Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1188

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1187 and Pf6N2E2_1188 are separated by 9 nucleotidesPf6N2E2_1188 and Pf6N2E2_1189 overlap by 10 nucleotides Pf6N2E2_1187 - Probable nikkomycin biosynthesis protein, carboxylase, at 1,389,990 to 1,391,273 _1187 Pf6N2E2_1188 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 1,391,283 to 1,392,140 _1188 Pf6N2E2_1189 - Thioredoxin reductase (EC 1.8.1.9), at 1,392,131 to 1,393,300 _1189 Position (kb) 1391 1392 1393Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1390.655 kb on - strand, within Pf6N2E2_1187at 1390.805 kb on - strand, within Pf6N2E2_1187at 1390.805 kb on - strand, within Pf6N2E2_1187at 1390.831 kb on - strand, within Pf6N2E2_1187at 1390.932 kb on - strand, within Pf6N2E2_1187at 1390.941 kb on + strand, within Pf6N2E2_1187at 1390.941 kb on + strand, within Pf6N2E2_1187at 1390.942 kb on - strand, within Pf6N2E2_1187at 1391.004 kb on - strand, within Pf6N2E2_1187at 1391.018 kb on + strand, within Pf6N2E2_1187at 1391.018 kb on + strand, within Pf6N2E2_1187at 1391.019 kb on - strand, within Pf6N2E2_1187at 1391.019 kb on - strand, within Pf6N2E2_1187at 1391.135 kb on + strand, within Pf6N2E2_1187at 1391.135 kb on + strand, within Pf6N2E2_1187at 1391.171 kb on - strandat 1391.234 kb on + strandat 1391.239 kb on + strandat 1391.239 kb on + strandat 1391.273 kb on + strandat 1391.273 kb on + strandat 1391.274 kb on - strandat 1391.276 kb on + strandat 1391.276 kb on + strandat 1391.276 kb on + strandat 1391.276 kb on + strandat 1391.277 kb on - strandat 1391.277 kb on - strandat 1391.360 kb on + strandat 1391.496 kb on + strand, within Pf6N2E2_1188at 1391.524 kb on + strand, within Pf6N2E2_1188at 1391.525 kb on - strand, within Pf6N2E2_1188at 1391.525 kb on - strand, within Pf6N2E2_1188at 1391.558 kb on - strand, within Pf6N2E2_1188at 1391.803 kb on - strand, within Pf6N2E2_1188at 1391.863 kb on + strand, within Pf6N2E2_1188at 1392.004 kb on + strand, within Pf6N2E2_1188at 1392.004 kb on + strand, within Pf6N2E2_1188at 1392.005 kb on - strand, within Pf6N2E2_1188at 1392.005 kb on - strand, within Pf6N2E2_1188at 1392.043 kb on - strand, within Pf6N2E2_1188at 1392.281 kb on - strand, within Pf6N2E2_1189at 1392.281 kb on - strand, within Pf6N2E2_1189at 1392.534 kb on + strand, within Pf6N2E2_1189at 1392.535 kb on - strand, within Pf6N2E2_1189at 1392.551 kb on - strand, within Pf6N2E2_1189at 1392.551 kb on - strand, within Pf6N2E2_1189at 1392.683 kb on + strand, within Pf6N2E2_1189at 1392.684 kb on - strand, within Pf6N2E2_1189at 1392.831 kb on + strand, within Pf6N2E2_1189at 1393.047 kb on + strand, within Pf6N2E2_1189at 1393.048 kb on - strand, within Pf6N2E2_1189at 1393.056 kb on + strand, within Pf6N2E2_1189at 1393.057 kb on - strand, within Pf6N2E2_1189at 1393.110 kb on + strand, within Pf6N2E2_1189

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,390,655 - Pf6N2E2_1187 0.52 -4.5
1,390,805 - Pf6N2E2_1187 0.63 -2.2
1,390,805 - Pf6N2E2_1187 0.63 -4.3
1,390,831 - Pf6N2E2_1187 0.65 -2.8
1,390,932 - Pf6N2E2_1187 0.73 -1.8
1,390,941 + Pf6N2E2_1187 0.74 -3.7
1,390,941 + Pf6N2E2_1187 0.74 -2.8
1,390,942 - Pf6N2E2_1187 0.74 -1.3
1,391,004 - Pf6N2E2_1187 0.79 -4.0
1,391,018 + Pf6N2E2_1187 0.80 -4.3
1,391,018 + Pf6N2E2_1187 0.80 -2.7
1,391,019 - Pf6N2E2_1187 0.80 -5.4
1,391,019 - Pf6N2E2_1187 0.80 -0.9
1,391,135 + Pf6N2E2_1187 0.89 -4.7
1,391,135 + Pf6N2E2_1187 0.89 -4.2
1,391,171 - -2.5
1,391,234 + -4.3
1,391,239 + -4.5
1,391,239 + -4.5
1,391,273 + -4.3
1,391,273 + -3.5
1,391,274 - -4.7
1,391,276 + -2.5
1,391,276 + -2.5
1,391,276 + -4.2
1,391,276 + -5.4
1,391,277 - -3.2
1,391,277 - -4.2
1,391,360 + -2.8
1,391,496 + Pf6N2E2_1188 0.25 -3.8
1,391,524 + Pf6N2E2_1188 0.28 -3.0
1,391,525 - Pf6N2E2_1188 0.28 -3.2
1,391,525 - Pf6N2E2_1188 0.28 -3.9
1,391,558 - Pf6N2E2_1188 0.32 -2.2
1,391,803 - Pf6N2E2_1188 0.61 -2.5
1,391,863 + Pf6N2E2_1188 0.68 -2.2
1,392,004 + Pf6N2E2_1188 0.84 -3.4
1,392,004 + Pf6N2E2_1188 0.84 -3.4
1,392,005 - Pf6N2E2_1188 0.84 -3.7
1,392,005 - Pf6N2E2_1188 0.84 -3.5
1,392,043 - Pf6N2E2_1188 0.89 -2.9
1,392,281 - Pf6N2E2_1189 0.13 -3.7
1,392,281 - Pf6N2E2_1189 0.13 -4.7
1,392,534 + Pf6N2E2_1189 0.34 -3.9
1,392,535 - Pf6N2E2_1189 0.35 -3.3
1,392,551 - Pf6N2E2_1189 0.36 -3.8
1,392,551 - Pf6N2E2_1189 0.36 -4.3
1,392,683 + Pf6N2E2_1189 0.47 -2.5
1,392,684 - Pf6N2E2_1189 0.47 -3.4
1,392,831 + Pf6N2E2_1189 0.60 -3.5
1,393,047 + Pf6N2E2_1189 0.78 -2.8
1,393,048 - Pf6N2E2_1189 0.78 -1.2
1,393,056 + Pf6N2E2_1189 0.79 -2.5
1,393,057 - Pf6N2E2_1189 0.79 -1.8
1,393,110 + Pf6N2E2_1189 0.84 -4.5

Or see this region's nucleotide sequence