Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1184 and Pf6N2E2_1185 are separated by 11 nucleotides Pf6N2E2_1185 and Pf6N2E2_1186 are separated by 23 nucleotides
Pf6N2E2_1184 - L-Proline/Glycine betaine transporter ProP, at 1,386,415 to 1,387,719
_1184
Pf6N2E2_1185 - Acetylornithine deacetylase (EC 3.5.1.16), at 1,387,731 to 1,388,972
_1185
Pf6N2E2_1186 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,388,996 to 1,389,943
_1186
Position (kb)
1387
1388
1389 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1386.764 kb on - strand, within Pf6N2E2_1184 at 1386.832 kb on - strand, within Pf6N2E2_1184 at 1386.938 kb on + strand, within Pf6N2E2_1184 at 1386.938 kb on + strand, within Pf6N2E2_1184 at 1386.939 kb on - strand, within Pf6N2E2_1184 at 1386.939 kb on - strand, within Pf6N2E2_1184 at 1387.033 kb on - strand, within Pf6N2E2_1184 at 1387.059 kb on + strand, within Pf6N2E2_1184 at 1387.154 kb on + strand, within Pf6N2E2_1184 at 1387.155 kb on - strand, within Pf6N2E2_1184 at 1387.232 kb on - strand, within Pf6N2E2_1184 at 1387.313 kb on + strand, within Pf6N2E2_1184 at 1387.313 kb on + strand, within Pf6N2E2_1184 at 1387.360 kb on + strand, within Pf6N2E2_1184 at 1387.361 kb on - strand, within Pf6N2E2_1184 at 1387.410 kb on - strand, within Pf6N2E2_1184 at 1387.410 kb on - strand at 1387.828 kb on + strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1388.085 kb on - strand, within Pf6N2E2_1185 at 1388.103 kb on + strand, within Pf6N2E2_1185 at 1388.104 kb on - strand, within Pf6N2E2_1185 at 1388.515 kb on + strand, within Pf6N2E2_1185 at 1388.515 kb on + strand, within Pf6N2E2_1185 at 1388.516 kb on - strand, within Pf6N2E2_1185 at 1388.516 kb on - strand, within Pf6N2E2_1185 at 1388.620 kb on + strand, within Pf6N2E2_1185 at 1388.621 kb on - strand, within Pf6N2E2_1185 at 1388.621 kb on - strand, within Pf6N2E2_1185 at 1388.641 kb on + strand, within Pf6N2E2_1185 at 1388.642 kb on - strand, within Pf6N2E2_1185 at 1388.697 kb on - strand, within Pf6N2E2_1185 at 1389.119 kb on - strand, within Pf6N2E2_1186 at 1389.423 kb on + strand, within Pf6N2E2_1186 at 1389.423 kb on + strand, within Pf6N2E2_1186 at 1389.424 kb on - strand, within Pf6N2E2_1186 at 1389.520 kb on + strand, within Pf6N2E2_1186 at 1389.642 kb on + strand, within Pf6N2E2_1186 at 1389.643 kb on - strand, within Pf6N2E2_1186 at 1389.784 kb on + strand, within Pf6N2E2_1186 at 1389.785 kb on - strand, within Pf6N2E2_1186 at 1389.785 kb on - strand, within Pf6N2E2_1186 at 1389.824 kb on - strand, within Pf6N2E2_1186 at 1389.824 kb on - strand, within Pf6N2E2_1186 at 1389.824 kb on - strand, within Pf6N2E2_1186 at 1389.824 kb on - strand, within Pf6N2E2_1186 at 1389.903 kb on + strand at 1389.903 kb on + strand at 1389.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,386,764 - Pf6N2E2_1184 0.27 -0.7 1,386,832 - Pf6N2E2_1184 0.32 +0.9 1,386,938 + Pf6N2E2_1184 0.40 -0.6 1,386,938 + Pf6N2E2_1184 0.40 +0.0 1,386,939 - Pf6N2E2_1184 0.40 +1.4 1,386,939 - Pf6N2E2_1184 0.40 +0.3 1,387,033 - Pf6N2E2_1184 0.47 -0.6 1,387,059 + Pf6N2E2_1184 0.49 -0.2 1,387,154 + Pf6N2E2_1184 0.57 +0.6 1,387,155 - Pf6N2E2_1184 0.57 +0.0 1,387,232 - Pf6N2E2_1184 0.63 +0.1 1,387,313 + Pf6N2E2_1184 0.69 +0.9 1,387,313 + Pf6N2E2_1184 0.69 +0.6 1,387,360 + Pf6N2E2_1184 0.72 +0.2 1,387,361 - Pf6N2E2_1184 0.72 +1.7 1,387,410 - Pf6N2E2_1184 0.76 -0.3 1,387,410 - -1.2 1,387,828 + -0.7 1,387,829 - +1.7 1,387,829 - -0.8 1,387,829 - +0.8 1,387,829 - +0.6 1,387,829 - +0.6 1,387,829 - +1.1 1,388,085 - Pf6N2E2_1185 0.29 +0.9 1,388,103 + Pf6N2E2_1185 0.30 +0.6 1,388,104 - Pf6N2E2_1185 0.30 +0.5 1,388,515 + Pf6N2E2_1185 0.63 +0.8 1,388,515 + Pf6N2E2_1185 0.63 +1.0 1,388,516 - Pf6N2E2_1185 0.63 -0.2 1,388,516 - Pf6N2E2_1185 0.63 -0.4 1,388,620 + Pf6N2E2_1185 0.72 +0.4 1,388,621 - Pf6N2E2_1185 0.72 +1.1 1,388,621 - Pf6N2E2_1185 0.72 +1.1 1,388,641 + Pf6N2E2_1185 0.73 +1.2 1,388,642 - Pf6N2E2_1185 0.73 +0.7 1,388,697 - Pf6N2E2_1185 0.78 +0.6 1,389,119 - Pf6N2E2_1186 0.13 -2.2 1,389,423 + Pf6N2E2_1186 0.45 -3.5 1,389,423 + Pf6N2E2_1186 0.45 -2.2 1,389,424 - Pf6N2E2_1186 0.45 -2.5 1,389,520 + Pf6N2E2_1186 0.55 -3.8 1,389,642 + Pf6N2E2_1186 0.68 -3.5 1,389,643 - Pf6N2E2_1186 0.68 -4.0 1,389,784 + Pf6N2E2_1186 0.83 -2.8 1,389,785 - Pf6N2E2_1186 0.83 -4.8 1,389,785 - Pf6N2E2_1186 0.83 -4.2 1,389,824 - Pf6N2E2_1186 0.87 -4.7 1,389,824 - Pf6N2E2_1186 0.87 -1.2 1,389,824 - Pf6N2E2_1186 0.87 -2.8 1,389,824 - Pf6N2E2_1186 0.87 -4.3 1,389,903 + -3.2 1,389,903 + -3.4 1,389,930 - -2.5
Or see this region's nucleotide sequence