Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4899

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4898 and Pf6N2E2_4899 overlap by 11 nucleotidesPf6N2E2_4899 and Pf6N2E2_4900 are separated by 129 nucleotides Pf6N2E2_4898 - Biotin carboxylase (EC 6.3.4.14), at 5,650,818 to 5,651,921 _4898 Pf6N2E2_4899 - Prolyl oligopeptidase family protein, at 5,651,911 to 5,652,669 _4899 Pf6N2E2_4900 - Inner membrane protein YbhQ, at 5,652,799 to 5,653,800 _4900 Position (kb) 5651 5652 5653Strain fitness (log2 ratio) -2 -1 0 1 2at 5650.942 kb on - strand, within Pf6N2E2_4898at 5650.981 kb on - strand, within Pf6N2E2_4898at 5650.981 kb on - strand, within Pf6N2E2_4898at 5650.981 kb on - strand, within Pf6N2E2_4898at 5650.981 kb on - strand, within Pf6N2E2_4898at 5651.065 kb on - strand, within Pf6N2E2_4898at 5651.065 kb on - strand, within Pf6N2E2_4898at 5651.065 kb on - strand, within Pf6N2E2_4898at 5651.065 kb on - strand, within Pf6N2E2_4898at 5651.065 kb on - strand, within Pf6N2E2_4898at 5651.118 kb on - strand, within Pf6N2E2_4898at 5651.241 kb on + strand, within Pf6N2E2_4898at 5651.241 kb on + strand, within Pf6N2E2_4898at 5651.241 kb on + strand, within Pf6N2E2_4898at 5651.242 kb on - strand, within Pf6N2E2_4898at 5651.242 kb on - strand, within Pf6N2E2_4898at 5651.448 kb on + strand, within Pf6N2E2_4898at 5651.448 kb on + strand, within Pf6N2E2_4898at 5651.449 kb on - strand, within Pf6N2E2_4898at 5651.449 kb on - strand, within Pf6N2E2_4898at 5651.449 kb on - strand, within Pf6N2E2_4898at 5651.496 kb on + strand, within Pf6N2E2_4898at 5651.496 kb on + strand, within Pf6N2E2_4898at 5651.496 kb on + strand, within Pf6N2E2_4898at 5651.497 kb on - strand, within Pf6N2E2_4898at 5651.518 kb on + strand, within Pf6N2E2_4898at 5651.518 kb on + strand, within Pf6N2E2_4898at 5651.518 kb on + strand, within Pf6N2E2_4898at 5651.518 kb on + strand, within Pf6N2E2_4898at 5651.519 kb on - strand, within Pf6N2E2_4898at 5651.521 kb on + strand, within Pf6N2E2_4898at 5651.521 kb on + strand, within Pf6N2E2_4898at 5651.521 kb on + strand, within Pf6N2E2_4898at 5651.522 kb on - strand, within Pf6N2E2_4898at 5651.522 kb on - strand, within Pf6N2E2_4898at 5651.532 kb on + strand, within Pf6N2E2_4898at 5651.533 kb on - strand, within Pf6N2E2_4898at 5651.533 kb on - strand, within Pf6N2E2_4898at 5651.534 kb on + strand, within Pf6N2E2_4898at 5651.534 kb on + strand, within Pf6N2E2_4898at 5651.535 kb on - strand, within Pf6N2E2_4898at 5651.622 kb on + strand, within Pf6N2E2_4898at 5651.653 kb on - strand, within Pf6N2E2_4898at 5651.653 kb on - strand, within Pf6N2E2_4898at 5651.814 kb on + strandat 5651.814 kb on + strandat 5651.815 kb on - strandat 5651.892 kb on + strandat 5651.892 kb on + strandat 5651.892 kb on + strandat 5651.892 kb on + strandat 5651.893 kb on - strandat 5651.893 kb on - strandat 5651.893 kb on - strandat 5651.893 kb on - strandat 5651.896 kb on + strandat 5651.897 kb on - strandat 5651.910 kb on + strandat 5651.910 kb on + strandat 5651.911 kb on - strandat 5651.911 kb on - strandat 5651.911 kb on - strandat 5651.911 kb on - strandat 5651.919 kb on + strandat 5651.920 kb on - strandat 5652.178 kb on + strand, within Pf6N2E2_4899at 5652.179 kb on - strand, within Pf6N2E2_4899at 5652.211 kb on - strand, within Pf6N2E2_4899at 5652.241 kb on + strand, within Pf6N2E2_4899at 5652.241 kb on + strand, within Pf6N2E2_4899at 5652.241 kb on + strand, within Pf6N2E2_4899at 5652.241 kb on + strand, within Pf6N2E2_4899at 5652.241 kb on + strand, within Pf6N2E2_4899at 5652.242 kb on - strand, within Pf6N2E2_4899at 5652.242 kb on - strand, within Pf6N2E2_4899at 5652.242 kb on - strand, within Pf6N2E2_4899at 5652.242 kb on - strand, within Pf6N2E2_4899at 5652.242 kb on - strand, within Pf6N2E2_4899at 5652.242 kb on - strand, within Pf6N2E2_4899at 5652.250 kb on + strand, within Pf6N2E2_4899at 5652.316 kb on + strand, within Pf6N2E2_4899at 5652.316 kb on + strand, within Pf6N2E2_4899at 5652.317 kb on - strand, within Pf6N2E2_4899at 5652.317 kb on - strand, within Pf6N2E2_4899at 5652.317 kb on - strand, within Pf6N2E2_4899at 5652.377 kb on - strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.475 kb on + strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.476 kb on - strand, within Pf6N2E2_4899at 5652.596 kb on - strandat 5652.596 kb on - strandat 5652.723 kb on + strandat 5652.724 kb on - strandat 5652.735 kb on + strandat 5652.736 kb on - strandat 5652.736 kb on - strandat 5652.736 kb on - strandat 5652.736 kb on - strandat 5652.736 kb on - strandat 5652.736 kb on - strandat 5652.854 kb on + strandat 5652.854 kb on + strandat 5652.855 kb on - strandat 5652.855 kb on - strandat 5652.855 kb on - strandat 5652.890 kb on + strandat 5652.890 kb on + strandat 5652.891 kb on - strandat 5652.891 kb on - strandat 5652.891 kb on - strandat 5653.053 kb on - strand, within Pf6N2E2_4900at 5653.337 kb on + strand, within Pf6N2E2_4900at 5653.337 kb on + strand, within Pf6N2E2_4900at 5653.338 kb on - strand, within Pf6N2E2_4900at 5653.338 kb on - strand, within Pf6N2E2_4900at 5653.413 kb on - strand, within Pf6N2E2_4900at 5653.413 kb on - strand, within Pf6N2E2_4900at 5653.441 kb on + strand, within Pf6N2E2_4900at 5653.473 kb on - strand, within Pf6N2E2_4900at 5653.526 kb on + strand, within Pf6N2E2_4900at 5653.526 kb on + strand, within Pf6N2E2_4900at 5653.526 kb on + strand, within Pf6N2E2_4900at 5653.526 kb on + strand, within Pf6N2E2_4900at 5653.526 kb on + strand, within Pf6N2E2_4900at 5653.526 kb on + strand, within Pf6N2E2_4900at 5653.526 kb on + strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.527 kb on - strand, within Pf6N2E2_4900at 5653.556 kb on + strand, within Pf6N2E2_4900at 5653.556 kb on + strand, within Pf6N2E2_4900at 5653.556 kb on + strand, within Pf6N2E2_4900at 5653.556 kb on + strand, within Pf6N2E2_4900at 5653.556 kb on + strand, within Pf6N2E2_4900at 5653.556 kb on + strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900at 5653.557 kb on - strand, within Pf6N2E2_4900

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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5,650,942 - Pf6N2E2_4898 0.11 +0.2
5,650,981 - Pf6N2E2_4898 0.15 +0.2
5,650,981 - Pf6N2E2_4898 0.15 +0.9
5,650,981 - Pf6N2E2_4898 0.15 -0.5
5,650,981 - Pf6N2E2_4898 0.15 +0.1
5,651,065 - Pf6N2E2_4898 0.22 +0.8
5,651,065 - Pf6N2E2_4898 0.22 +0.2
5,651,065 - Pf6N2E2_4898 0.22 +0.2
5,651,065 - Pf6N2E2_4898 0.22 -1.1
5,651,065 - Pf6N2E2_4898 0.22 -0.3
5,651,118 - Pf6N2E2_4898 0.27 +0.1
5,651,241 + Pf6N2E2_4898 0.38 +0.2
5,651,241 + Pf6N2E2_4898 0.38 -1.0
5,651,241 + Pf6N2E2_4898 0.38 -0.7
5,651,242 - Pf6N2E2_4898 0.38 -0.2
5,651,242 - Pf6N2E2_4898 0.38 -1.6
5,651,448 + Pf6N2E2_4898 0.57 -0.8
5,651,448 + Pf6N2E2_4898 0.57 -0.0
5,651,449 - Pf6N2E2_4898 0.57 +0.5
5,651,449 - Pf6N2E2_4898 0.57 -0.4
5,651,449 - Pf6N2E2_4898 0.57 +0.5
5,651,496 + Pf6N2E2_4898 0.61 +2.1
5,651,496 + Pf6N2E2_4898 0.61 +1.1
5,651,496 + Pf6N2E2_4898 0.61 +1.0
5,651,497 - Pf6N2E2_4898 0.62 +0.1
5,651,518 + Pf6N2E2_4898 0.63 +0.2
5,651,518 + Pf6N2E2_4898 0.63 +0.4
5,651,518 + Pf6N2E2_4898 0.63 +0.3
5,651,518 + Pf6N2E2_4898 0.63 +0.5
5,651,519 - Pf6N2E2_4898 0.63 -1.9
5,651,521 + Pf6N2E2_4898 0.64 +0.6
5,651,521 + Pf6N2E2_4898 0.64 -0.4
5,651,521 + Pf6N2E2_4898 0.64 +0.9
5,651,522 - Pf6N2E2_4898 0.64 -0.8
5,651,522 - Pf6N2E2_4898 0.64 +0.7
5,651,532 + Pf6N2E2_4898 0.65 +0.2
5,651,533 - Pf6N2E2_4898 0.65 +0.8
5,651,533 - Pf6N2E2_4898 0.65 +0.1
5,651,534 + Pf6N2E2_4898 0.65 -0.3
5,651,534 + Pf6N2E2_4898 0.65 -0.3
5,651,535 - Pf6N2E2_4898 0.65 +0.4
5,651,622 + Pf6N2E2_4898 0.73 -1.5
5,651,653 - Pf6N2E2_4898 0.76 -1.2
5,651,653 - Pf6N2E2_4898 0.76 +1.2
5,651,814 + -0.1
5,651,814 + -2.0
5,651,815 - +1.0
5,651,892 + -0.2
5,651,892 + +0.1
5,651,892 + -1.0
5,651,892 + -0.2
5,651,893 - +0.7
5,651,893 - +0.1
5,651,893 - -1.1
5,651,893 - +0.1
5,651,896 + +0.7
5,651,897 - -1.9
5,651,910 + -0.0
5,651,910 + -0.5
5,651,911 - -0.6
5,651,911 - -1.2
5,651,911 - -0.7
5,651,911 - +1.3
5,651,919 + +0.5
5,651,920 - +0.1
5,652,178 + Pf6N2E2_4899 0.35 +1.8
5,652,179 - Pf6N2E2_4899 0.35 +0.3
5,652,211 - Pf6N2E2_4899 0.40 -0.1
5,652,241 + Pf6N2E2_4899 0.43 +2.4
5,652,241 + Pf6N2E2_4899 0.43 +0.6
5,652,241 + Pf6N2E2_4899 0.43 +1.3
5,652,241 + Pf6N2E2_4899 0.43 -2.5
5,652,241 + Pf6N2E2_4899 0.43 +0.5
5,652,242 - Pf6N2E2_4899 0.44 -0.2
5,652,242 - Pf6N2E2_4899 0.44 +0.3
5,652,242 - Pf6N2E2_4899 0.44 +0.5
5,652,242 - Pf6N2E2_4899 0.44 +1.0
5,652,242 - Pf6N2E2_4899 0.44 +0.1
5,652,242 - Pf6N2E2_4899 0.44 +1.4
5,652,250 + Pf6N2E2_4899 0.45 +0.2
5,652,316 + Pf6N2E2_4899 0.53 -0.1
5,652,316 + Pf6N2E2_4899 0.53 -0.1
5,652,317 - Pf6N2E2_4899 0.53 -0.7
5,652,317 - Pf6N2E2_4899 0.53 +2.3
5,652,317 - Pf6N2E2_4899 0.53 +0.7
5,652,377 - Pf6N2E2_4899 0.61 -0.8
5,652,475 + Pf6N2E2_4899 0.74 +1.1
5,652,475 + Pf6N2E2_4899 0.74 -0.1
5,652,475 + Pf6N2E2_4899 0.74 +0.4
5,652,475 + Pf6N2E2_4899 0.74 -0.2
5,652,475 + Pf6N2E2_4899 0.74 -0.2
5,652,475 + Pf6N2E2_4899 0.74 +0.2
5,652,475 + Pf6N2E2_4899 0.74 -0.0
5,652,475 + Pf6N2E2_4899 0.74 +0.4
5,652,476 - Pf6N2E2_4899 0.74 +0.5
5,652,476 - Pf6N2E2_4899 0.74 -0.9
5,652,476 - Pf6N2E2_4899 0.74 -2.0
5,652,476 - Pf6N2E2_4899 0.74 +0.8
5,652,476 - Pf6N2E2_4899 0.74 +0.2
5,652,476 - Pf6N2E2_4899 0.74 +1.0
5,652,476 - Pf6N2E2_4899 0.74 +0.0
5,652,476 - Pf6N2E2_4899 0.74 -0.0
5,652,476 - Pf6N2E2_4899 0.74 +1.5
5,652,476 - Pf6N2E2_4899 0.74 +0.7
5,652,476 - Pf6N2E2_4899 0.74 +1.3
5,652,476 - Pf6N2E2_4899 0.74 +0.9
5,652,596 - -1.0
5,652,596 - +0.1
5,652,723 + -2.3
5,652,724 - +0.2
5,652,735 + -0.4
5,652,736 - +1.0
5,652,736 - +0.4
5,652,736 - -0.2
5,652,736 - +0.1
5,652,736 - +0.2
5,652,736 - -0.5
5,652,854 + -2.1
5,652,854 + -0.0
5,652,855 - -0.3
5,652,855 - +0.2
5,652,855 - +0.9
5,652,890 + +0.1
5,652,890 + +0.0
5,652,891 - +0.3
5,652,891 - +0.5
5,652,891 - -0.2
5,653,053 - Pf6N2E2_4900 0.25 +0.9
5,653,337 + Pf6N2E2_4900 0.54 +0.2
5,653,337 + Pf6N2E2_4900 0.54 +0.4
5,653,338 - Pf6N2E2_4900 0.54 -0.1
5,653,338 - Pf6N2E2_4900 0.54 -0.9
5,653,413 - Pf6N2E2_4900 0.61 -1.2
5,653,413 - Pf6N2E2_4900 0.61 -1.3
5,653,441 + Pf6N2E2_4900 0.64 +1.0
5,653,473 - Pf6N2E2_4900 0.67 -0.5
5,653,526 + Pf6N2E2_4900 0.73 -0.2
5,653,526 + Pf6N2E2_4900 0.73 +0.5
5,653,526 + Pf6N2E2_4900 0.73 +0.2
5,653,526 + Pf6N2E2_4900 0.73 -0.0
5,653,526 + Pf6N2E2_4900 0.73 +0.2
5,653,526 + Pf6N2E2_4900 0.73 -0.3
5,653,526 + Pf6N2E2_4900 0.73 +0.0
5,653,527 - Pf6N2E2_4900 0.73 +0.1
5,653,527 - Pf6N2E2_4900 0.73 -0.3
5,653,527 - Pf6N2E2_4900 0.73 +1.0
5,653,527 - Pf6N2E2_4900 0.73 +0.0
5,653,527 - Pf6N2E2_4900 0.73 -1.8
5,653,527 - Pf6N2E2_4900 0.73 -0.7
5,653,527 - Pf6N2E2_4900 0.73 +0.5
5,653,527 - Pf6N2E2_4900 0.73 +0.6
5,653,556 + Pf6N2E2_4900 0.76 +0.0
5,653,556 + Pf6N2E2_4900 0.76 -0.3
5,653,556 + Pf6N2E2_4900 0.76 -1.3
5,653,556 + Pf6N2E2_4900 0.76 -0.1
5,653,556 + Pf6N2E2_4900 0.76 +1.1
5,653,556 + Pf6N2E2_4900 0.76 -0.1
5,653,557 - Pf6N2E2_4900 0.76 +1.3
5,653,557 - Pf6N2E2_4900 0.76 +0.5
5,653,557 - Pf6N2E2_4900 0.76 +0.2
5,653,557 - Pf6N2E2_4900 0.76 +0.2
5,653,557 - Pf6N2E2_4900 0.76 +1.0
5,653,557 - Pf6N2E2_4900 0.76 -0.3
5,653,557 - Pf6N2E2_4900 0.76 -0.0
5,653,557 - Pf6N2E2_4900 0.76 -0.3
5,653,557 - Pf6N2E2_4900 0.76 +0.9
5,653,557 - Pf6N2E2_4900 0.76 -1.4
5,653,557 - Pf6N2E2_4900 0.76 +1.1

Or see this region's nucleotide sequence