Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4403

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4402 and Pf6N2E2_4403 are separated by 235 nucleotidesPf6N2E2_4403 and Pf6N2E2_4404 are separated by 0 nucleotides Pf6N2E2_4402 - Methyl-accepting chemotaxis protein, at 5,133,009 to 5,134,985 _4402 Pf6N2E2_4403 - FIG00963784: hypothetical protein, at 5,135,221 to 5,136,435 _4403 Pf6N2E2_4404 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 5,136,436 to 5,137,929 _4404 Position (kb) 5135 5136 5137Strain fitness (log2 ratio) -2 -1 0 1 2at 5134.224 kb on + strand, within Pf6N2E2_4402at 5134.224 kb on + strand, within Pf6N2E2_4402at 5134.224 kb on + strand, within Pf6N2E2_4402at 5134.225 kb on - strand, within Pf6N2E2_4402at 5134.225 kb on - strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.631 kb on + strand, within Pf6N2E2_4402at 5134.658 kb on + strand, within Pf6N2E2_4402at 5134.658 kb on + strand, within Pf6N2E2_4402at 5134.659 kb on - strand, within Pf6N2E2_4402at 5135.156 kb on + strandat 5135.290 kb on + strandat 5135.290 kb on + strandat 5135.290 kb on + strandat 5135.290 kb on + strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.305 kb on - strandat 5135.694 kb on + strand, within Pf6N2E2_4403at 5135.694 kb on + strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.887 kb on + strand, within Pf6N2E2_4403at 5135.888 kb on - strand, within Pf6N2E2_4403at 5135.899 kb on + strand, within Pf6N2E2_4403at 5135.900 kb on - strand, within Pf6N2E2_4403at 5136.037 kb on + strand, within Pf6N2E2_4403at 5136.037 kb on + strand, within Pf6N2E2_4403at 5136.038 kb on - strand, within Pf6N2E2_4403at 5136.038 kb on - strand, within Pf6N2E2_4403at 5136.052 kb on + strand, within Pf6N2E2_4403at 5136.052 kb on + strand, within Pf6N2E2_4403at 5136.053 kb on - strand, within Pf6N2E2_4403at 5136.053 kb on - strand, within Pf6N2E2_4403at 5136.054 kb on + strand, within Pf6N2E2_4403at 5136.054 kb on + strand, within Pf6N2E2_4403at 5136.067 kb on + strand, within Pf6N2E2_4403at 5136.067 kb on + strand, within Pf6N2E2_4403at 5136.068 kb on - strand, within Pf6N2E2_4403at 5136.135 kb on - strand, within Pf6N2E2_4403at 5136.180 kb on + strand, within Pf6N2E2_4403at 5136.202 kb on + strand, within Pf6N2E2_4403at 5136.202 kb on + strand, within Pf6N2E2_4403at 5136.202 kb on + strand, within Pf6N2E2_4403at 5136.203 kb on - strand, within Pf6N2E2_4403at 5136.316 kb on + strandat 5136.317 kb on - strandat 5136.748 kb on - strand, within Pf6N2E2_4404at 5136.878 kb on + strand, within Pf6N2E2_4404at 5136.879 kb on - strand, within Pf6N2E2_4404at 5136.934 kb on + strand, within Pf6N2E2_4404at 5136.935 kb on - strand, within Pf6N2E2_4404at 5137.060 kb on + strand, within Pf6N2E2_4404at 5137.061 kb on - strand, within Pf6N2E2_4404at 5137.061 kb on - strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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5,134,224 + Pf6N2E2_4402 0.61 +0.6
5,134,224 + Pf6N2E2_4402 0.61 +0.6
5,134,224 + Pf6N2E2_4402 0.61 -0.3
5,134,225 - Pf6N2E2_4402 0.62 -0.4
5,134,225 - Pf6N2E2_4402 0.62 -2.3
5,134,448 + Pf6N2E2_4402 0.73 +0.7
5,134,448 + Pf6N2E2_4402 0.73 -0.0
5,134,448 + Pf6N2E2_4402 0.73 +0.7
5,134,448 + Pf6N2E2_4402 0.73 -0.1
5,134,449 - Pf6N2E2_4402 0.73 +0.1
5,134,449 - Pf6N2E2_4402 0.73 +0.4
5,134,449 - Pf6N2E2_4402 0.73 -0.3
5,134,449 - Pf6N2E2_4402 0.73 -0.4
5,134,449 - Pf6N2E2_4402 0.73 -0.3
5,134,631 + Pf6N2E2_4402 0.82 -0.7
5,134,658 + Pf6N2E2_4402 0.83 +0.1
5,134,658 + Pf6N2E2_4402 0.83 -0.8
5,134,659 - Pf6N2E2_4402 0.83 +0.8
5,135,156 + +0.7
5,135,290 + +1.2
5,135,290 + +0.1
5,135,290 + -0.7
5,135,290 + -0.4
5,135,291 - -0.9
5,135,291 - -2.5
5,135,291 - +0.7
5,135,291 - -0.4
5,135,291 - +0.4
5,135,291 - +0.8
5,135,291 - +0.6
5,135,305 - -1.7
5,135,694 + Pf6N2E2_4403 0.39 -0.4
5,135,694 + Pf6N2E2_4403 0.39 -0.1
5,135,695 - Pf6N2E2_4403 0.39 +1.7
5,135,695 - Pf6N2E2_4403 0.39 -0.2
5,135,695 - Pf6N2E2_4403 0.39 -0.1
5,135,695 - Pf6N2E2_4403 0.39 +0.3
5,135,695 - Pf6N2E2_4403 0.39 +0.3
5,135,695 - Pf6N2E2_4403 0.39 +0.3
5,135,695 - Pf6N2E2_4403 0.39 +0.8
5,135,695 - Pf6N2E2_4403 0.39 -0.1
5,135,695 - Pf6N2E2_4403 0.39 -0.1
5,135,740 + Pf6N2E2_4403 0.43 +2.1
5,135,740 + Pf6N2E2_4403 0.43 +0.0
5,135,740 + Pf6N2E2_4403 0.43 +0.6
5,135,887 + Pf6N2E2_4403 0.55 -0.4
5,135,888 - Pf6N2E2_4403 0.55 +0.4
5,135,899 + Pf6N2E2_4403 0.56 +0.3
5,135,900 - Pf6N2E2_4403 0.56 +1.7
5,136,037 + Pf6N2E2_4403 0.67 -0.4
5,136,037 + Pf6N2E2_4403 0.67 -0.2
5,136,038 - Pf6N2E2_4403 0.67 +0.4
5,136,038 - Pf6N2E2_4403 0.67 -0.4
5,136,052 + Pf6N2E2_4403 0.68 +0.7
5,136,052 + Pf6N2E2_4403 0.68 -0.6
5,136,053 - Pf6N2E2_4403 0.68 +0.5
5,136,053 - Pf6N2E2_4403 0.68 +1.6
5,136,054 + Pf6N2E2_4403 0.69 +1.3
5,136,054 + Pf6N2E2_4403 0.69 +0.2
5,136,067 + Pf6N2E2_4403 0.70 +0.8
5,136,067 + Pf6N2E2_4403 0.70 +0.4
5,136,068 - Pf6N2E2_4403 0.70 +0.2
5,136,135 - Pf6N2E2_4403 0.75 +0.4
5,136,180 + Pf6N2E2_4403 0.79 +1.0
5,136,202 + Pf6N2E2_4403 0.81 -0.5
5,136,202 + Pf6N2E2_4403 0.81 +1.0
5,136,202 + Pf6N2E2_4403 0.81 +0.5
5,136,203 - Pf6N2E2_4403 0.81 -0.0
5,136,316 + +0.5
5,136,317 - +0.6
5,136,748 - Pf6N2E2_4404 0.21 +0.2
5,136,878 + Pf6N2E2_4404 0.30 +1.1
5,136,879 - Pf6N2E2_4404 0.30 -0.3
5,136,934 + Pf6N2E2_4404 0.33 +0.0
5,136,935 - Pf6N2E2_4404 0.33 -0.8
5,137,060 + Pf6N2E2_4404 0.42 -0.4
5,137,061 - Pf6N2E2_4404 0.42 +0.3
5,137,061 - Pf6N2E2_4404 0.42 -1.0
5,137,348 + Pf6N2E2_4404 0.61 +0.4
5,137,348 + Pf6N2E2_4404 0.61 +0.3
5,137,348 + Pf6N2E2_4404 0.61 +0.6
5,137,348 + Pf6N2E2_4404 0.61 +0.0
5,137,349 - Pf6N2E2_4404 0.61 +0.2
5,137,349 - Pf6N2E2_4404 0.61 +0.9
5,137,349 - Pf6N2E2_4404 0.61 -0.5
5,137,349 - Pf6N2E2_4404 0.61 +0.5
5,137,349 - Pf6N2E2_4404 0.61 +0.4
5,137,349 - Pf6N2E2_4404 0.61 +0.9

Or see this region's nucleotide sequence