Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1187 and Pf6N2E2_1188 are separated by 9 nucleotides Pf6N2E2_1188 and Pf6N2E2_1189 overlap by 10 nucleotides
Pf6N2E2_1187 - Probable nikkomycin biosynthesis protein, carboxylase, at 1,389,990 to 1,391,273
_1187
Pf6N2E2_1188 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 1,391,283 to 1,392,140
_1188
Pf6N2E2_1189 - Thioredoxin reductase (EC 1.8.1.9), at 1,392,131 to 1,393,300
_1189
Position (kb)
1391
1392
1393 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1390.655 kb on - strand, within Pf6N2E2_1187 at 1390.805 kb on - strand, within Pf6N2E2_1187 at 1390.805 kb on - strand, within Pf6N2E2_1187 at 1390.831 kb on - strand, within Pf6N2E2_1187 at 1390.932 kb on - strand, within Pf6N2E2_1187 at 1390.941 kb on + strand, within Pf6N2E2_1187 at 1390.941 kb on + strand, within Pf6N2E2_1187 at 1390.942 kb on - strand, within Pf6N2E2_1187 at 1391.004 kb on - strand, within Pf6N2E2_1187 at 1391.018 kb on + strand, within Pf6N2E2_1187 at 1391.018 kb on + strand, within Pf6N2E2_1187 at 1391.019 kb on - strand, within Pf6N2E2_1187 at 1391.019 kb on - strand, within Pf6N2E2_1187 at 1391.135 kb on + strand, within Pf6N2E2_1187 at 1391.135 kb on + strand, within Pf6N2E2_1187 at 1391.171 kb on - strand at 1391.234 kb on + strand at 1391.239 kb on + strand at 1391.239 kb on + strand at 1391.273 kb on + strand at 1391.273 kb on + strand at 1391.274 kb on - strand at 1391.276 kb on + strand at 1391.276 kb on + strand at 1391.276 kb on + strand at 1391.276 kb on + strand at 1391.277 kb on - strand at 1391.277 kb on - strand at 1391.360 kb on + strand at 1391.496 kb on + strand, within Pf6N2E2_1188 at 1391.524 kb on + strand, within Pf6N2E2_1188 at 1391.525 kb on - strand, within Pf6N2E2_1188 at 1391.525 kb on - strand, within Pf6N2E2_1188 at 1391.558 kb on - strand, within Pf6N2E2_1188 at 1391.803 kb on - strand, within Pf6N2E2_1188 at 1391.863 kb on + strand, within Pf6N2E2_1188 at 1392.004 kb on + strand, within Pf6N2E2_1188 at 1392.004 kb on + strand, within Pf6N2E2_1188 at 1392.005 kb on - strand, within Pf6N2E2_1188 at 1392.005 kb on - strand, within Pf6N2E2_1188 at 1392.043 kb on - strand, within Pf6N2E2_1188 at 1392.281 kb on - strand, within Pf6N2E2_1189 at 1392.281 kb on - strand, within Pf6N2E2_1189 at 1392.534 kb on + strand, within Pf6N2E2_1189 at 1392.535 kb on - strand, within Pf6N2E2_1189 at 1392.551 kb on - strand, within Pf6N2E2_1189 at 1392.551 kb on - strand, within Pf6N2E2_1189 at 1392.683 kb on + strand, within Pf6N2E2_1189 at 1392.684 kb on - strand, within Pf6N2E2_1189 at 1392.831 kb on + strand, within Pf6N2E2_1189 at 1393.047 kb on + strand, within Pf6N2E2_1189 at 1393.048 kb on - strand, within Pf6N2E2_1189 at 1393.056 kb on + strand, within Pf6N2E2_1189 at 1393.057 kb on - strand, within Pf6N2E2_1189 at 1393.110 kb on + strand, within Pf6N2E2_1189
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,390,655 - Pf6N2E2_1187 0.52 -4.5 1,390,805 - Pf6N2E2_1187 0.63 -2.2 1,390,805 - Pf6N2E2_1187 0.63 -4.3 1,390,831 - Pf6N2E2_1187 0.65 -2.8 1,390,932 - Pf6N2E2_1187 0.73 -1.8 1,390,941 + Pf6N2E2_1187 0.74 -3.7 1,390,941 + Pf6N2E2_1187 0.74 -2.8 1,390,942 - Pf6N2E2_1187 0.74 -1.3 1,391,004 - Pf6N2E2_1187 0.79 -4.0 1,391,018 + Pf6N2E2_1187 0.80 -4.3 1,391,018 + Pf6N2E2_1187 0.80 -2.7 1,391,019 - Pf6N2E2_1187 0.80 -5.4 1,391,019 - Pf6N2E2_1187 0.80 -0.9 1,391,135 + Pf6N2E2_1187 0.89 -4.7 1,391,135 + Pf6N2E2_1187 0.89 -4.2 1,391,171 - -2.5 1,391,234 + -4.3 1,391,239 + -4.5 1,391,239 + -4.5 1,391,273 + -4.3 1,391,273 + -3.5 1,391,274 - -4.7 1,391,276 + -2.5 1,391,276 + -2.5 1,391,276 + -4.2 1,391,276 + -5.4 1,391,277 - -3.2 1,391,277 - -4.2 1,391,360 + -2.8 1,391,496 + Pf6N2E2_1188 0.25 -3.8 1,391,524 + Pf6N2E2_1188 0.28 -3.0 1,391,525 - Pf6N2E2_1188 0.28 -3.2 1,391,525 - Pf6N2E2_1188 0.28 -3.9 1,391,558 - Pf6N2E2_1188 0.32 -2.2 1,391,803 - Pf6N2E2_1188 0.61 -2.5 1,391,863 + Pf6N2E2_1188 0.68 -2.2 1,392,004 + Pf6N2E2_1188 0.84 -3.4 1,392,004 + Pf6N2E2_1188 0.84 -3.4 1,392,005 - Pf6N2E2_1188 0.84 -3.7 1,392,005 - Pf6N2E2_1188 0.84 -3.5 1,392,043 - Pf6N2E2_1188 0.89 -2.9 1,392,281 - Pf6N2E2_1189 0.13 -3.7 1,392,281 - Pf6N2E2_1189 0.13 -4.7 1,392,534 + Pf6N2E2_1189 0.34 -3.9 1,392,535 - Pf6N2E2_1189 0.35 -3.3 1,392,551 - Pf6N2E2_1189 0.36 -3.8 1,392,551 - Pf6N2E2_1189 0.36 -4.3 1,392,683 + Pf6N2E2_1189 0.47 -2.5 1,392,684 - Pf6N2E2_1189 0.47 -3.4 1,392,831 + Pf6N2E2_1189 0.60 -3.5 1,393,047 + Pf6N2E2_1189 0.78 -2.8 1,393,048 - Pf6N2E2_1189 0.78 -1.2 1,393,056 + Pf6N2E2_1189 0.79 -2.5 1,393,057 - Pf6N2E2_1189 0.79 -1.8 1,393,110 + Pf6N2E2_1189 0.84 -4.5
Or see this region's nucleotide sequence