Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2186

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2185 and Pf6N2E2_2186 are separated by 156 nucleotidesPf6N2E2_2186 and Pf6N2E2_2187 are separated by 177 nucleotides Pf6N2E2_2185 - carboxyphosphonoenolpyruvate phosphonomutase, putative, at 2,589,209 to 2,590,078 _2185 Pf6N2E2_2186 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 2,590,235 to 2,591,464 _2186 Pf6N2E2_2187 - Transcriptional regulator, LysR family, at 2,591,642 to 2,592,571 _2187 Position (kb) 2590 2591 2592Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2589.241 kb on + strandat 2589.275 kb on + strandat 2589.276 kb on - strandat 2589.339 kb on + strand, within Pf6N2E2_2185at 2589.339 kb on + strand, within Pf6N2E2_2185at 2589.339 kb on + strand, within Pf6N2E2_2185at 2589.339 kb on + strand, within Pf6N2E2_2185at 2589.340 kb on - strand, within Pf6N2E2_2185at 2589.486 kb on - strand, within Pf6N2E2_2185at 2589.737 kb on + strand, within Pf6N2E2_2185at 2589.738 kb on - strand, within Pf6N2E2_2185at 2589.738 kb on - strand, within Pf6N2E2_2185at 2589.738 kb on - strand, within Pf6N2E2_2185at 2589.738 kb on - strand, within Pf6N2E2_2185at 2589.738 kb on - strand, within Pf6N2E2_2185at 2589.738 kb on - strand, within Pf6N2E2_2185at 2589.842 kb on + strand, within Pf6N2E2_2185at 2589.842 kb on + strand, within Pf6N2E2_2185at 2589.842 kb on + strand, within Pf6N2E2_2185at 2589.842 kb on + strand, within Pf6N2E2_2185at 2589.842 kb on + strand, within Pf6N2E2_2185at 2589.843 kb on - strand, within Pf6N2E2_2185at 2589.858 kb on + strand, within Pf6N2E2_2185at 2589.859 kb on - strand, within Pf6N2E2_2185at 2589.892 kb on - strand, within Pf6N2E2_2185at 2589.892 kb on - strand, within Pf6N2E2_2185at 2589.892 kb on - strand, within Pf6N2E2_2185at 2589.944 kb on + strand, within Pf6N2E2_2185at 2589.944 kb on + strand, within Pf6N2E2_2185at 2589.944 kb on + strand, within Pf6N2E2_2185at 2589.945 kb on - strand, within Pf6N2E2_2185at 2589.945 kb on - strand, within Pf6N2E2_2185at 2589.945 kb on - strand, within Pf6N2E2_2185at 2589.945 kb on - strand, within Pf6N2E2_2185at 2589.945 kb on - strand, within Pf6N2E2_2185at 2590.019 kb on + strandat 2590.019 kb on + strandat 2590.020 kb on - strandat 2590.020 kb on - strandat 2590.020 kb on - strandat 2590.020 kb on - strandat 2590.020 kb on - strandat 2590.037 kb on + strandat 2590.037 kb on + strandat 2590.037 kb on + strandat 2590.037 kb on + strandat 2590.037 kb on + strandat 2590.037 kb on + strandat 2590.038 kb on - strandat 2590.038 kb on - strandat 2590.038 kb on - strandat 2590.038 kb on - strandat 2590.058 kb on + strandat 2590.059 kb on - strandat 2590.059 kb on - strandat 2590.059 kb on - strandat 2590.059 kb on - strandat 2590.077 kb on - strandat 2590.224 kb on - strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.269 kb on + strandat 2590.270 kb on - strandat 2590.270 kb on - strandat 2590.270 kb on - strandat 2590.270 kb on - strandat 2590.270 kb on - strandat 2590.353 kb on + strandat 2590.353 kb on + strandat 2590.354 kb on - strandat 2590.354 kb on - strandat 2590.354 kb on - strandat 2590.354 kb on - strandat 2590.354 kb on - strandat 2590.359 kb on + strand, within Pf6N2E2_2186at 2590.359 kb on + strand, within Pf6N2E2_2186at 2590.359 kb on + strand, within Pf6N2E2_2186at 2590.359 kb on + strand, within Pf6N2E2_2186at 2590.360 kb on - strand, within Pf6N2E2_2186at 2590.360 kb on - strand, within Pf6N2E2_2186at 2590.360 kb on - strand, within Pf6N2E2_2186at 2590.360 kb on - strand, within Pf6N2E2_2186at 2590.360 kb on - strand, within Pf6N2E2_2186at 2590.360 kb on - strand, within Pf6N2E2_2186at 2590.507 kb on - strand, within Pf6N2E2_2186at 2590.507 kb on - strand, within Pf6N2E2_2186at 2590.507 kb on - strand, within Pf6N2E2_2186at 2590.507 kb on - strand, within Pf6N2E2_2186at 2591.232 kb on + strand, within Pf6N2E2_2186at 2591.398 kb on - strandat 2591.451 kb on + strandat 2591.495 kb on - strandat 2591.495 kb on - strandat 2591.495 kb on - strandat 2591.495 kb on - strandat 2591.495 kb on - strandat 2591.495 kb on - strandat 2591.495 kb on - strandat 2591.513 kb on + strandat 2591.513 kb on + strandat 2591.514 kb on - strandat 2591.537 kb on - strandat 2591.576 kb on - strandat 2591.627 kb on + strandat 2591.628 kb on - strandat 2591.693 kb on + strandat 2591.693 kb on + strandat 2591.693 kb on + strandat 2591.693 kb on + strandat 2591.694 kb on - strandat 2592.013 kb on + strand, within Pf6N2E2_2187at 2592.013 kb on + strand, within Pf6N2E2_2187at 2592.014 kb on - strand, within Pf6N2E2_2187at 2592.014 kb on - strand, within Pf6N2E2_2187at 2592.014 kb on - strand, within Pf6N2E2_2187at 2592.123 kb on + strand, within Pf6N2E2_2187at 2592.152 kb on + strand, within Pf6N2E2_2187at 2592.152 kb on + strand, within Pf6N2E2_2187at 2592.153 kb on - strand, within Pf6N2E2_2187at 2592.153 kb on - strand, within Pf6N2E2_2187at 2592.215 kb on + strand, within Pf6N2E2_2187at 2592.238 kb on + strand, within Pf6N2E2_2187at 2592.238 kb on + strand, within Pf6N2E2_2187at 2592.239 kb on - strand, within Pf6N2E2_2187at 2592.239 kb on - strand, within Pf6N2E2_2187at 2592.266 kb on + strand, within Pf6N2E2_2187at 2592.267 kb on - strand, within Pf6N2E2_2187at 2592.267 kb on - strand, within Pf6N2E2_2187at 2592.267 kb on - strand, within Pf6N2E2_2187at 2592.329 kb on + strand, within Pf6N2E2_2187at 2592.329 kb on + strand, within Pf6N2E2_2187at 2592.329 kb on + strand, within Pf6N2E2_2187at 2592.329 kb on + strand, within Pf6N2E2_2187at 2592.329 kb on + strand, within Pf6N2E2_2187at 2592.330 kb on - strand, within Pf6N2E2_2187at 2592.330 kb on - strand, within Pf6N2E2_2187

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,589,241 + -0.4
2,589,275 + -1.5
2,589,276 - -0.1
2,589,339 + Pf6N2E2_2185 0.15 -0.8
2,589,339 + Pf6N2E2_2185 0.15 -0.7
2,589,339 + Pf6N2E2_2185 0.15 +0.5
2,589,339 + Pf6N2E2_2185 0.15 +1.2
2,589,340 - Pf6N2E2_2185 0.15 -0.2
2,589,486 - Pf6N2E2_2185 0.32 +0.3
2,589,737 + Pf6N2E2_2185 0.61 +0.4
2,589,738 - Pf6N2E2_2185 0.61 +0.2
2,589,738 - Pf6N2E2_2185 0.61 -0.1
2,589,738 - Pf6N2E2_2185 0.61 -0.2
2,589,738 - Pf6N2E2_2185 0.61 -0.1
2,589,738 - Pf6N2E2_2185 0.61 -0.6
2,589,738 - Pf6N2E2_2185 0.61 +0.6
2,589,842 + Pf6N2E2_2185 0.73 +0.1
2,589,842 + Pf6N2E2_2185 0.73 +1.0
2,589,842 + Pf6N2E2_2185 0.73 +0.1
2,589,842 + Pf6N2E2_2185 0.73 -1.7
2,589,842 + Pf6N2E2_2185 0.73 -0.7
2,589,843 - Pf6N2E2_2185 0.73 +0.9
2,589,858 + Pf6N2E2_2185 0.75 +1.0
2,589,859 - Pf6N2E2_2185 0.75 -0.2
2,589,892 - Pf6N2E2_2185 0.79 +0.7
2,589,892 - Pf6N2E2_2185 0.79 +0.1
2,589,892 - Pf6N2E2_2185 0.79 -4.6
2,589,944 + Pf6N2E2_2185 0.84 +0.3
2,589,944 + Pf6N2E2_2185 0.84 -0.3
2,589,944 + Pf6N2E2_2185 0.84 +0.7
2,589,945 - Pf6N2E2_2185 0.85 -0.7
2,589,945 - Pf6N2E2_2185 0.85 -0.3
2,589,945 - Pf6N2E2_2185 0.85 -0.1
2,589,945 - Pf6N2E2_2185 0.85 +0.4
2,589,945 - Pf6N2E2_2185 0.85 +0.7
2,590,019 + -0.0
2,590,019 + +0.0
2,590,020 - +0.3
2,590,020 - -0.8
2,590,020 - +0.4
2,590,020 - -0.1
2,590,020 - -2.0
2,590,037 + +1.0
2,590,037 + +0.2
2,590,037 + -0.6
2,590,037 + +0.2
2,590,037 + -2.5
2,590,037 + -0.7
2,590,038 - -1.7
2,590,038 - +0.3
2,590,038 - +2.0
2,590,038 - -0.3
2,590,058 + +0.0
2,590,059 - +0.1
2,590,059 - -0.2
2,590,059 - -0.7
2,590,059 - -0.8
2,590,077 - +0.4
2,590,224 - -0.2
2,590,269 + +1.4
2,590,269 + +0.0
2,590,269 + +0.7
2,590,269 + +1.1
2,590,269 + +0.9
2,590,269 + -0.7
2,590,269 + -0.8
2,590,269 + -0.4
2,590,269 + +0.5
2,590,269 + +0.4
2,590,270 - -0.4
2,590,270 - -0.1
2,590,270 - +0.4
2,590,270 - -0.7
2,590,270 - +0.7
2,590,353 + -0.5
2,590,353 + -1.3
2,590,354 - -1.4
2,590,354 - -0.9
2,590,354 - -0.7
2,590,354 - -1.5
2,590,354 - -0.2
2,590,359 + Pf6N2E2_2186 0.10 -2.6
2,590,359 + Pf6N2E2_2186 0.10 +0.8
2,590,359 + Pf6N2E2_2186 0.10 -3.2
2,590,359 + Pf6N2E2_2186 0.10 -0.1
2,590,360 - Pf6N2E2_2186 0.10 -1.3
2,590,360 - Pf6N2E2_2186 0.10 -1.3
2,590,360 - Pf6N2E2_2186 0.10 -1.4
2,590,360 - Pf6N2E2_2186 0.10 -1.1
2,590,360 - Pf6N2E2_2186 0.10 -1.3
2,590,360 - Pf6N2E2_2186 0.10 -0.6
2,590,507 - Pf6N2E2_2186 0.22 -1.8
2,590,507 - Pf6N2E2_2186 0.22 -2.1
2,590,507 - Pf6N2E2_2186 0.22 -1.7
2,590,507 - Pf6N2E2_2186 0.22 -1.0
2,591,232 + Pf6N2E2_2186 0.81 -0.1
2,591,398 - -0.4
2,591,451 + -1.2
2,591,495 - -0.7
2,591,495 - -0.6
2,591,495 - +1.1
2,591,495 - +0.4
2,591,495 - +1.0
2,591,495 - +0.0
2,591,495 - -0.4
2,591,513 + -0.6
2,591,513 + +0.3
2,591,514 - +0.3
2,591,537 - -0.5
2,591,576 - +1.3
2,591,627 + +1.4
2,591,628 - -0.5
2,591,693 + +0.1
2,591,693 + +0.3
2,591,693 + +0.2
2,591,693 + -0.3
2,591,694 - -0.0
2,592,013 + Pf6N2E2_2187 0.40 -0.3
2,592,013 + Pf6N2E2_2187 0.40 +0.7
2,592,014 - Pf6N2E2_2187 0.40 +1.1
2,592,014 - Pf6N2E2_2187 0.40 +0.3
2,592,014 - Pf6N2E2_2187 0.40 +1.4
2,592,123 + Pf6N2E2_2187 0.52 +0.2
2,592,152 + Pf6N2E2_2187 0.55 +1.4
2,592,152 + Pf6N2E2_2187 0.55 +0.5
2,592,153 - Pf6N2E2_2187 0.55 -0.1
2,592,153 - Pf6N2E2_2187 0.55 -0.6
2,592,215 + Pf6N2E2_2187 0.62 +0.3
2,592,238 + Pf6N2E2_2187 0.64 -0.4
2,592,238 + Pf6N2E2_2187 0.64 -0.0
2,592,239 - Pf6N2E2_2187 0.64 +0.5
2,592,239 - Pf6N2E2_2187 0.64 -0.3
2,592,266 + Pf6N2E2_2187 0.67 +0.2
2,592,267 - Pf6N2E2_2187 0.67 +0.2
2,592,267 - Pf6N2E2_2187 0.67 +0.4
2,592,267 - Pf6N2E2_2187 0.67 +0.5
2,592,329 + Pf6N2E2_2187 0.74 +0.5
2,592,329 + Pf6N2E2_2187 0.74 +1.0
2,592,329 + Pf6N2E2_2187 0.74 +0.2
2,592,329 + Pf6N2E2_2187 0.74 -0.8
2,592,329 + Pf6N2E2_2187 0.74 -0.1
2,592,330 - Pf6N2E2_2187 0.74 +0.3
2,592,330 - Pf6N2E2_2187 0.74 -0.5

Or see this region's nucleotide sequence