Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5686

Experiment: L-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (N)
6,499,294	+		Pf6N2E2_5685	0.14	+0.6
6,499,294	+		Pf6N2E2_5685	0.14	+0.6
6,499,294	+		Pf6N2E2_5685	0.14	+1.1
6,499,295	-		Pf6N2E2_5685	0.14	+0.0
6,499,406	+		Pf6N2E2_5685	0.30	+0.0
6,499,406	+		Pf6N2E2_5685	0.30	-0.5
6,499,406	+		Pf6N2E2_5685	0.30	+0.9
6,499,407	-		Pf6N2E2_5685	0.30	+0.8
6,499,446	-		Pf6N2E2_5685	0.36	+0.5
6,499,526	+		Pf6N2E2_5685	0.47	+0.2
6,499,526	+		Pf6N2E2_5685	0.47	+1.7
6,499,526	+		Pf6N2E2_5685	0.47	-0.2
6,499,526	+		Pf6N2E2_5685	0.47	+0.2
6,499,526	+		Pf6N2E2_5685	0.47	+0.0
6,499,526	+		Pf6N2E2_5685	0.47	-1.1
6,499,527	-		Pf6N2E2_5685	0.47	+0.5
6,499,527	-		Pf6N2E2_5685	0.47	+0.2
6,499,527	-		Pf6N2E2_5685	0.47	+0.4
6,499,527	-		Pf6N2E2_5685	0.47	-0.9
6,499,527	-		Pf6N2E2_5685	0.47	+0.1
6,499,527	-		Pf6N2E2_5685	0.47	+0.1
6,499,604	-		Pf6N2E2_5685	0.58	+1.0
6,499,604	-		Pf6N2E2_5685	0.58	-0.4
6,499,604	-		Pf6N2E2_5685	0.58	-1.2
6,499,730	+		Pf6N2E2_5685	0.77	+0.3
6,499,778	+		Pf6N2E2_5685	0.84	+0.6
6,499,778	+		Pf6N2E2_5685	0.84	-0.4
6,499,778	+		Pf6N2E2_5685	0.84	+1.5
6,499,778	+		Pf6N2E2_5685	0.84	+0.6
6,499,779	-		Pf6N2E2_5685	0.84	+0.8
6,499,779	-		Pf6N2E2_5685	0.84	-1.1
6,499,880	+				+0.8
6,499,880	+				-0.3
6,499,880	+				+0.1
6,499,880	+				+0.2
6,499,881	-				+0.8
6,499,881	-				-0.3
6,499,881	-				+0.3
6,499,903	+				-0.4
6,499,907	+				+0.8
6,499,907	+				+0.3
6,499,907	+				-0.3
6,499,907	+				+0.1
6,499,907	+				+1.1
6,499,907	+				-0.2
6,499,961	+				+2.3
6,499,961	+				+0.2
6,499,961	+				+0.6
6,499,961	+				+0.5
6,499,961	+				-0.4
6,499,961	+				+0.0
6,499,962	-				-1.0
6,499,962	-				-1.0
6,499,982	-				-0.6
6,499,982	-				-0.6
6,500,001	+				+0.6
6,500,001	+				-0.1
6,500,001	+				+1.0
6,500,002	-				+0.6
6,500,002	-				+3.9
6,500,035	+				-1.2
6,500,035	+				+0.0
6,500,035	+				-1.2
6,500,035	+				+1.1
6,500,035	+				-0.2
6,500,035	+				+0.3
6,500,035	+				-0.5
6,500,035	+				+0.1
6,500,035	+				+1.1
6,500,035	+				+0.9
6,500,036	-				+2.0
6,500,036	-				+1.0
6,500,036	-				-1.4
6,500,036	-				-0.4
6,500,036	-				-0.5
6,500,151	+				+0.4
6,500,152	-				-2.1
6,500,418	-		Pf6N2E2_5686	0.27	-0.1
6,500,418	-		Pf6N2E2_5686	0.27	-0.7
6,500,600	+		Pf6N2E2_5686	0.41	+0.6
6,500,600	+		Pf6N2E2_5686	0.41	+0.1
6,500,600	+		Pf6N2E2_5686	0.41	-0.2
6,500,600	+		Pf6N2E2_5686	0.41	+1.2
6,500,600	+		Pf6N2E2_5686	0.41	+0.2
6,500,600	+		Pf6N2E2_5686	0.41	+1.0
6,500,600	+		Pf6N2E2_5686	0.41	-1.0
6,500,601	-		Pf6N2E2_5686	0.41	+0.1
6,500,601	-		Pf6N2E2_5686	0.41	-1.4
6,500,635	+		Pf6N2E2_5686	0.43	-0.2
6,500,635	+		Pf6N2E2_5686	0.43	-0.8
6,500,659	-		Pf6N2E2_5686	0.45	-1.6
6,500,659	-		Pf6N2E2_5686	0.45	-0.3
6,500,854	+		Pf6N2E2_5686	0.60	-0.3
6,501,229	+		Pf6N2E2_5686	0.88	-0.2
6,501,229	+		Pf6N2E2_5686	0.88	+0.6
6,501,229	+		Pf6N2E2_5686	0.88	-1.6
6,501,229	+		Pf6N2E2_5686	0.88	+0.3
6,501,229	+		Pf6N2E2_5686	0.88	-0.9
6,501,230	-		Pf6N2E2_5686	0.88	-0.4
6,501,230	-		Pf6N2E2_5686	0.88	+0.2
6,501,230	-		Pf6N2E2_5686	0.88	-0.7
6,501,230	-		Pf6N2E2_5686	0.88	+1.2
6,501,230	-		Pf6N2E2_5686	0.88	+0.2
6,501,230	-		Pf6N2E2_5686	0.88	+1.0
6,501,262	+				+2.6
6,501,263	-				+0.3
6,501,308	+				-0.3
6,501,309	-				+0.2
6,501,309	-				+1.6
6,501,309	-				+0.2
6,501,435	-				+0.1
6,501,498	+				-1.3
6,501,499	-				+0.5
6,501,499	-				+1.1
6,501,542	+				+0.1
6,501,542	+				-0.6
6,501,543	-				-0.5
6,501,543	-				-0.1
6,501,543	-				+0.3
6,501,543	-				+0.5
6,501,546	+				-1.1
6,501,546	+				+0.9
6,501,546	+				+0.1
6,501,546	+				+0.4
6,501,547	-				+1.5
6,501,547	-				+0.4
6,501,547	-				+0.0
6,501,547	-				+0.7
6,501,547	-				+0.4
6,501,615	+		Pf6N2E2_5687	0.11	-0.1
6,501,616	-		Pf6N2E2_5687	0.11	+1.0
6,501,685	-		Pf6N2E2_5687	0.16	+0.1
6,501,798	+		Pf6N2E2_5687	0.24	+1.4
6,501,799	-		Pf6N2E2_5687	0.24	+1.6
6,501,799	-		Pf6N2E2_5687	0.24	+0.0
6,501,799	-		Pf6N2E2_5687	0.24	-0.6
6,501,867	+		Pf6N2E2_5687	0.29	-2.6
6,501,867	+		Pf6N2E2_5687	0.29	+0.7
6,501,867	+		Pf6N2E2_5687	0.29	-0.3
6,501,868	-		Pf6N2E2_5687	0.29	-0.6
6,501,868	-		Pf6N2E2_5687	0.29	-0.4
6,501,869	+		Pf6N2E2_5687	0.30	+0.2
6,501,869	+		Pf6N2E2_5687	0.30	+0.1
6,501,869	+		Pf6N2E2_5687	0.30	+0.1
6,501,869	+		Pf6N2E2_5687	0.30	+0.9
6,501,869	+		Pf6N2E2_5687	0.30	-2.6
6,501,869	+		Pf6N2E2_5687	0.30	+1.0
6,501,869	+		Pf6N2E2_5687	0.30	-0.5
6,501,869	+		Pf6N2E2_5687	0.30	+0.0
6,501,870	-		Pf6N2E2_5687	0.30	+2.0
6,501,870	-		Pf6N2E2_5687	0.30	+0.3
6,501,882	+		Pf6N2E2_5687	0.30	+0.5
6,502,079	+		Pf6N2E2_5687	0.45	+0.9
6,502,079	+		Pf6N2E2_5687	0.45	+0.6
6,502,116	+		Pf6N2E2_5687	0.48	+0.7
6,502,117	-		Pf6N2E2_5687	0.48	-0.2
6,502,117	-		Pf6N2E2_5687	0.48	-0.4
6,502,134	+		Pf6N2E2_5687	0.49	+0.3
6,502,134	+		Pf6N2E2_5687	0.49	-0.3
6,502,135	-		Pf6N2E2_5687	0.49	+0.0
6,502,135	-		Pf6N2E2_5687	0.49	-1.6
6,502,135	-		Pf6N2E2_5687	0.49	+0.5
6,502,135	-		Pf6N2E2_5687	0.49	+0.1
6,502,135	-		Pf6N2E2_5687	0.49	-1.3
6,502,135	-		Pf6N2E2_5687	0.49	+1.1
6,502,135	-		Pf6N2E2_5687	0.49	-1.6