Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2401 and Pf6N2E2_2402 are separated by 174 nucleotides Pf6N2E2_2402 and Pf6N2E2_2403 are separated by 98 nucleotides
Pf6N2E2_2401 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 2,840,511 to 2,841,323
_2401
Pf6N2E2_2402 - hypothetical protein, at 2,841,498 to 2,841,761
_2402
Pf6N2E2_2403 - Pyoverdine chromophore precursor synthetase PvdL, at 2,841,860 to 2,854,846
_2403
Position (kb)
2841
2842 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2840.579 kb on + strand at 2840.580 kb on - strand at 2840.758 kb on - strand, within Pf6N2E2_2401 at 2840.818 kb on + strand, within Pf6N2E2_2401 at 2840.818 kb on + strand, within Pf6N2E2_2401 at 2840.819 kb on - strand, within Pf6N2E2_2401 at 2840.929 kb on + strand, within Pf6N2E2_2401 at 2840.930 kb on - strand, within Pf6N2E2_2401 at 2840.933 kb on - strand, within Pf6N2E2_2401 at 2840.965 kb on + strand, within Pf6N2E2_2401 at 2840.965 kb on + strand, within Pf6N2E2_2401 at 2840.965 kb on + strand, within Pf6N2E2_2401 at 2840.965 kb on + strand, within Pf6N2E2_2401 at 2840.965 kb on + strand, within Pf6N2E2_2401 at 2840.966 kb on - strand, within Pf6N2E2_2401 at 2840.966 kb on - strand, within Pf6N2E2_2401 at 2840.966 kb on - strand, within Pf6N2E2_2401 at 2840.966 kb on - strand, within Pf6N2E2_2401 at 2840.966 kb on - strand, within Pf6N2E2_2401 at 2840.966 kb on - strand, within Pf6N2E2_2401 at 2841.079 kb on + strand, within Pf6N2E2_2401 at 2841.079 kb on + strand, within Pf6N2E2_2401 at 2841.241 kb on + strand, within Pf6N2E2_2401 at 2841.241 kb on + strand, within Pf6N2E2_2401 at 2841.241 kb on + strand, within Pf6N2E2_2401 at 2841.242 kb on - strand at 2841.242 kb on - strand at 2841.242 kb on - strand at 2841.242 kb on - strand at 2841.286 kb on + strand at 2841.286 kb on + strand at 2841.287 kb on - strand at 2841.287 kb on - strand at 2841.289 kb on + strand at 2841.290 kb on - strand at 2841.290 kb on - strand at 2841.290 kb on - strand at 2841.290 kb on - strand at 2841.290 kb on - strand at 2841.290 kb on - strand at 2841.401 kb on - strand at 2841.401 kb on - strand at 2841.401 kb on - strand at 2841.423 kb on - strand at 2841.423 kb on - strand at 2841.436 kb on - strand at 2841.436 kb on - strand at 2841.436 kb on - strand at 2841.503 kb on + strand at 2841.633 kb on + strand, within Pf6N2E2_2402 at 2841.633 kb on + strand, within Pf6N2E2_2402 at 2841.634 kb on - strand, within Pf6N2E2_2402 at 2841.801 kb on - strand at 2841.847 kb on - strand at 2841.847 kb on - strand at 2841.861 kb on + strand at 2841.861 kb on + strand at 2841.861 kb on + strand at 2841.862 kb on - strand at 2841.945 kb on + strand at 2841.946 kb on - strand at 2841.946 kb on - strand at 2841.995 kb on + strand at 2841.996 kb on - strand at 2842.275 kb on + strand at 2842.275 kb on + strand at 2842.275 kb on + strand at 2842.276 kb on - strand at 2842.276 kb on - strand at 2842.276 kb on - strand at 2842.276 kb on - strand at 2842.276 kb on - strand at 2842.276 kb on - strand at 2842.507 kb on - strand at 2842.507 kb on - strand at 2842.554 kb on + strand at 2842.555 kb on - strand at 2842.626 kb on + strand at 2842.749 kb on + strand at 2842.749 kb on + strand at 2842.749 kb on + strand at 2842.749 kb on + strand at 2842.749 kb on + strand at 2842.749 kb on + strand at 2842.749 kb on + strand at 2842.749 kb on + strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.750 kb on - strand at 2842.753 kb on + strand at 2842.753 kb on + strand at 2842.753 kb on + strand at 2842.754 kb on - strand at 2842.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 2,840,579 + -0.2 2,840,580 - -0.8 2,840,758 - Pf6N2E2_2401 0.30 -0.2 2,840,818 + Pf6N2E2_2401 0.38 -0.1 2,840,818 + Pf6N2E2_2401 0.38 -0.7 2,840,819 - Pf6N2E2_2401 0.38 -0.7 2,840,929 + Pf6N2E2_2401 0.51 +0.6 2,840,930 - Pf6N2E2_2401 0.52 -0.1 2,840,933 - Pf6N2E2_2401 0.52 +0.9 2,840,965 + Pf6N2E2_2401 0.56 +0.6 2,840,965 + Pf6N2E2_2401 0.56 -0.5 2,840,965 + Pf6N2E2_2401 0.56 +0.9 2,840,965 + Pf6N2E2_2401 0.56 +0.3 2,840,965 + Pf6N2E2_2401 0.56 -0.8 2,840,966 - Pf6N2E2_2401 0.56 -0.4 2,840,966 - Pf6N2E2_2401 0.56 -2.5 2,840,966 - Pf6N2E2_2401 0.56 -1.3 2,840,966 - Pf6N2E2_2401 0.56 +1.7 2,840,966 - Pf6N2E2_2401 0.56 +0.1 2,840,966 - Pf6N2E2_2401 0.56 +0.8 2,841,079 + Pf6N2E2_2401 0.70 +0.3 2,841,079 + Pf6N2E2_2401 0.70 +0.4 2,841,241 + Pf6N2E2_2401 0.90 -0.6 2,841,241 + Pf6N2E2_2401 0.90 -0.7 2,841,241 + Pf6N2E2_2401 0.90 +0.9 2,841,242 - +1.1 2,841,242 - +0.1 2,841,242 - +0.9 2,841,242 - -1.0 2,841,286 + +0.3 2,841,286 + +0.7 2,841,287 - +0.2 2,841,287 - +0.1 2,841,289 + +0.6 2,841,290 - -0.3 2,841,290 - +0.2 2,841,290 - -0.3 2,841,290 - +0.7 2,841,290 - -0.6 2,841,290 - +0.3 2,841,401 - +0.0 2,841,401 - +0.6 2,841,401 - +0.8 2,841,423 - -0.6 2,841,423 - +0.5 2,841,436 - +0.5 2,841,436 - -2.2 2,841,436 - +0.5 2,841,503 + -1.0 2,841,633 + Pf6N2E2_2402 0.51 -1.7 2,841,633 + Pf6N2E2_2402 0.51 -0.5 2,841,634 - Pf6N2E2_2402 0.52 +0.1 2,841,801 - -0.7 2,841,847 - -0.3 2,841,847 - -0.3 2,841,861 + -0.7 2,841,861 + -0.1 2,841,861 + +0.9 2,841,862 - +0.0 2,841,945 + +0.9 2,841,946 - +0.1 2,841,946 - -1.0 2,841,995 + -1.6 2,841,996 - -0.6 2,842,275 + +0.4 2,842,275 + -1.5 2,842,275 + +0.4 2,842,276 - -0.4 2,842,276 - +0.1 2,842,276 - +0.4 2,842,276 - +0.4 2,842,276 - -1.0 2,842,276 - -0.5 2,842,507 - +0.2 2,842,507 - -0.1 2,842,554 + +0.4 2,842,555 - -0.3 2,842,626 + -0.0 2,842,749 + -0.2 2,842,749 + -0.5 2,842,749 + -2.2 2,842,749 + -0.5 2,842,749 + +0.9 2,842,749 + +0.5 2,842,749 + -0.5 2,842,749 + -0.3 2,842,750 - +0.9 2,842,750 - +0.4 2,842,750 - -0.9 2,842,750 - +0.9 2,842,750 - +0.3 2,842,750 - +0.4 2,842,750 - +1.4 2,842,750 - +0.7 2,842,750 - +1.8 2,842,750 - -0.3 2,842,753 + -1.4 2,842,753 + +0.7 2,842,753 + +0.6 2,842,754 - +0.3 2,842,754 - +0.8
Or see this region's nucleotide sequence