Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2403 and Pf6N2E2_2404 are separated by 335 nucleotides Pf6N2E2_2404 and Pf6N2E2_2405 are separated by 140 nucleotides
Pf6N2E2_2403 - Pyoverdine chromophore precursor synthetase PvdL, at 2,841,860 to 2,854,846
_2403
Pf6N2E2_2404 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 2,855,182 to 2,855,676
_2404
Pf6N2E2_2405 - Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase, at 2,855,817 to 2,856,830
_2405
Position (kb)
2855
2856 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2854.207 kb on - strand at 2854.207 kb on - strand at 2854.207 kb on - strand at 2854.344 kb on + strand at 2854.344 kb on + strand at 2854.344 kb on + strand at 2854.345 kb on - strand at 2854.345 kb on - strand at 2854.345 kb on - strand at 2854.345 kb on - strand at 2854.590 kb on + strand at 2854.591 kb on - strand at 2854.617 kb on + strand at 2854.691 kb on - strand at 2854.910 kb on + strand at 2854.911 kb on - strand at 2854.911 kb on - strand at 2854.911 kb on - strand at 2854.911 kb on - strand at 2854.915 kb on - strand at 2855.103 kb on - strand at 2855.103 kb on - strand at 2855.141 kb on + strand at 2855.142 kb on - strand at 2855.169 kb on - strand at 2855.323 kb on + strand, within Pf6N2E2_2404 at 2855.323 kb on + strand, within Pf6N2E2_2404 at 2855.323 kb on + strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.324 kb on - strand, within Pf6N2E2_2404 at 2855.389 kb on + strand, within Pf6N2E2_2404 at 2855.390 kb on - strand, within Pf6N2E2_2404 at 2855.518 kb on + strand, within Pf6N2E2_2404 at 2855.533 kb on + strand, within Pf6N2E2_2404 at 2855.533 kb on + strand, within Pf6N2E2_2404 at 2855.533 kb on + strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.534 kb on - strand, within Pf6N2E2_2404 at 2855.658 kb on + strand at 2855.818 kb on + strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2855.819 kb on - strand at 2856.004 kb on + strand, within Pf6N2E2_2405 at 2856.004 kb on + strand, within Pf6N2E2_2405 at 2856.005 kb on - strand, within Pf6N2E2_2405 at 2856.091 kb on + strand, within Pf6N2E2_2405 at 2856.091 kb on + strand, within Pf6N2E2_2405 at 2856.092 kb on - strand, within Pf6N2E2_2405 at 2856.092 kb on - strand, within Pf6N2E2_2405 at 2856.107 kb on - strand, within Pf6N2E2_2405 at 2856.139 kb on + strand, within Pf6N2E2_2405 at 2856.140 kb on - strand, within Pf6N2E2_2405 at 2856.140 kb on - strand, within Pf6N2E2_2405 at 2856.151 kb on + strand, within Pf6N2E2_2405 at 2856.152 kb on - strand, within Pf6N2E2_2405 at 2856.223 kb on + strand, within Pf6N2E2_2405 at 2856.224 kb on - strand, within Pf6N2E2_2405 at 2856.483 kb on + strand, within Pf6N2E2_2405 at 2856.484 kb on - strand, within Pf6N2E2_2405 at 2856.629 kb on - strand, within Pf6N2E2_2405
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,854,207 - -1.4 2,854,207 - +1.0 2,854,207 - +0.6 2,854,344 + -0.6 2,854,344 + -0.9 2,854,344 + +0.9 2,854,345 - +1.7 2,854,345 - -0.3 2,854,345 - +0.0 2,854,345 - -0.5 2,854,590 + +0.5 2,854,591 - +0.1 2,854,617 + -0.3 2,854,691 - +1.0 2,854,910 + -0.5 2,854,911 - +0.8 2,854,911 - +1.2 2,854,911 - +0.2 2,854,911 - +1.2 2,854,915 - -0.6 2,855,103 - -0.2 2,855,103 - -0.3 2,855,141 + +0.1 2,855,142 - +0.7 2,855,169 - +1.5 2,855,323 + Pf6N2E2_2404 0.28 +2.5 2,855,323 + Pf6N2E2_2404 0.28 +0.3 2,855,323 + Pf6N2E2_2404 0.28 +0.2 2,855,324 - Pf6N2E2_2404 0.29 +0.4 2,855,324 - Pf6N2E2_2404 0.29 +0.1 2,855,324 - Pf6N2E2_2404 0.29 +1.8 2,855,324 - Pf6N2E2_2404 0.29 +0.5 2,855,324 - Pf6N2E2_2404 0.29 +1.0 2,855,389 + Pf6N2E2_2404 0.42 +2.3 2,855,390 - Pf6N2E2_2404 0.42 -0.5 2,855,518 + Pf6N2E2_2404 0.68 +0.1 2,855,533 + Pf6N2E2_2404 0.71 +1.0 2,855,533 + Pf6N2E2_2404 0.71 -0.3 2,855,533 + Pf6N2E2_2404 0.71 +0.4 2,855,534 - Pf6N2E2_2404 0.71 +0.6 2,855,534 - Pf6N2E2_2404 0.71 +0.2 2,855,534 - Pf6N2E2_2404 0.71 +0.8 2,855,534 - Pf6N2E2_2404 0.71 +1.0 2,855,534 - Pf6N2E2_2404 0.71 +0.8 2,855,658 + +0.1 2,855,818 + +0.0 2,855,819 - -0.1 2,855,819 - -0.4 2,855,819 - +0.2 2,855,819 - +0.7 2,855,819 - +0.3 2,855,819 - -0.2 2,855,819 - +0.4 2,855,819 - -0.1 2,856,004 + Pf6N2E2_2405 0.18 +0.0 2,856,004 + Pf6N2E2_2405 0.18 +0.9 2,856,005 - Pf6N2E2_2405 0.19 -0.4 2,856,091 + Pf6N2E2_2405 0.27 -0.1 2,856,091 + Pf6N2E2_2405 0.27 -0.0 2,856,092 - Pf6N2E2_2405 0.27 +1.2 2,856,092 - Pf6N2E2_2405 0.27 -0.0 2,856,107 - Pf6N2E2_2405 0.29 +0.1 2,856,139 + Pf6N2E2_2405 0.32 +0.2 2,856,140 - Pf6N2E2_2405 0.32 +0.0 2,856,140 - Pf6N2E2_2405 0.32 -0.1 2,856,151 + Pf6N2E2_2405 0.33 -0.1 2,856,152 - Pf6N2E2_2405 0.33 -0.9 2,856,223 + Pf6N2E2_2405 0.40 -0.3 2,856,224 - Pf6N2E2_2405 0.40 -2.2 2,856,483 + Pf6N2E2_2405 0.66 -0.0 2,856,484 - Pf6N2E2_2405 0.66 +0.0 2,856,629 - Pf6N2E2_2405 0.80 -0.4
Or see this region's nucleotide sequence