Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1191

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1190 and Pf6N2E2_1191 are separated by 147 nucleotidesPf6N2E2_1191 and Pf6N2E2_1192 are separated by 630 nucleotidesPf6N2E2_1192 and Pf6N2E2_1193 are separated by 135 nucleotides Pf6N2E2_1190 - Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase, at 1,393,302 to 1,394,303 _1190 Pf6N2E2_1191 - Thiaminase II (EC 3.5.99.2), at 1,394,451 to 1,395,161 _1191 Pf6N2E2_1192 - Transcriptional regulator, at 1,395,792 to 1,396,019 _1192 Pf6N2E2_1193 - Outer membrane porin, OprD family, at 1,396,155 to 1,396,385 _1193 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1393.468 kb on - strand, within Pf6N2E2_1190at 1393.468 kb on - strand, within Pf6N2E2_1190at 1393.486 kb on + strand, within Pf6N2E2_1190at 1393.501 kb on + strand, within Pf6N2E2_1190at 1393.501 kb on + strand, within Pf6N2E2_1190at 1393.502 kb on - strand, within Pf6N2E2_1190at 1393.502 kb on - strand, within Pf6N2E2_1190at 1393.579 kb on + strand, within Pf6N2E2_1190at 1393.579 kb on + strand, within Pf6N2E2_1190at 1393.647 kb on + strand, within Pf6N2E2_1190at 1393.666 kb on + strand, within Pf6N2E2_1190at 1393.667 kb on - strand, within Pf6N2E2_1190at 1393.667 kb on - strand, within Pf6N2E2_1190at 1393.690 kb on + strand, within Pf6N2E2_1190at 1393.691 kb on - strand, within Pf6N2E2_1190at 1393.691 kb on - strand, within Pf6N2E2_1190at 1393.828 kb on + strand, within Pf6N2E2_1190at 1393.835 kb on - strand, within Pf6N2E2_1190at 1393.844 kb on - strand, within Pf6N2E2_1190at 1393.959 kb on + strand, within Pf6N2E2_1190at 1393.960 kb on - strand, within Pf6N2E2_1190at 1394.077 kb on + strand, within Pf6N2E2_1190at 1394.080 kb on + strand, within Pf6N2E2_1190at 1394.081 kb on - strand, within Pf6N2E2_1190at 1394.086 kb on + strand, within Pf6N2E2_1190at 1394.137 kb on + strand, within Pf6N2E2_1190at 1394.150 kb on - strand, within Pf6N2E2_1190at 1394.150 kb on - strand, within Pf6N2E2_1190at 1394.368 kb on + strandat 1394.368 kb on + strandat 1394.369 kb on - strandat 1394.369 kb on - strandat 1394.441 kb on + strandat 1394.441 kb on + strandat 1394.508 kb on + strandat 1394.531 kb on + strand, within Pf6N2E2_1191at 1394.532 kb on - strand, within Pf6N2E2_1191at 1394.532 kb on - strand, within Pf6N2E2_1191at 1394.620 kb on + strand, within Pf6N2E2_1191at 1394.621 kb on - strand, within Pf6N2E2_1191at 1394.626 kb on + strand, within Pf6N2E2_1191at 1394.626 kb on + strand, within Pf6N2E2_1191at 1394.627 kb on - strand, within Pf6N2E2_1191at 1394.627 kb on - strand, within Pf6N2E2_1191at 1394.656 kb on + strand, within Pf6N2E2_1191at 1394.657 kb on - strand, within Pf6N2E2_1191at 1394.674 kb on + strand, within Pf6N2E2_1191at 1394.716 kb on + strand, within Pf6N2E2_1191at 1394.716 kb on + strand, within Pf6N2E2_1191at 1394.717 kb on - strand, within Pf6N2E2_1191at 1394.717 kb on - strand, within Pf6N2E2_1191at 1394.717 kb on - strand, within Pf6N2E2_1191at 1394.717 kb on - strand, within Pf6N2E2_1191at 1394.717 kb on - strand, within Pf6N2E2_1191at 1394.799 kb on - strand, within Pf6N2E2_1191at 1394.799 kb on - strand, within Pf6N2E2_1191at 1394.800 kb on + strand, within Pf6N2E2_1191at 1394.800 kb on + strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.801 kb on - strand, within Pf6N2E2_1191at 1394.847 kb on + strand, within Pf6N2E2_1191at 1394.848 kb on - strand, within Pf6N2E2_1191at 1394.848 kb on - strand, within Pf6N2E2_1191at 1394.982 kb on - strand, within Pf6N2E2_1191at 1394.982 kb on - strand, within Pf6N2E2_1191at 1394.989 kb on + strand, within Pf6N2E2_1191at 1394.990 kb on - strand, within Pf6N2E2_1191at 1394.990 kb on - strand, within Pf6N2E2_1191at 1394.998 kb on + strand, within Pf6N2E2_1191at 1395.056 kb on + strand, within Pf6N2E2_1191at 1395.057 kb on - strand, within Pf6N2E2_1191at 1395.057 kb on - strandat 1395.058 kb on + strand, within Pf6N2E2_1191at 1395.059 kb on - strand, within Pf6N2E2_1191at 1395.059 kb on - strand, within Pf6N2E2_1191at 1395.133 kb on + strandat 1395.161 kb on + strandat 1395.161 kb on + strandat 1395.161 kb on + strandat 1395.162 kb on - strandat 1395.162 kb on - strandat 1395.162 kb on - strandat 1395.175 kb on + strandat 1395.176 kb on - strandat 1395.185 kb on + strandat 1395.186 kb on - strandat 1395.186 kb on - strandat 1395.186 kb on - strandat 1395.837 kb on + strand, within Pf6N2E2_1192at 1395.837 kb on + strand, within Pf6N2E2_1192at 1395.838 kb on - strand, within Pf6N2E2_1192at 1395.838 kb on - strand, within Pf6N2E2_1192at 1395.906 kb on + strand, within Pf6N2E2_1192at 1395.906 kb on + strand, within Pf6N2E2_1192at 1395.906 kb on + strandat 1395.906 kb on + strand, within Pf6N2E2_1192at 1395.906 kb on + strand, within Pf6N2E2_1192at 1395.907 kb on - strand, within Pf6N2E2_1192at 1395.907 kb on - strand, within Pf6N2E2_1192at 1395.907 kb on - strand, within Pf6N2E2_1192at 1395.907 kb on - strand, within Pf6N2E2_1192at 1395.993 kb on + strand, within Pf6N2E2_1192at 1395.993 kb on + strand, within Pf6N2E2_1192at 1396.000 kb on + strandat 1396.000 kb on + strandat 1396.104 kb on + strandat 1396.104 kb on + strandat 1396.105 kb on - strandat 1396.105 kb on - strandat 1396.105 kb on - strandat 1396.111 kb on - strandat 1396.158 kb on + strandat 1396.158 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,393,468 - Pf6N2E2_1190 0.17 -1.5
1,393,468 - Pf6N2E2_1190 0.17 -4.1
1,393,486 + Pf6N2E2_1190 0.18 -3.1
1,393,501 + Pf6N2E2_1190 0.20 -3.8
1,393,501 + Pf6N2E2_1190 0.20 -3.5
1,393,502 - Pf6N2E2_1190 0.20 -3.2
1,393,502 - Pf6N2E2_1190 0.20 -2.2
1,393,579 + Pf6N2E2_1190 0.28 -2.9
1,393,579 + Pf6N2E2_1190 0.28 -3.7
1,393,647 + Pf6N2E2_1190 0.34 -2.8
1,393,666 + Pf6N2E2_1190 0.36 -3.2
1,393,667 - Pf6N2E2_1190 0.36 -3.6
1,393,667 - Pf6N2E2_1190 0.36 -4.9
1,393,690 + Pf6N2E2_1190 0.39 -4.4
1,393,691 - Pf6N2E2_1190 0.39 -3.7
1,393,691 - Pf6N2E2_1190 0.39 -2.5
1,393,828 + Pf6N2E2_1190 0.52 -3.8
1,393,835 - Pf6N2E2_1190 0.53 -4.5
1,393,844 - Pf6N2E2_1190 0.54 -3.2
1,393,959 + Pf6N2E2_1190 0.66 -2.2
1,393,960 - Pf6N2E2_1190 0.66 -3.5
1,394,077 + Pf6N2E2_1190 0.77 -2.4
1,394,080 + Pf6N2E2_1190 0.78 -4.4
1,394,081 - Pf6N2E2_1190 0.78 -2.8
1,394,086 + Pf6N2E2_1190 0.78 -4.7
1,394,137 + Pf6N2E2_1190 0.83 -1.2
1,394,150 - Pf6N2E2_1190 0.85 -3.4
1,394,150 - Pf6N2E2_1190 0.85 -3.8
1,394,368 + -3.4
1,394,368 + -3.2
1,394,369 - -3.1
1,394,369 - -4.4
1,394,441 + -1.2
1,394,441 + -3.5
1,394,508 + -3.2
1,394,531 + Pf6N2E2_1191 0.11 -4.1
1,394,532 - Pf6N2E2_1191 0.11 -4.8
1,394,532 - Pf6N2E2_1191 0.11 -2.8
1,394,620 + Pf6N2E2_1191 0.24 -4.4
1,394,621 - Pf6N2E2_1191 0.24 -4.3
1,394,626 + Pf6N2E2_1191 0.25 -3.5
1,394,626 + Pf6N2E2_1191 0.25 -3.4
1,394,627 - Pf6N2E2_1191 0.25 -0.9
1,394,627 - Pf6N2E2_1191 0.25 -2.4
1,394,656 + Pf6N2E2_1191 0.29 -3.4
1,394,657 - Pf6N2E2_1191 0.29 -3.1
1,394,674 + Pf6N2E2_1191 0.31 -0.9
1,394,716 + Pf6N2E2_1191 0.37 -2.8
1,394,716 + Pf6N2E2_1191 0.37 -3.7
1,394,717 - Pf6N2E2_1191 0.37 -2.5
1,394,717 - Pf6N2E2_1191 0.37 -4.6
1,394,717 - Pf6N2E2_1191 0.37 -3.2
1,394,717 - Pf6N2E2_1191 0.37 -3.0
1,394,717 - Pf6N2E2_1191 0.37 -3.2
1,394,799 - Pf6N2E2_1191 0.49 -4.4
1,394,799 - Pf6N2E2_1191 0.49 -3.4
1,394,800 + Pf6N2E2_1191 0.49 -3.2
1,394,800 + Pf6N2E2_1191 0.49 -2.5
1,394,801 - Pf6N2E2_1191 0.49 -2.8
1,394,801 - Pf6N2E2_1191 0.49 -4.2
1,394,801 - Pf6N2E2_1191 0.49 -0.3
1,394,801 - Pf6N2E2_1191 0.49 -3.5
1,394,801 - Pf6N2E2_1191 0.49 -3.4
1,394,801 - Pf6N2E2_1191 0.49 -2.2
1,394,801 - Pf6N2E2_1191 0.49 -2.5
1,394,801 - Pf6N2E2_1191 0.49 -3.0
1,394,801 - Pf6N2E2_1191 0.49 -4.2
1,394,847 + Pf6N2E2_1191 0.56 -3.4
1,394,848 - Pf6N2E2_1191 0.56 -3.4
1,394,848 - Pf6N2E2_1191 0.56 -4.1
1,394,982 - Pf6N2E2_1191 0.75 -3.1
1,394,982 - Pf6N2E2_1191 0.75 -3.9
1,394,989 + Pf6N2E2_1191 0.76 -3.6
1,394,990 - Pf6N2E2_1191 0.76 -4.7
1,394,990 - Pf6N2E2_1191 0.76 -2.8
1,394,998 + Pf6N2E2_1191 0.77 -4.5
1,395,056 + Pf6N2E2_1191 0.85 -4.0
1,395,057 - Pf6N2E2_1191 0.85 -4.3
1,395,057 - -2.5
1,395,058 + Pf6N2E2_1191 0.85 -4.0
1,395,059 - Pf6N2E2_1191 0.86 -3.3
1,395,059 - Pf6N2E2_1191 0.86 -3.4
1,395,133 + -2.0
1,395,161 + -3.7
1,395,161 + -3.2
1,395,161 + -2.9
1,395,162 - -3.2
1,395,162 - -2.2
1,395,162 - -2.8
1,395,175 + -3.0
1,395,176 - -1.2
1,395,185 + -1.5
1,395,186 - -4.7
1,395,186 - -3.0
1,395,186 - -2.8
1,395,837 + Pf6N2E2_1192 0.20 +2.5
1,395,837 + Pf6N2E2_1192 0.20 -0.5
1,395,838 - Pf6N2E2_1192 0.20 +1.2
1,395,838 - Pf6N2E2_1192 0.20 +0.1
1,395,906 + Pf6N2E2_1192 0.50 +0.8
1,395,906 + Pf6N2E2_1192 0.50 -1.4
1,395,906 + +1.0
1,395,906 + Pf6N2E2_1192 0.50 -0.3
1,395,906 + Pf6N2E2_1192 0.50 -0.3
1,395,907 - Pf6N2E2_1192 0.50 +0.2
1,395,907 - Pf6N2E2_1192 0.50 +1.3
1,395,907 - Pf6N2E2_1192 0.50 +0.3
1,395,907 - Pf6N2E2_1192 0.50 +0.5
1,395,993 + Pf6N2E2_1192 0.88 -0.4
1,395,993 + Pf6N2E2_1192 0.88 +0.4
1,396,000 + +1.5
1,396,000 + +0.7
1,396,104 + -1.3
1,396,104 + +1.5
1,396,105 - +0.4
1,396,105 - -0.0
1,396,105 - +0.4
1,396,111 - +0.2
1,396,158 + +0.7
1,396,158 + +1.0

Or see this region's nucleotide sequence