Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2897

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2895 and Pf6N2E2_2896 overlap by 11 nucleotidesPf6N2E2_2896 and Pf6N2E2_2897 are separated by 184 nucleotidesPf6N2E2_2897 and Pf6N2E2_2898 overlap by 4 nucleotides Pf6N2E2_2895 - Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster, at 3,383,555 to 3,385,024 _2895 Pf6N2E2_2896 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 3,385,014 to 3,385,745 _2896 Pf6N2E2_2897 - Glucokinase (EC 2.7.1.2), at 3,385,930 to 3,386,889 _2897 Pf6N2E2_2898 - Phosphogluconate dehydratase (EC 4.2.1.12), at 3,386,886 to 3,388,712 _2898 Position (kb) 3385 3386 3387Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3385.432 kb on + strand, within Pf6N2E2_2896at 3385.432 kb on + strand, within Pf6N2E2_2896at 3385.432 kb on + strand, within Pf6N2E2_2896at 3385.432 kb on + strand, within Pf6N2E2_2896at 3385.433 kb on - strand, within Pf6N2E2_2896at 3385.545 kb on + strand, within Pf6N2E2_2896at 3385.545 kb on + strand, within Pf6N2E2_2896at 3385.675 kb on + strandat 3385.675 kb on + strandat 3385.675 kb on + strandat 3385.675 kb on + strandat 3385.675 kb on + strandat 3385.675 kb on + strandat 3385.675 kb on + strandat 3385.676 kb on - strandat 3385.676 kb on - strandat 3385.779 kb on + strandat 3385.780 kb on - strandat 3385.799 kb on + strandat 3385.800 kb on - strandat 3385.800 kb on - strandat 3385.810 kb on + strandat 3385.811 kb on - strandat 3385.913 kb on - strandat 3385.913 kb on - strandat 3385.913 kb on - strandat 3385.922 kb on - strandat 3386.022 kb on - strandat 3386.114 kb on + strand, within Pf6N2E2_2897at 3386.114 kb on + strand, within Pf6N2E2_2897at 3386.114 kb on + strand, within Pf6N2E2_2897at 3386.114 kb on + strand, within Pf6N2E2_2897at 3386.114 kb on + strand, within Pf6N2E2_2897at 3386.114 kb on + strand, within Pf6N2E2_2897at 3386.115 kb on - strand, within Pf6N2E2_2897at 3386.115 kb on - strand, within Pf6N2E2_2897at 3386.115 kb on - strand, within Pf6N2E2_2897at 3386.115 kb on - strand, within Pf6N2E2_2897at 3386.354 kb on + strand, within Pf6N2E2_2897at 3386.354 kb on + strand, within Pf6N2E2_2897at 3386.354 kb on + strand, within Pf6N2E2_2897at 3386.354 kb on + strand, within Pf6N2E2_2897at 3386.354 kb on + strand, within Pf6N2E2_2897at 3386.354 kb on + strand, within Pf6N2E2_2897at 3386.355 kb on - strand, within Pf6N2E2_2897at 3386.355 kb on - strand, within Pf6N2E2_2897at 3386.463 kb on + strand, within Pf6N2E2_2897at 3386.463 kb on + strand, within Pf6N2E2_2897at 3386.464 kb on - strand, within Pf6N2E2_2897at 3386.464 kb on - strand, within Pf6N2E2_2897at 3386.464 kb on - strand, within Pf6N2E2_2897at 3386.464 kb on - strand, within Pf6N2E2_2897at 3386.464 kb on - strand, within Pf6N2E2_2897at 3386.533 kb on + strand, within Pf6N2E2_2897at 3386.533 kb on + strand, within Pf6N2E2_2897at 3386.667 kb on + strand, within Pf6N2E2_2897at 3386.756 kb on + strand, within Pf6N2E2_2897at 3386.757 kb on - strand, within Pf6N2E2_2897at 3386.786 kb on + strand, within Pf6N2E2_2897at 3386.787 kb on - strand, within Pf6N2E2_2897at 3386.892 kb on - strandat 3386.892 kb on - strandat 3386.892 kb on - strandat 3386.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,385,432 + Pf6N2E2_2896 0.57 -1.3
3,385,432 + Pf6N2E2_2896 0.57 -0.9
3,385,432 + Pf6N2E2_2896 0.57 -0.4
3,385,432 + Pf6N2E2_2896 0.57 +0.0
3,385,433 - Pf6N2E2_2896 0.57 +0.1
3,385,545 + Pf6N2E2_2896 0.73 -0.4
3,385,545 + Pf6N2E2_2896 0.73 -0.5
3,385,675 + -1.1
3,385,675 + +0.5
3,385,675 + -0.2
3,385,675 + -1.3
3,385,675 + +0.6
3,385,675 + -1.2
3,385,675 + +0.2
3,385,676 - +0.9
3,385,676 - -1.2
3,385,779 + -1.7
3,385,780 - +0.1
3,385,799 + -0.9
3,385,800 - -0.1
3,385,800 - +0.5
3,385,810 + -0.2
3,385,811 - -0.5
3,385,913 - -0.0
3,385,913 - +0.9
3,385,913 - +0.2
3,385,922 - +0.5
3,386,022 - -3.8
3,386,114 + Pf6N2E2_2897 0.19 -4.0
3,386,114 + Pf6N2E2_2897 0.19 -3.3
3,386,114 + Pf6N2E2_2897 0.19 -2.9
3,386,114 + Pf6N2E2_2897 0.19 -2.2
3,386,114 + Pf6N2E2_2897 0.19 -3.4
3,386,114 + Pf6N2E2_2897 0.19 -3.7
3,386,115 - Pf6N2E2_2897 0.19 -1.6
3,386,115 - Pf6N2E2_2897 0.19 -4.1
3,386,115 - Pf6N2E2_2897 0.19 -2.2
3,386,115 - Pf6N2E2_2897 0.19 -3.8
3,386,354 + Pf6N2E2_2897 0.44 -4.3
3,386,354 + Pf6N2E2_2897 0.44 -2.7
3,386,354 + Pf6N2E2_2897 0.44 -4.1
3,386,354 + Pf6N2E2_2897 0.44 -4.1
3,386,354 + Pf6N2E2_2897 0.44 -1.7
3,386,354 + Pf6N2E2_2897 0.44 -3.4
3,386,355 - Pf6N2E2_2897 0.44 -3.5
3,386,355 - Pf6N2E2_2897 0.44 -2.2
3,386,463 + Pf6N2E2_2897 0.56 -0.4
3,386,463 + Pf6N2E2_2897 0.56 -3.7
3,386,464 - Pf6N2E2_2897 0.56 -2.8
3,386,464 - Pf6N2E2_2897 0.56 -2.9
3,386,464 - Pf6N2E2_2897 0.56 -0.7
3,386,464 - Pf6N2E2_2897 0.56 -3.4
3,386,464 - Pf6N2E2_2897 0.56 -4.3
3,386,533 + Pf6N2E2_2897 0.63 -3.1
3,386,533 + Pf6N2E2_2897 0.63 -3.2
3,386,667 + Pf6N2E2_2897 0.77 -3.5
3,386,756 + Pf6N2E2_2897 0.86 -3.9
3,386,757 - Pf6N2E2_2897 0.86 -3.6
3,386,786 + Pf6N2E2_2897 0.89 -2.9
3,386,787 - Pf6N2E2_2897 0.89 -3.8
3,386,892 - -3.7
3,386,892 - -3.4
3,386,892 - -3.1
3,386,892 - -5.1

Or see this region's nucleotide sequence