Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2185 and Pf6N2E2_2186 are separated by 156 nucleotides Pf6N2E2_2186 and Pf6N2E2_2187 are separated by 177 nucleotides
Pf6N2E2_2185 - carboxyphosphonoenolpyruvate phosphonomutase, putative, at 2,589,209 to 2,590,078
_2185
Pf6N2E2_2186 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 2,590,235 to 2,591,464
_2186
Pf6N2E2_2187 - Transcriptional regulator, LysR family, at 2,591,642 to 2,592,571
_2187
Position (kb)
2590
2591
2592 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2589.241 kb on + strand at 2589.275 kb on + strand at 2589.276 kb on - strand at 2589.339 kb on + strand, within Pf6N2E2_2185 at 2589.339 kb on + strand, within Pf6N2E2_2185 at 2589.339 kb on + strand, within Pf6N2E2_2185 at 2589.339 kb on + strand, within Pf6N2E2_2185 at 2589.340 kb on - strand, within Pf6N2E2_2185 at 2589.486 kb on - strand, within Pf6N2E2_2185 at 2589.737 kb on + strand, within Pf6N2E2_2185 at 2589.738 kb on - strand, within Pf6N2E2_2185 at 2589.738 kb on - strand, within Pf6N2E2_2185 at 2589.738 kb on - strand, within Pf6N2E2_2185 at 2589.738 kb on - strand, within Pf6N2E2_2185 at 2589.738 kb on - strand, within Pf6N2E2_2185 at 2589.738 kb on - strand, within Pf6N2E2_2185 at 2589.842 kb on + strand, within Pf6N2E2_2185 at 2589.842 kb on + strand, within Pf6N2E2_2185 at 2589.842 kb on + strand, within Pf6N2E2_2185 at 2589.842 kb on + strand, within Pf6N2E2_2185 at 2589.842 kb on + strand, within Pf6N2E2_2185 at 2589.843 kb on - strand, within Pf6N2E2_2185 at 2589.858 kb on + strand, within Pf6N2E2_2185 at 2589.859 kb on - strand, within Pf6N2E2_2185 at 2589.892 kb on - strand, within Pf6N2E2_2185 at 2589.892 kb on - strand, within Pf6N2E2_2185 at 2589.892 kb on - strand, within Pf6N2E2_2185 at 2589.944 kb on + strand, within Pf6N2E2_2185 at 2589.944 kb on + strand, within Pf6N2E2_2185 at 2589.944 kb on + strand, within Pf6N2E2_2185 at 2589.945 kb on - strand, within Pf6N2E2_2185 at 2589.945 kb on - strand, within Pf6N2E2_2185 at 2589.945 kb on - strand, within Pf6N2E2_2185 at 2589.945 kb on - strand, within Pf6N2E2_2185 at 2589.945 kb on - strand, within Pf6N2E2_2185 at 2590.019 kb on + strand at 2590.019 kb on + strand at 2590.020 kb on - strand at 2590.020 kb on - strand at 2590.020 kb on - strand at 2590.020 kb on - strand at 2590.020 kb on - strand at 2590.037 kb on + strand at 2590.037 kb on + strand at 2590.037 kb on + strand at 2590.037 kb on + strand at 2590.037 kb on + strand at 2590.037 kb on + strand at 2590.038 kb on - strand at 2590.038 kb on - strand at 2590.038 kb on - strand at 2590.038 kb on - strand at 2590.058 kb on + strand at 2590.059 kb on - strand at 2590.059 kb on - strand at 2590.059 kb on - strand at 2590.059 kb on - strand at 2590.077 kb on - strand at 2590.224 kb on - strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.269 kb on + strand at 2590.270 kb on - strand at 2590.270 kb on - strand at 2590.270 kb on - strand at 2590.270 kb on - strand at 2590.270 kb on - strand at 2590.353 kb on + strand at 2590.353 kb on + strand at 2590.354 kb on - strand at 2590.354 kb on - strand at 2590.354 kb on - strand at 2590.354 kb on - strand at 2590.354 kb on - strand at 2590.359 kb on + strand, within Pf6N2E2_2186 at 2590.359 kb on + strand, within Pf6N2E2_2186 at 2590.359 kb on + strand, within Pf6N2E2_2186 at 2590.359 kb on + strand, within Pf6N2E2_2186 at 2590.360 kb on - strand, within Pf6N2E2_2186 at 2590.360 kb on - strand, within Pf6N2E2_2186 at 2590.360 kb on - strand, within Pf6N2E2_2186 at 2590.360 kb on - strand, within Pf6N2E2_2186 at 2590.360 kb on - strand, within Pf6N2E2_2186 at 2590.360 kb on - strand, within Pf6N2E2_2186 at 2590.507 kb on - strand, within Pf6N2E2_2186 at 2590.507 kb on - strand, within Pf6N2E2_2186 at 2590.507 kb on - strand, within Pf6N2E2_2186 at 2590.507 kb on - strand, within Pf6N2E2_2186 at 2591.232 kb on + strand, within Pf6N2E2_2186 at 2591.398 kb on - strand at 2591.451 kb on + strand at 2591.495 kb on - strand at 2591.495 kb on - strand at 2591.495 kb on - strand at 2591.495 kb on - strand at 2591.495 kb on - strand at 2591.495 kb on - strand at 2591.495 kb on - strand at 2591.513 kb on + strand at 2591.513 kb on + strand at 2591.514 kb on - strand at 2591.537 kb on - strand at 2591.576 kb on - strand at 2591.627 kb on + strand at 2591.628 kb on - strand at 2591.693 kb on + strand at 2591.693 kb on + strand at 2591.693 kb on + strand at 2591.693 kb on + strand at 2591.694 kb on - strand at 2592.013 kb on + strand, within Pf6N2E2_2187 at 2592.013 kb on + strand, within Pf6N2E2_2187 at 2592.014 kb on - strand, within Pf6N2E2_2187 at 2592.014 kb on - strand, within Pf6N2E2_2187 at 2592.014 kb on - strand, within Pf6N2E2_2187 at 2592.123 kb on + strand, within Pf6N2E2_2187 at 2592.152 kb on + strand, within Pf6N2E2_2187 at 2592.152 kb on + strand, within Pf6N2E2_2187 at 2592.153 kb on - strand, within Pf6N2E2_2187 at 2592.153 kb on - strand, within Pf6N2E2_2187 at 2592.215 kb on + strand, within Pf6N2E2_2187 at 2592.238 kb on + strand, within Pf6N2E2_2187 at 2592.238 kb on + strand, within Pf6N2E2_2187 at 2592.239 kb on - strand, within Pf6N2E2_2187 at 2592.239 kb on - strand, within Pf6N2E2_2187 at 2592.266 kb on + strand, within Pf6N2E2_2187 at 2592.267 kb on - strand, within Pf6N2E2_2187 at 2592.267 kb on - strand, within Pf6N2E2_2187 at 2592.267 kb on - strand, within Pf6N2E2_2187 at 2592.329 kb on + strand, within Pf6N2E2_2187 at 2592.329 kb on + strand, within Pf6N2E2_2187 at 2592.329 kb on + strand, within Pf6N2E2_2187 at 2592.329 kb on + strand, within Pf6N2E2_2187 at 2592.329 kb on + strand, within Pf6N2E2_2187 at 2592.330 kb on - strand, within Pf6N2E2_2187 at 2592.330 kb on - strand, within Pf6N2E2_2187
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,589,241 + -0.4 2,589,275 + -1.5 2,589,276 - -0.1 2,589,339 + Pf6N2E2_2185 0.15 -0.8 2,589,339 + Pf6N2E2_2185 0.15 -0.7 2,589,339 + Pf6N2E2_2185 0.15 +0.5 2,589,339 + Pf6N2E2_2185 0.15 +1.2 2,589,340 - Pf6N2E2_2185 0.15 -0.2 2,589,486 - Pf6N2E2_2185 0.32 +0.3 2,589,737 + Pf6N2E2_2185 0.61 +0.4 2,589,738 - Pf6N2E2_2185 0.61 +0.2 2,589,738 - Pf6N2E2_2185 0.61 -0.1 2,589,738 - Pf6N2E2_2185 0.61 -0.2 2,589,738 - Pf6N2E2_2185 0.61 -0.1 2,589,738 - Pf6N2E2_2185 0.61 -0.6 2,589,738 - Pf6N2E2_2185 0.61 +0.6 2,589,842 + Pf6N2E2_2185 0.73 +0.1 2,589,842 + Pf6N2E2_2185 0.73 +1.0 2,589,842 + Pf6N2E2_2185 0.73 +0.1 2,589,842 + Pf6N2E2_2185 0.73 -1.7 2,589,842 + Pf6N2E2_2185 0.73 -0.7 2,589,843 - Pf6N2E2_2185 0.73 +0.9 2,589,858 + Pf6N2E2_2185 0.75 +1.0 2,589,859 - Pf6N2E2_2185 0.75 -0.2 2,589,892 - Pf6N2E2_2185 0.79 +0.7 2,589,892 - Pf6N2E2_2185 0.79 +0.1 2,589,892 - Pf6N2E2_2185 0.79 -4.6 2,589,944 + Pf6N2E2_2185 0.84 +0.3 2,589,944 + Pf6N2E2_2185 0.84 -0.3 2,589,944 + Pf6N2E2_2185 0.84 +0.7 2,589,945 - Pf6N2E2_2185 0.85 -0.7 2,589,945 - Pf6N2E2_2185 0.85 -0.3 2,589,945 - Pf6N2E2_2185 0.85 -0.1 2,589,945 - Pf6N2E2_2185 0.85 +0.4 2,589,945 - Pf6N2E2_2185 0.85 +0.7 2,590,019 + -0.0 2,590,019 + +0.0 2,590,020 - +0.3 2,590,020 - -0.8 2,590,020 - +0.4 2,590,020 - -0.1 2,590,020 - -2.0 2,590,037 + +1.0 2,590,037 + +0.2 2,590,037 + -0.6 2,590,037 + +0.2 2,590,037 + -2.5 2,590,037 + -0.7 2,590,038 - -1.7 2,590,038 - +0.3 2,590,038 - +2.0 2,590,038 - -0.3 2,590,058 + +0.0 2,590,059 - +0.1 2,590,059 - -0.2 2,590,059 - -0.7 2,590,059 - -0.8 2,590,077 - +0.4 2,590,224 - -0.2 2,590,269 + +1.4 2,590,269 + +0.0 2,590,269 + +0.7 2,590,269 + +1.1 2,590,269 + +0.9 2,590,269 + -0.7 2,590,269 + -0.8 2,590,269 + -0.4 2,590,269 + +0.5 2,590,269 + +0.4 2,590,270 - -0.4 2,590,270 - -0.1 2,590,270 - +0.4 2,590,270 - -0.7 2,590,270 - +0.7 2,590,353 + -0.5 2,590,353 + -1.3 2,590,354 - -1.4 2,590,354 - -0.9 2,590,354 - -0.7 2,590,354 - -1.5 2,590,354 - -0.2 2,590,359 + Pf6N2E2_2186 0.10 -2.6 2,590,359 + Pf6N2E2_2186 0.10 +0.8 2,590,359 + Pf6N2E2_2186 0.10 -3.2 2,590,359 + Pf6N2E2_2186 0.10 -0.1 2,590,360 - Pf6N2E2_2186 0.10 -1.3 2,590,360 - Pf6N2E2_2186 0.10 -1.3 2,590,360 - Pf6N2E2_2186 0.10 -1.4 2,590,360 - Pf6N2E2_2186 0.10 -1.1 2,590,360 - Pf6N2E2_2186 0.10 -1.3 2,590,360 - Pf6N2E2_2186 0.10 -0.6 2,590,507 - Pf6N2E2_2186 0.22 -1.8 2,590,507 - Pf6N2E2_2186 0.22 -2.1 2,590,507 - Pf6N2E2_2186 0.22 -1.7 2,590,507 - Pf6N2E2_2186 0.22 -1.0 2,591,232 + Pf6N2E2_2186 0.81 -0.1 2,591,398 - -0.4 2,591,451 + -1.2 2,591,495 - -0.7 2,591,495 - -0.6 2,591,495 - +1.1 2,591,495 - +0.4 2,591,495 - +1.0 2,591,495 - +0.0 2,591,495 - -0.4 2,591,513 + -0.6 2,591,513 + +0.3 2,591,514 - +0.3 2,591,537 - -0.5 2,591,576 - +1.3 2,591,627 + +1.4 2,591,628 - -0.5 2,591,693 + +0.1 2,591,693 + +0.3 2,591,693 + +0.2 2,591,693 + -0.3 2,591,694 - -0.0 2,592,013 + Pf6N2E2_2187 0.40 -0.3 2,592,013 + Pf6N2E2_2187 0.40 +0.7 2,592,014 - Pf6N2E2_2187 0.40 +1.1 2,592,014 - Pf6N2E2_2187 0.40 +0.3 2,592,014 - Pf6N2E2_2187 0.40 +1.4 2,592,123 + Pf6N2E2_2187 0.52 +0.2 2,592,152 + Pf6N2E2_2187 0.55 +1.4 2,592,152 + Pf6N2E2_2187 0.55 +0.5 2,592,153 - Pf6N2E2_2187 0.55 -0.1 2,592,153 - Pf6N2E2_2187 0.55 -0.6 2,592,215 + Pf6N2E2_2187 0.62 +0.3 2,592,238 + Pf6N2E2_2187 0.64 -0.4 2,592,238 + Pf6N2E2_2187 0.64 -0.0 2,592,239 - Pf6N2E2_2187 0.64 +0.5 2,592,239 - Pf6N2E2_2187 0.64 -0.3 2,592,266 + Pf6N2E2_2187 0.67 +0.2 2,592,267 - Pf6N2E2_2187 0.67 +0.2 2,592,267 - Pf6N2E2_2187 0.67 +0.4 2,592,267 - Pf6N2E2_2187 0.67 +0.5 2,592,329 + Pf6N2E2_2187 0.74 +0.5 2,592,329 + Pf6N2E2_2187 0.74 +1.0 2,592,329 + Pf6N2E2_2187 0.74 +0.2 2,592,329 + Pf6N2E2_2187 0.74 -0.8 2,592,329 + Pf6N2E2_2187 0.74 -0.1 2,592,330 - Pf6N2E2_2187 0.74 +0.3 2,592,330 - Pf6N2E2_2187 0.74 -0.5
Or see this region's nucleotide sequence