022 - -3.8 3,386,114 + Pf6N2E2_2897 0.19 -4.0 3,386,114 + Pf6N2E2_2897 0.19 -3.3 3,386,114 + Pf6N2E2_2897 0.19 -2.9 3,386,114 + Pf6N2E2_2897 0.19 -2.2 3,386,114 + Pf6N2E2_2897 0.19 -3.4 3,386,114 + Pf6N2E2_2897 0.19 -3.7 3,386,115 - Pf6N2E2_2897 0.19 -1.6 3,386,115 - Pf6N2E2_2897 0.19 -4.1 3,386,115 - Pf6N2E2_2897 0.19 -2.2 3,386,115 - Pf6N2E2_2897 0.19 -3.8 3,386,354 + Pf6N2E2_2897 0.44 -4.3 3,386,354 + Pf6N2E2_2897 0.44 -2.7 3,386,354 + Pf6N2E2_2897 0.44 -4.1 3,386,354 + Pf6N2E2_2897 0.44 -4.1 3,386,354 + Pf6N2E2_2897 0.44 -1.7 3,386,354 + Pf6N2E2_2897 0.44 -3.4 3,386,355 - Pf6N2E2_2897 0.44 -3.5 3,386,355 - Pf6N2E2_2897 0.44 -2.2 3,386,463 + Pf6N2E2_2897 0.56 -0.4 3,386,463 + Pf6N2E2_2897 0.56 -3.7 3,386,464 - Pf6N2E2_2897 0.56 -2.8 3,386,464 - Pf6N2E2_2897 0.56 -2.9 3,386,464 - Pf6N2E2_2897 0.56 -0.7 3,386,464 - Pf6N2E2_2897 0.56 -3.4 3,386,464 - Pf6N2E2_2897 0.56 -4.3 3,386,533 + Pf6N2E2_2897 0.63 -3.1 3,386,533 + Pf6N2E2_2897 0.63 -3.2 3,386,667 + Pf6N2E2_2897 0.77 -3.5 3,386,756 + Pf6N2E2_2897 0.86 -3.9 3,386,757 - Pf6N2E2_2897 0.86 -3.6 3,386,786 + Pf6N2E2_2897 0.89 -2.9 3,386,787 - Pf6N2E2_2897 0.89 -3.8 3,386,892 - -3.7 3,386,892 - -3.4 3,386,892 - -3.1 3,386,892 - -5.1
Or see this region's nucleotide sequence