Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1187

Experiment: L-Phenylalanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1186 and Pf6N2E2_1187 are separated by 46 nucleotidesPf6N2E2_1187 and Pf6N2E2_1188 are separated by 9 nucleotidesPf6N2E2_1188 and Pf6N2E2_1189 overlap by 10 nucleotides Pf6N2E2_1186 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,388,996 to 1,389,943 _1186 Pf6N2E2_1187 - Probable nikkomycin biosynthesis protein, carboxylase, at 1,389,990 to 1,391,273 _1187 Pf6N2E2_1188 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 1,391,283 to 1,392,140 _1188 Pf6N2E2_1189 - Thioredoxin reductase (EC 1.8.1.9), at 1,392,131 to 1,393,300 _1189 Position (kb) 1389 1390 1391 1392Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1389.119 kb on - strand, within Pf6N2E2_1186at 1389.423 kb on + strand, within Pf6N2E2_1186at 1389.423 kb on + strand, within Pf6N2E2_1186at 1389.424 kb on - strand, within Pf6N2E2_1186at 1389.520 kb on + strand, within Pf6N2E2_1186at 1389.642 kb on + strand, within Pf6N2E2_1186at 1389.643 kb on - strand, within Pf6N2E2_1186at 1389.784 kb on + strand, within Pf6N2E2_1186at 1389.785 kb on - strand, within Pf6N2E2_1186at 1389.785 kb on - strand, within Pf6N2E2_1186at 1389.824 kb on - strand, within Pf6N2E2_1186at 1389.824 kb on - strand, within Pf6N2E2_1186at 1389.824 kb on - strand, within Pf6N2E2_1186at 1389.824 kb on - strand, within Pf6N2E2_1186at 1389.903 kb on + strandat 1389.903 kb on + strandat 1389.930 kb on - strandat 1390.034 kb on - strandat 1390.066 kb on - strandat 1390.084 kb on + strandat 1390.084 kb on + strandat 1390.084 kb on + strandat 1390.085 kb on - strandat 1390.085 kb on - strandat 1390.085 kb on - strandat 1390.165 kb on + strand, within Pf6N2E2_1187at 1390.165 kb on + strand, within Pf6N2E2_1187at 1390.165 kb on + strand, within Pf6N2E2_1187at 1390.166 kb on - strand, within Pf6N2E2_1187at 1390.166 kb on - strand, within Pf6N2E2_1187at 1390.166 kb on - strand, within Pf6N2E2_1187at 1390.655 kb on - strand, within Pf6N2E2_1187at 1390.805 kb on - strand, within Pf6N2E2_1187at 1390.805 kb on - strand, within Pf6N2E2_1187at 1390.831 kb on - strand, within Pf6N2E2_1187at 1390.932 kb on - strand, within Pf6N2E2_1187at 1390.941 kb on + strand, within Pf6N2E2_1187at 1390.941 kb on + strand, within Pf6N2E2_1187at 1390.942 kb on - strand, within Pf6N2E2_1187at 1391.004 kb on - strand, within Pf6N2E2_1187at 1391.018 kb on + strand, within Pf6N2E2_1187at 1391.018 kb on + strand, within Pf6N2E2_1187at 1391.019 kb on - strand, within Pf6N2E2_1187at 1391.019 kb on - strand, within Pf6N2E2_1187at 1391.135 kb on + strand, within Pf6N2E2_1187at 1391.135 kb on + strand, within Pf6N2E2_1187at 1391.171 kb on - strandat 1391.234 kb on + strandat 1391.239 kb on + strandat 1391.239 kb on + strandat 1391.273 kb on + strandat 1391.273 kb on + strandat 1391.274 kb on - strandat 1391.276 kb on + strandat 1391.276 kb on + strandat 1391.276 kb on + strandat 1391.276 kb on + strandat 1391.277 kb on - strandat 1391.277 kb on - strandat 1391.360 kb on + strandat 1391.496 kb on + strand, within Pf6N2E2_1188at 1391.524 kb on + strand, within Pf6N2E2_1188at 1391.525 kb on - strand, within Pf6N2E2_1188at 1391.525 kb on - strand, within Pf6N2E2_1188at 1391.558 kb on - strand, within Pf6N2E2_1188at 1391.803 kb on - strand, within Pf6N2E2_1188at 1391.863 kb on + strand, within Pf6N2E2_1188at 1392.004 kb on + strand, within Pf6N2E2_1188at 1392.004 kb on + strand, within Pf6N2E2_1188at 1392.005 kb on - strand, within Pf6N2E2_1188at 1392.005 kb on - strand, within Pf6N2E2_1188at 1392.043 kb on - strand, within Pf6N2E2_1188

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
remove
1,389,119 - Pf6N2E2_1186 0.13 -2.2
1,389,423 + Pf6N2E2_1186 0.45 -3.5
1,389,423 + Pf6N2E2_1186 0.45 -2.2
1,389,424 - Pf6N2E2_1186 0.45 -2.5
1,389,520 + Pf6N2E2_1186 0.55 -3.8
1,389,642 + Pf6N2E2_1186 0.68 -3.5
1,389,643 - Pf6N2E2_1186 0.68 -4.0
1,389,784 + Pf6N2E2_1186 0.83 -2.8
1,389,785 - Pf6N2E2_1186 0.83 -4.8
1,389,785 - Pf6N2E2_1186 0.83 -4.2
1,389,824 - Pf6N2E2_1186 0.87 -4.7
1,389,824 - Pf6N2E2_1186 0.87 -1.2
1,389,824 - Pf6N2E2_1186 0.87 -2.8
1,389,824 - Pf6N2E2_1186 0.87 -4.3
1,389,903 + -3.2
1,389,903 + -3.4
1,389,930 - -2.5
1,390,034 - -4.2
1,390,066 - -3.0
1,390,084 + -4.2
1,390,084 + -3.9
1,390,084 + -2.4
1,390,085 - -2.2
1,390,085 - -2.0
1,390,085 - -3.5
1,390,165 + Pf6N2E2_1187 0.14 -3.5
1,390,165 + Pf6N2E2_1187 0.14 -4.1
1,390,165 + Pf6N2E2_1187 0.14 -3.1
1,390,166 - Pf6N2E2_1187 0.14 -4.7
1,390,166 - Pf6N2E2_1187 0.14 -3.8
1,390,166 - Pf6N2E2_1187 0.14 -3.7
1,390,655 - Pf6N2E2_1187 0.52 -4.5
1,390,805 - Pf6N2E2_1187 0.63 -2.2
1,390,805 - Pf6N2E2_1187 0.63 -4.3
1,390,831 - Pf6N2E2_1187 0.65 -2.8
1,390,932 - Pf6N2E2_1187 0.73 -1.8
1,390,941 + Pf6N2E2_1187 0.74 -3.7
1,390,941 + Pf6N2E2_1187 0.74 -2.8
1,390,942 - Pf6N2E2_1187 0.74 -1.3
1,391,004 - Pf6N2E2_1187 0.79 -4.0
1,391,018 + Pf6N2E2_1187 0.80 -4.3
1,391,018 + Pf6N2E2_1187 0.80 -2.7
1,391,019 - Pf6N2E2_1187 0.80 -5.4
1,391,019 - Pf6N2E2_1187 0.80 -0.9
1,391,135 + Pf6N2E2_1187 0.89 -4.7
1,391,135 + Pf6N2E2_1187 0.89 -4.2
1,391,171 - -2.5
1,391,234 + -4.3
1,391,239 + -4.5
1,391,239 + -4.5
1,391,273 + -4.3
1,391,273 + -3.5
1,391,274 - -4.7
1,391,276 + -2.5
1,391,276 + -2.5
1,391,276 + -4.2
1,391,276 + -5.4
1,391,277 - -3.2
1,391,277 - -4.2
1,391,360 + -2.8
1,391,496 + Pf6N2E2_1188 0.25 -3.8
1,391,524 + Pf6N2E2_1188 0.28 -3.0
1,391,525 - Pf6N2E2_1188 0.28 -3.2
1,391,525 - Pf6N2E2_1188 0.28 -3.9
1,391,558 - Pf6N2E2_1188 0.32 -2.2
1,391,803 - Pf6N2E2_1188 0.61 -2.5
1,391,863 + Pf6N2E2_1188 0.68 -2.2
1,392,004 + Pf6N2E2_1188 0.84 -3.4
1,392,004 + Pf6N2E2_1188 0.84 -3.4
1,392,005 - Pf6N2E2_1188 0.84 -3.7
1,392,005 - Pf6N2E2_1188 0.84 -3.5
1,392,043 - Pf6N2E2_1188 0.89 -2.9

Or see this region's nucleotide sequence