Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2630

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2629 and Pf6N2E2_2630 are separated by 411 nucleotidesPf6N2E2_2630 and Pf6N2E2_2631 are separated by 54 nucleotidesPf6N2E2_2631 and Pf6N2E2_2632 overlap by 1 nucleotides Pf6N2E2_2629 - Phenylalanine hydroxylase transcriptional activator PhhR, at 3,090,762 to 3,092,324 _2629 Pf6N2E2_2630 - Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data), at 3,092,736 to 3,093,521 _2630 Pf6N2E2_2631 - Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96), at 3,093,576 to 3,093,977 _2631 Pf6N2E2_2632 - tyrosine aminotransferase (EC 2.6.1.57) (from data), at 3,093,977 to 3,095,170 _2632 Position (kb) 3092 3093 3094Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.744 kb on + strand, within Pf6N2E2_2629at 3091.745 kb on - strand, within Pf6N2E2_2629at 3092.200 kb on + strandat 3092.200 kb on + strandat 3092.200 kb on + strandat 3092.200 kb on + strandat 3092.201 kb on - strandat 3092.201 kb on - strandat 3092.201 kb on - strandat 3092.249 kb on + strandat 3092.254 kb on + strandat 3092.522 kb on - strandat 3092.583 kb on + strandat 3092.584 kb on - strandat 3092.584 kb on - strandat 3092.613 kb on + strandat 3092.613 kb on + strandat 3092.613 kb on + strandat 3092.613 kb on + strandat 3092.613 kb on + strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.614 kb on - strandat 3092.666 kb on + strandat 3092.672 kb on + strandat 3092.689 kb on + strandat 3092.689 kb on + strandat 3092.690 kb on - strandat 3092.751 kb on + strandat 3092.751 kb on + strandat 3092.752 kb on - strandat 3092.790 kb on + strandat 3092.791 kb on - strandat 3092.871 kb on + strand, within Pf6N2E2_2630at 3092.872 kb on - strand, within Pf6N2E2_2630at 3093.073 kb on - strand, within Pf6N2E2_2630at 3093.073 kb on - strand, within Pf6N2E2_2630at 3093.201 kb on + strand, within Pf6N2E2_2630at 3093.216 kb on + strand, within Pf6N2E2_2630at 3093.216 kb on + strand, within Pf6N2E2_2630at 3093.270 kb on + strand, within Pf6N2E2_2630at 3093.270 kb on + strand, within Pf6N2E2_2630at 3093.309 kb on + strand, within Pf6N2E2_2630at 3093.309 kb on + strand, within Pf6N2E2_2630at 3093.310 kb on - strand, within Pf6N2E2_2630at 3093.310 kb on - strand, within Pf6N2E2_2630at 3093.400 kb on - strand, within Pf6N2E2_2630at 3093.534 kb on - strandat 3093.534 kb on - strandat 3093.534 kb on - strandat 3093.600 kb on + strandat 3093.600 kb on + strandat 3093.601 kb on - strandat 3093.601 kb on - strandat 3093.975 kb on + strandat 3093.975 kb on + strandat 3093.975 kb on + strandat 3093.976 kb on - strandat 3093.976 kb on - strandat 3093.976 kb on - strandat 3093.976 kb on - strandat 3093.976 kb on - strandat 3093.976 kb on - strandat 3094.172 kb on + strand, within Pf6N2E2_2632at 3094.172 kb on + strand, within Pf6N2E2_2632at 3094.172 kb on + strand, within Pf6N2E2_2632at 3094.224 kb on + strand, within Pf6N2E2_2632at 3094.225 kb on - strand, within Pf6N2E2_2632at 3094.225 kb on - strand, within Pf6N2E2_2632at 3094.419 kb on - strand, within Pf6N2E2_2632at 3094.424 kb on + strand, within Pf6N2E2_2632at 3094.424 kb on + strand, within Pf6N2E2_2632at 3094.425 kb on - strand, within Pf6N2E2_2632at 3094.425 kb on - strand, within Pf6N2E2_2632

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,091,744 + Pf6N2E2_2629 0.63 -3.6
3,091,744 + Pf6N2E2_2629 0.63 -3.0
3,091,744 + Pf6N2E2_2629 0.63 -4.4
3,091,744 + Pf6N2E2_2629 0.63 -3.6
3,091,744 + Pf6N2E2_2629 0.63 -3.2
3,091,744 + Pf6N2E2_2629 0.63 -3.0
3,091,744 + Pf6N2E2_2629 0.63 -4.2
3,091,744 + Pf6N2E2_2629 0.63 -3.5
3,091,744 + Pf6N2E2_2629 0.63 -3.3
3,091,744 + Pf6N2E2_2629 0.63 -4.9
3,091,745 - Pf6N2E2_2629 0.63 -2.5
3,092,200 + -4.2
3,092,200 + -3.9
3,092,200 + -2.9
3,092,200 + -4.1
3,092,201 - -3.6
3,092,201 - -3.6
3,092,201 - -3.6
3,092,249 + -4.5
3,092,254 + -4.1
3,092,522 - -1.5
3,092,583 + -3.9
3,092,584 - -1.9
3,092,584 - -4.6
3,092,613 + -3.6
3,092,613 + -4.1
3,092,613 + -3.2
3,092,613 + -3.1
3,092,613 + -3.4
3,092,614 - -3.4
3,092,614 - -4.1
3,092,614 - -4.8
3,092,614 - -2.7
3,092,614 - -1.9
3,092,614 - -3.6
3,092,614 - -4.5
3,092,614 - -3.1
3,092,614 - -4.5
3,092,614 - -1.0
3,092,614 - -3.2
3,092,666 + -1.9
3,092,672 + -0.3
3,092,689 + +0.5
3,092,689 + +0.0
3,092,690 - -3.2
3,092,751 + -3.4
3,092,751 + -4.1
3,092,752 - -3.3
3,092,790 + -2.5
3,092,791 - -2.7
3,092,871 + Pf6N2E2_2630 0.17 -3.0
3,092,872 - Pf6N2E2_2630 0.17 -3.5
3,093,073 - Pf6N2E2_2630 0.43 -2.5
3,093,073 - Pf6N2E2_2630 0.43 -2.7
3,093,201 + Pf6N2E2_2630 0.59 -3.4
3,093,216 + Pf6N2E2_2630 0.61 -3.6
3,093,216 + Pf6N2E2_2630 0.61 -4.2
3,093,270 + Pf6N2E2_2630 0.68 -3.4
3,093,270 + Pf6N2E2_2630 0.68 -4.1
3,093,309 + Pf6N2E2_2630 0.73 -2.3
3,093,309 + Pf6N2E2_2630 0.73 -3.9
3,093,310 - Pf6N2E2_2630 0.73 -0.5
3,093,310 - Pf6N2E2_2630 0.73 -2.4
3,093,400 - Pf6N2E2_2630 0.84 -5.0
3,093,534 - -2.9
3,093,534 - -3.5
3,093,534 - -2.9
3,093,600 + -0.5
3,093,600 + -0.7
3,093,601 - -3.6
3,093,601 - -1.8
3,093,975 + -2.7
3,093,975 + -4.9
3,093,975 + -3.1
3,093,976 - -3.5
3,093,976 - -2.9
3,093,976 - -2.7
3,093,976 - -4.3
3,093,976 - -4.6
3,093,976 - -1.5
3,094,172 + Pf6N2E2_2632 0.16 -1.9
3,094,172 + Pf6N2E2_2632 0.16 -3.9
3,094,172 + Pf6N2E2_2632 0.16 -1.0
3,094,224 + Pf6N2E2_2632 0.21 -3.5
3,094,225 - Pf6N2E2_2632 0.21 -3.3
3,094,225 - Pf6N2E2_2632 0.21 -2.5
3,094,419 - Pf6N2E2_2632 0.37 -4.2
3,094,424 + Pf6N2E2_2632 0.37 -4.6
3,094,424 + Pf6N2E2_2632 0.37 -3.0
3,094,425 - Pf6N2E2_2632 0.38 -4.1
3,094,425 - Pf6N2E2_2632 0.38 -3.1

Or see this region's nucleotide sequence