Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2629 and Pf6N2E2_2630 are separated by 411 nucleotides Pf6N2E2_2630 and Pf6N2E2_2631 are separated by 54 nucleotides Pf6N2E2_2631 and Pf6N2E2_2632 overlap by 1 nucleotides
Pf6N2E2_2629 - Phenylalanine hydroxylase transcriptional activator PhhR, at 3,090,762 to 3,092,324
_2629
Pf6N2E2_2630 - Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) , at 3,092,736 to 3,093,521
_2630
Pf6N2E2_2631 - Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96), at 3,093,576 to 3,093,977
_2631
Pf6N2E2_2632 - tyrosine aminotransferase (EC 2.6.1.57) (from data) , at 3,093,977 to 3,095,170
_2632
Position (kb)
3092
3093
3094 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.744 kb on + strand, within Pf6N2E2_2629 at 3091.745 kb on - strand, within Pf6N2E2_2629 at 3092.200 kb on + strand at 3092.200 kb on + strand at 3092.200 kb on + strand at 3092.200 kb on + strand at 3092.201 kb on - strand at 3092.201 kb on - strand at 3092.201 kb on - strand at 3092.249 kb on + strand at 3092.254 kb on + strand at 3092.522 kb on - strand at 3092.583 kb on + strand at 3092.584 kb on - strand at 3092.584 kb on - strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.613 kb on + strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.614 kb on - strand at 3092.666 kb on + strand at 3092.672 kb on + strand at 3092.689 kb on + strand at 3092.689 kb on + strand at 3092.690 kb on - strand at 3092.751 kb on + strand at 3092.751 kb on + strand at 3092.752 kb on - strand at 3092.790 kb on + strand at 3092.791 kb on - strand at 3092.871 kb on + strand, within Pf6N2E2_2630 at 3092.872 kb on - strand, within Pf6N2E2_2630 at 3093.073 kb on - strand, within Pf6N2E2_2630 at 3093.073 kb on - strand, within Pf6N2E2_2630 at 3093.201 kb on + strand, within Pf6N2E2_2630 at 3093.216 kb on + strand, within Pf6N2E2_2630 at 3093.216 kb on + strand, within Pf6N2E2_2630 at 3093.270 kb on + strand, within Pf6N2E2_2630 at 3093.270 kb on + strand, within Pf6N2E2_2630 at 3093.309 kb on + strand, within Pf6N2E2_2630 at 3093.309 kb on + strand, within Pf6N2E2_2630 at 3093.310 kb on - strand, within Pf6N2E2_2630 at 3093.310 kb on - strand, within Pf6N2E2_2630 at 3093.400 kb on - strand, within Pf6N2E2_2630 at 3093.534 kb on - strand at 3093.534 kb on - strand at 3093.534 kb on - strand at 3093.600 kb on + strand at 3093.600 kb on + strand at 3093.601 kb on - strand at 3093.601 kb on - strand at 3093.975 kb on + strand at 3093.975 kb on + strand at 3093.975 kb on + strand at 3093.976 kb on - strand at 3093.976 kb on - strand at 3093.976 kb on - strand at 3093.976 kb on - strand at 3093.976 kb on - strand at 3093.976 kb on - strand at 3094.172 kb on + strand, within Pf6N2E2_2632 at 3094.172 kb on + strand, within Pf6N2E2_2632 at 3094.172 kb on + strand, within Pf6N2E2_2632 at 3094.224 kb on + strand, within Pf6N2E2_2632 at 3094.225 kb on - strand, within Pf6N2E2_2632 at 3094.225 kb on - strand, within Pf6N2E2_2632 at 3094.419 kb on - strand, within Pf6N2E2_2632 at 3094.424 kb on + strand, within Pf6N2E2_2632 at 3094.424 kb on + strand, within Pf6N2E2_2632 at 3094.425 kb on - strand, within Pf6N2E2_2632 at 3094.425 kb on - strand, within Pf6N2E2_2632
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,091,744 + Pf6N2E2_2629 0.63 -3.6 3,091,744 + Pf6N2E2_2629 0.63 -3.0 3,091,744 + Pf6N2E2_2629 0.63 -4.4 3,091,744 + Pf6N2E2_2629 0.63 -3.6 3,091,744 + Pf6N2E2_2629 0.63 -3.2 3,091,744 + Pf6N2E2_2629 0.63 -3.0 3,091,744 + Pf6N2E2_2629 0.63 -4.2 3,091,744 + Pf6N2E2_2629 0.63 -3.5 3,091,744 + Pf6N2E2_2629 0.63 -3.3 3,091,744 + Pf6N2E2_2629 0.63 -4.9 3,091,745 - Pf6N2E2_2629 0.63 -2.5 3,092,200 + -4.2 3,092,200 + -3.9 3,092,200 + -2.9 3,092,200 + -4.1 3,092,201 - -3.6 3,092,201 - -3.6 3,092,201 - -3.6 3,092,249 + -4.5 3,092,254 + -4.1 3,092,522 - -1.5 3,092,583 + -3.9 3,092,584 - -1.9 3,092,584 - -4.6 3,092,613 + -3.6 3,092,613 + -4.1 3,092,613 + -3.2 3,092,613 + -3.1 3,092,613 + -3.4 3,092,614 - -3.4 3,092,614 - -4.1 3,092,614 - -4.8 3,092,614 - -2.7 3,092,614 - -1.9 3,092,614 - -3.6 3,092,614 - -4.5 3,092,614 - -3.1 3,092,614 - -4.5 3,092,614 - -1.0 3,092,614 - -3.2 3,092,666 + -1.9 3,092,672 + -0.3 3,092,689 + +0.5 3,092,689 + +0.0 3,092,690 - -3.2 3,092,751 + -3.4 3,092,751 + -4.1 3,092,752 - -3.3 3,092,790 + -2.5 3,092,791 - -2.7 3,092,871 + Pf6N2E2_2630 0.17 -3.0 3,092,872 - Pf6N2E2_2630 0.17 -3.5 3,093,073 - Pf6N2E2_2630 0.43 -2.5 3,093,073 - Pf6N2E2_2630 0.43 -2.7 3,093,201 + Pf6N2E2_2630 0.59 -3.4 3,093,216 + Pf6N2E2_2630 0.61 -3.6 3,093,216 + Pf6N2E2_2630 0.61 -4.2 3,093,270 + Pf6N2E2_2630 0.68 -3.4 3,093,270 + Pf6N2E2_2630 0.68 -4.1 3,093,309 + Pf6N2E2_2630 0.73 -2.3 3,093,309 + Pf6N2E2_2630 0.73 -3.9 3,093,310 - Pf6N2E2_2630 0.73 -0.5 3,093,310 - Pf6N2E2_2630 0.73 -2.4 3,093,400 - Pf6N2E2_2630 0.84 -5.0 3,093,534 - -2.9 3,093,534 - -3.5 3,093,534 - -2.9 3,093,600 + -0.5 3,093,600 + -0.7 3,093,601 - -3.6 3,093,601 - -1.8 3,093,975 + -2.7 3,093,975 + -4.9 3,093,975 + -3.1 3,093,976 - -3.5 3,093,976 - -2.9 3,093,976 - -2.7 3,093,976 - -4.3 3,093,976 - -4.6 3,093,976 - -1.5 3,094,172 + Pf6N2E2_2632 0.16 -1.9 3,094,172 + Pf6N2E2_2632 0.16 -3.9 3,094,172 + Pf6N2E2_2632 0.16 -1.0 3,094,224 + Pf6N2E2_2632 0.21 -3.5 3,094,225 - Pf6N2E2_2632 0.21 -3.3 3,094,225 - Pf6N2E2_2632 0.21 -2.5 3,094,419 - Pf6N2E2_2632 0.37 -4.2 3,094,424 + Pf6N2E2_2632 0.37 -4.6 3,094,424 + Pf6N2E2_2632 0.37 -3.0 3,094,425 - Pf6N2E2_2632 0.38 -4.1 3,094,425 - Pf6N2E2_2632 0.38 -3.1
Or see this region's nucleotide sequence