Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2057

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2054 and Pf6N2E2_2055 are separated by 78 nucleotidesPf6N2E2_2055 and Pf6N2E2_2056 overlap by 11 nucleotidesPf6N2E2_2056 and Pf6N2E2_2057 are separated by 66 nucleotidesPf6N2E2_2057 and Pf6N2E2_2058 are separated by 53 nucleotidesPf6N2E2_2058 and Pf6N2E2_2059 are separated by 53 nucleotides Pf6N2E2_2054 - hypothetical protein, at 2,444,933 to 2,445,274 _2054 Pf6N2E2_2055 - StbE replicon stabilization toxin, at 2,445,353 to 2,445,634 _2055 Pf6N2E2_2056 - RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE), at 2,445,624 to 2,445,872 _2056 Pf6N2E2_2057 - Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes, at 2,445,939 to 2,447,585 _2057 Pf6N2E2_2058 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 2,447,639 to 2,448,250 _2058 Pf6N2E2_2059 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 2,448,304 to 2,449,308 _2059 Position (kb) 2445 2446 2447 2448Strain fitness (log2 ratio) -2 -1 0 1 2at 2444.946 kb on + strandat 2444.947 kb on - strandat 2444.947 kb on - strandat 2444.947 kb on - strandat 2444.976 kb on + strand, within Pf6N2E2_2054at 2444.976 kb on + strand, within Pf6N2E2_2054at 2444.976 kb on + strand, within Pf6N2E2_2054at 2444.977 kb on - strand, within Pf6N2E2_2054at 2444.977 kb on - strand, within Pf6N2E2_2054at 2444.977 kb on - strand, within Pf6N2E2_2054at 2445.004 kb on - strand, within Pf6N2E2_2054at 2445.004 kb on - strand, within Pf6N2E2_2054at 2445.245 kb on + strandat 2445.245 kb on + strandat 2445.246 kb on - strandat 2445.246 kb on - strandat 2445.303 kb on - strandat 2445.303 kb on - strandat 2445.308 kb on - strandat 2445.376 kb on - strandat 2445.434 kb on + strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.482 kb on - strand, within Pf6N2E2_2055at 2445.627 kb on + strandat 2445.627 kb on + strandat 2445.627 kb on + strandat 2445.628 kb on - strandat 2445.628 kb on - strandat 2445.991 kb on + strandat 2445.994 kb on + strandat 2445.994 kb on + strandat 2445.995 kb on - strandat 2445.995 kb on - strandat 2445.995 kb on - strandat 2445.995 kb on - strandat 2445.995 kb on - strandat 2445.995 kb on - strandat 2446.064 kb on - strandat 2446.075 kb on + strandat 2446.084 kb on + strandat 2446.085 kb on - strandat 2446.085 kb on - strandat 2446.085 kb on - strandat 2446.085 kb on - strandat 2446.147 kb on + strand, within Pf6N2E2_2057at 2446.147 kb on + strand, within Pf6N2E2_2057at 2446.148 kb on - strand, within Pf6N2E2_2057at 2446.733 kb on + strand, within Pf6N2E2_2057at 2446.733 kb on + strand, within Pf6N2E2_2057at 2446.910 kb on - strand, within Pf6N2E2_2057at 2446.979 kb on - strand, within Pf6N2E2_2057at 2446.979 kb on - strand, within Pf6N2E2_2057at 2446.984 kb on + strand, within Pf6N2E2_2057at 2446.984 kb on + strand, within Pf6N2E2_2057at 2446.984 kb on + strand, within Pf6N2E2_2057at 2446.984 kb on + strand, within Pf6N2E2_2057at 2446.984 kb on + strand, within Pf6N2E2_2057at 2446.984 kb on + strand, within Pf6N2E2_2057at 2446.984 kb on + strand, within Pf6N2E2_2057at 2446.985 kb on - strand, within Pf6N2E2_2057at 2446.985 kb on - strand, within Pf6N2E2_2057at 2446.985 kb on - strand, within Pf6N2E2_2057at 2446.985 kb on - strand, within Pf6N2E2_2057at 2447.187 kb on + strandat 2447.188 kb on - strand, within Pf6N2E2_2057at 2447.188 kb on - strand, within Pf6N2E2_2057at 2447.188 kb on - strand, within Pf6N2E2_2057at 2447.275 kb on + strand, within Pf6N2E2_2057at 2447.275 kb on + strand, within Pf6N2E2_2057at 2447.276 kb on - strand, within Pf6N2E2_2057at 2447.276 kb on - strand, within Pf6N2E2_2057at 2447.323 kb on + strand, within Pf6N2E2_2057at 2447.323 kb on + strand, within Pf6N2E2_2057at 2447.323 kb on + strand, within Pf6N2E2_2057at 2447.517 kb on + strandat 2447.517 kb on + strandat 2447.537 kb on - strandat 2447.577 kb on + strandat 2447.616 kb on + strandat 2447.616 kb on + strandat 2447.617 kb on - strandat 2447.617 kb on - strandat 2447.617 kb on - strandat 2447.617 kb on - strandat 2447.635 kb on + strandat 2447.635 kb on + strandat 2447.635 kb on + strandat 2447.636 kb on - strandat 2447.636 kb on - strandat 2447.662 kb on + strandat 2447.663 kb on - strandat 2447.663 kb on - strandat 2447.671 kb on - strandat 2448.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,444,946 + -0.1
2,444,947 - +2.1
2,444,947 - -1.5
2,444,947 - +1.5
2,444,976 + Pf6N2E2_2054 0.13 -0.9
2,444,976 + Pf6N2E2_2054 0.13 -1.4
2,444,976 + Pf6N2E2_2054 0.13 +0.6
2,444,977 - Pf6N2E2_2054 0.13 +0.6
2,444,977 - Pf6N2E2_2054 0.13 -0.0
2,444,977 - Pf6N2E2_2054 0.13 +1.0
2,445,004 - Pf6N2E2_2054 0.21 -0.4
2,445,004 - Pf6N2E2_2054 0.21 +0.8
2,445,245 + +0.3
2,445,245 + +0.1
2,445,246 - +0.8
2,445,246 - -0.6
2,445,303 - -0.5
2,445,303 - -0.1
2,445,308 - +0.4
2,445,376 - -0.0
2,445,434 + Pf6N2E2_2055 0.29 +1.5
2,445,435 - Pf6N2E2_2055 0.29 -0.5
2,445,435 - Pf6N2E2_2055 0.29 +0.3
2,445,435 - Pf6N2E2_2055 0.29 +0.1
2,445,435 - Pf6N2E2_2055 0.29 +0.6
2,445,482 - Pf6N2E2_2055 0.46 -1.1
2,445,627 + +0.5
2,445,627 + +1.9
2,445,627 + +1.1
2,445,628 - +0.4
2,445,628 - -0.0
2,445,991 + +1.6
2,445,994 + +0.6
2,445,994 + +2.2
2,445,995 - +1.6
2,445,995 - +0.5
2,445,995 - -0.1
2,445,995 - +1.0
2,445,995 - +1.6
2,445,995 - +0.8
2,446,064 - +1.8
2,446,075 + +0.6
2,446,084 + +0.5
2,446,085 - +1.6
2,446,085 - +0.4
2,446,085 - +1.3
2,446,085 - +1.8
2,446,147 + Pf6N2E2_2057 0.13 +0.3
2,446,147 + Pf6N2E2_2057 0.13 -2.0
2,446,148 - Pf6N2E2_2057 0.13 +0.2
2,446,733 + Pf6N2E2_2057 0.48 +1.8
2,446,733 + Pf6N2E2_2057 0.48 +1.8
2,446,910 - Pf6N2E2_2057 0.59 +1.3
2,446,979 - Pf6N2E2_2057 0.63 -0.2
2,446,979 - Pf6N2E2_2057 0.63 +0.1
2,446,984 + Pf6N2E2_2057 0.63 +1.3
2,446,984 + Pf6N2E2_2057 0.63 -1.1
2,446,984 + Pf6N2E2_2057 0.63 +0.6
2,446,984 + Pf6N2E2_2057 0.63 +0.5
2,446,984 + Pf6N2E2_2057 0.63 +2.5
2,446,984 + Pf6N2E2_2057 0.63 +0.2
2,446,984 + Pf6N2E2_2057 0.63 +1.4
2,446,985 - Pf6N2E2_2057 0.64 +0.5
2,446,985 - Pf6N2E2_2057 0.64 +2.6
2,446,985 - Pf6N2E2_2057 0.64 +1.2
2,446,985 - Pf6N2E2_2057 0.64 +0.5
2,447,187 + +2.2
2,447,188 - Pf6N2E2_2057 0.76 +1.2
2,447,188 - Pf6N2E2_2057 0.76 +0.7
2,447,188 - Pf6N2E2_2057 0.76 +1.5
2,447,275 + Pf6N2E2_2057 0.81 -1.6
2,447,275 + Pf6N2E2_2057 0.81 +0.8
2,447,276 - Pf6N2E2_2057 0.81 +0.2
2,447,276 - Pf6N2E2_2057 0.81 +1.4
2,447,323 + Pf6N2E2_2057 0.84 +1.3
2,447,323 + Pf6N2E2_2057 0.84 +0.9
2,447,323 + Pf6N2E2_2057 0.84 +1.0
2,447,517 + +1.8
2,447,517 + +0.8
2,447,537 - +0.2
2,447,577 + -0.4
2,447,616 + -2.2
2,447,616 + +1.0
2,447,617 - +0.2
2,447,617 - +0.1
2,447,617 - -1.1
2,447,617 - -2.1
2,447,635 + +0.5
2,447,635 + +1.1
2,447,635 + +0.7
2,447,636 - +0.4
2,447,636 - -2.5
2,447,662 + +1.0
2,447,663 - -0.4
2,447,663 - -0.7
2,447,671 - +0.8
2,448,306 - -1.3

Or see this region's nucleotide sequence