Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1979 and Pf6N2E2_1980 are separated by 204 nucleotides Pf6N2E2_1980 and Pf6N2E2_1981 are separated by 122 nucleotides Pf6N2E2_1981 and Pf6N2E2_1982 are separated by 270 nucleotides
Pf6N2E2_1979 - Cytosine-specific DNA methyltransferase (EC 2.1.1.37), at 2,345,021 to 2,346,277
_1979
Pf6N2E2_1980 - hypothetical protein, at 2,346,482 to 2,346,886
_1980
Pf6N2E2_1981 - FIG051360: Periplasmic protein TonB, links inner and outer membranes, at 2,347,009 to 2,347,491
_1981
Pf6N2E2_1982 - FIG146805: Plasmid related protein, at 2,347,762 to 2,347,932
_1982
Position (kb)
2347
2348 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2346.023 kb on + strand, within Pf6N2E2_1979 at 2346.023 kb on + strand, within Pf6N2E2_1979 at 2346.024 kb on - strand, within Pf6N2E2_1979 at 2346.024 kb on - strand, within Pf6N2E2_1979 at 2346.024 kb on - strand, within Pf6N2E2_1979 at 2346.024 kb on - strand, within Pf6N2E2_1979 at 2346.150 kb on + strand, within Pf6N2E2_1979 at 2346.150 kb on + strand, within Pf6N2E2_1979 at 2346.211 kb on + strand at 2346.237 kb on + strand at 2346.237 kb on + strand at 2346.237 kb on + strand at 2346.238 kb on - strand at 2346.319 kb on + strand at 2346.319 kb on + strand at 2346.319 kb on + strand at 2346.455 kb on + strand at 2346.527 kb on - strand, within Pf6N2E2_1980 at 2346.557 kb on - strand, within Pf6N2E2_1980 at 2346.559 kb on + strand, within Pf6N2E2_1980 at 2346.559 kb on + strand, within Pf6N2E2_1980 at 2346.560 kb on - strand, within Pf6N2E2_1980 at 2346.617 kb on + strand, within Pf6N2E2_1980 at 2346.634 kb on + strand, within Pf6N2E2_1980 at 2346.732 kb on + strand, within Pf6N2E2_1980 at 2346.735 kb on + strand, within Pf6N2E2_1980 at 2346.736 kb on - strand, within Pf6N2E2_1980 at 2346.736 kb on - strand, within Pf6N2E2_1980 at 2346.738 kb on + strand, within Pf6N2E2_1980 at 2346.738 kb on + strand, within Pf6N2E2_1980 at 2346.738 kb on + strand, within Pf6N2E2_1980 at 2346.738 kb on + strand, within Pf6N2E2_1980 at 2346.738 kb on + strand, within Pf6N2E2_1980 at 2346.739 kb on - strand, within Pf6N2E2_1980 at 2346.828 kb on + strand, within Pf6N2E2_1980 at 2346.850 kb on + strand at 2346.850 kb on + strand at 2346.872 kb on + strand at 2346.873 kb on - strand at 2346.884 kb on + strand at 2347.036 kb on + strand at 2347.066 kb on + strand, within Pf6N2E2_1981 at 2347.115 kb on + strand, within Pf6N2E2_1981 at 2347.115 kb on + strand, within Pf6N2E2_1981 at 2347.116 kb on - strand, within Pf6N2E2_1981 at 2347.205 kb on + strand, within Pf6N2E2_1981 at 2347.298 kb on - strand, within Pf6N2E2_1981 at 2347.392 kb on + strand, within Pf6N2E2_1981 at 2347.434 kb on + strand, within Pf6N2E2_1981 at 2347.435 kb on - strand, within Pf6N2E2_1981 at 2347.572 kb on + strand at 2347.572 kb on + strand at 2347.573 kb on - strand at 2347.731 kb on - strand at 2347.927 kb on + strand at 2347.927 kb on + strand at 2347.966 kb on - strand at 2347.966 kb on - strand at 2348.020 kb on + strand at 2348.032 kb on - strand at 2348.032 kb on - strand at 2348.032 kb on - strand at 2348.078 kb on + strand at 2348.100 kb on + strand at 2348.101 kb on - strand at 2348.112 kb on - strand at 2348.189 kb on + strand at 2348.189 kb on + strand at 2348.190 kb on - strand at 2348.233 kb on + strand at 2348.234 kb on - strand at 2348.234 kb on - strand at 2348.252 kb on - strand at 2348.371 kb on + strand at 2348.371 kb on + strand at 2348.372 kb on - strand at 2348.372 kb on - strand at 2348.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,346,023 + Pf6N2E2_1979 0.80 +0.9 2,346,023 + Pf6N2E2_1979 0.80 +0.1 2,346,024 - Pf6N2E2_1979 0.80 +1.8 2,346,024 - Pf6N2E2_1979 0.80 +0.4 2,346,024 - Pf6N2E2_1979 0.80 +0.3 2,346,024 - Pf6N2E2_1979 0.80 +0.8 2,346,150 + Pf6N2E2_1979 0.90 -0.3 2,346,150 + Pf6N2E2_1979 0.90 -0.4 2,346,211 + +0.3 2,346,237 + +0.7 2,346,237 + +0.6 2,346,237 + +0.3 2,346,238 - +0.2 2,346,319 + -0.6 2,346,319 + -0.0 2,346,319 + +0.1 2,346,455 + +0.6 2,346,527 - Pf6N2E2_1980 0.11 +1.1 2,346,557 - Pf6N2E2_1980 0.19 +0.3 2,346,559 + Pf6N2E2_1980 0.19 +0.5 2,346,559 + Pf6N2E2_1980 0.19 +0.0 2,346,560 - Pf6N2E2_1980 0.19 +0.0 2,346,617 + Pf6N2E2_1980 0.33 +0.9 2,346,634 + Pf6N2E2_1980 0.38 +0.3 2,346,732 + Pf6N2E2_1980 0.62 +0.9 2,346,735 + Pf6N2E2_1980 0.62 -0.5 2,346,736 - Pf6N2E2_1980 0.63 +1.1 2,346,736 - Pf6N2E2_1980 0.63 +0.4 2,346,738 + Pf6N2E2_1980 0.63 -0.2 2,346,738 + Pf6N2E2_1980 0.63 +0.0 2,346,738 + Pf6N2E2_1980 0.63 -1.0 2,346,738 + Pf6N2E2_1980 0.63 -0.5 2,346,738 + Pf6N2E2_1980 0.63 +1.4 2,346,739 - Pf6N2E2_1980 0.63 -1.2 2,346,828 + Pf6N2E2_1980 0.85 -3.7 2,346,850 + +1.5 2,346,850 + +1.4 2,346,872 + +0.2 2,346,873 - +0.7 2,346,884 + +0.3 2,347,036 + -2.5 2,347,066 + Pf6N2E2_1981 0.12 -1.0 2,347,115 + Pf6N2E2_1981 0.22 -2.1 2,347,115 + Pf6N2E2_1981 0.22 -1.7 2,347,116 - Pf6N2E2_1981 0.22 -1.1 2,347,205 + Pf6N2E2_1981 0.41 -2.3 2,347,298 - Pf6N2E2_1981 0.60 -0.3 2,347,392 + Pf6N2E2_1981 0.79 -2.7 2,347,434 + Pf6N2E2_1981 0.88 -2.4 2,347,435 - Pf6N2E2_1981 0.88 +0.1 2,347,572 + -3.1 2,347,572 + -1.0 2,347,573 - +0.1 2,347,731 - +0.1 2,347,927 + -0.3 2,347,927 + +0.3 2,347,966 - +0.4 2,347,966 - +0.1 2,348,020 + -1.5 2,348,032 - +0.9 2,348,032 - -0.9 2,348,032 - +0.4 2,348,078 + +0.3 2,348,100 + +1.2 2,348,101 - +0.7 2,348,112 - -0.2 2,348,189 + +0.7 2,348,189 + +0.7 2,348,190 - +1.4 2,348,233 + -1.1 2,348,234 - +0.2 2,348,234 - -1.0 2,348,252 - +0.1 2,348,371 + +1.3 2,348,371 + +0.7 2,348,372 - +0.2 2,348,372 - -0.5 2,348,372 - +0.2
Or see this region's nucleotide sequence