Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2402

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2401 and Pf6N2E2_2402 are separated by 174 nucleotidesPf6N2E2_2402 and Pf6N2E2_2403 are separated by 98 nucleotides Pf6N2E2_2401 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 2,840,511 to 2,841,323 _2401 Pf6N2E2_2402 - hypothetical protein, at 2,841,498 to 2,841,761 _2402 Pf6N2E2_2403 - Pyoverdine chromophore precursor synthetase PvdL, at 2,841,860 to 2,854,846 _2403 Position (kb) 2841 2842Strain fitness (log2 ratio) -2 -1 0 1 2at 2840.579 kb on + strandat 2840.580 kb on - strandat 2840.758 kb on - strand, within Pf6N2E2_2401at 2840.818 kb on + strand, within Pf6N2E2_2401at 2840.818 kb on + strand, within Pf6N2E2_2401at 2840.819 kb on - strand, within Pf6N2E2_2401at 2840.929 kb on + strand, within Pf6N2E2_2401at 2840.930 kb on - strand, within Pf6N2E2_2401at 2840.933 kb on - strand, within Pf6N2E2_2401at 2840.965 kb on + strand, within Pf6N2E2_2401at 2840.965 kb on + strand, within Pf6N2E2_2401at 2840.965 kb on + strand, within Pf6N2E2_2401at 2840.965 kb on + strand, within Pf6N2E2_2401at 2840.965 kb on + strand, within Pf6N2E2_2401at 2840.966 kb on - strand, within Pf6N2E2_2401at 2840.966 kb on - strand, within Pf6N2E2_2401at 2840.966 kb on - strand, within Pf6N2E2_2401at 2840.966 kb on - strand, within Pf6N2E2_2401at 2840.966 kb on - strand, within Pf6N2E2_2401at 2840.966 kb on - strand, within Pf6N2E2_2401at 2841.079 kb on + strand, within Pf6N2E2_2401at 2841.079 kb on + strand, within Pf6N2E2_2401at 2841.241 kb on + strand, within Pf6N2E2_2401at 2841.241 kb on + strand, within Pf6N2E2_2401at 2841.241 kb on + strand, within Pf6N2E2_2401at 2841.242 kb on - strandat 2841.242 kb on - strandat 2841.242 kb on - strandat 2841.242 kb on - strandat 2841.286 kb on + strandat 2841.286 kb on + strandat 2841.287 kb on - strandat 2841.287 kb on - strandat 2841.289 kb on + strandat 2841.290 kb on - strandat 2841.290 kb on - strandat 2841.290 kb on - strandat 2841.290 kb on - strandat 2841.290 kb on - strandat 2841.290 kb on - strandat 2841.401 kb on - strandat 2841.401 kb on - strandat 2841.401 kb on - strandat 2841.423 kb on - strandat 2841.423 kb on - strandat 2841.436 kb on - strandat 2841.436 kb on - strandat 2841.436 kb on - strandat 2841.503 kb on + strandat 2841.633 kb on + strand, within Pf6N2E2_2402at 2841.633 kb on + strand, within Pf6N2E2_2402at 2841.634 kb on - strand, within Pf6N2E2_2402at 2841.801 kb on - strandat 2841.847 kb on - strandat 2841.847 kb on - strandat 2841.861 kb on + strandat 2841.861 kb on + strandat 2841.861 kb on + strandat 2841.862 kb on - strandat 2841.945 kb on + strandat 2841.946 kb on - strandat 2841.946 kb on - strandat 2841.995 kb on + strandat 2841.996 kb on - strandat 2842.275 kb on + strandat 2842.275 kb on + strandat 2842.275 kb on + strandat 2842.276 kb on - strandat 2842.276 kb on - strandat 2842.276 kb on - strandat 2842.276 kb on - strandat 2842.276 kb on - strandat 2842.276 kb on - strandat 2842.507 kb on - strandat 2842.507 kb on - strandat 2842.554 kb on + strandat 2842.555 kb on - strandat 2842.626 kb on + strandat 2842.749 kb on + strandat 2842.749 kb on + strandat 2842.749 kb on + strandat 2842.749 kb on + strandat 2842.749 kb on + strandat 2842.749 kb on + strandat 2842.749 kb on + strandat 2842.749 kb on + strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.750 kb on - strandat 2842.753 kb on + strandat 2842.753 kb on + strandat 2842.753 kb on + strandat 2842.754 kb on - strandat 2842.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,840,579 + -0.2
2,840,580 - -0.8
2,840,758 - Pf6N2E2_2401 0.30 -0.2
2,840,818 + Pf6N2E2_2401 0.38 -0.1
2,840,818 + Pf6N2E2_2401 0.38 -0.7
2,840,819 - Pf6N2E2_2401 0.38 -0.7
2,840,929 + Pf6N2E2_2401 0.51 +0.6
2,840,930 - Pf6N2E2_2401 0.52 -0.1
2,840,933 - Pf6N2E2_2401 0.52 +0.9
2,840,965 + Pf6N2E2_2401 0.56 +0.6
2,840,965 + Pf6N2E2_2401 0.56 -0.5
2,840,965 + Pf6N2E2_2401 0.56 +0.9
2,840,965 + Pf6N2E2_2401 0.56 +0.3
2,840,965 + Pf6N2E2_2401 0.56 -0.8
2,840,966 - Pf6N2E2_2401 0.56 -0.4
2,840,966 - Pf6N2E2_2401 0.56 -2.5
2,840,966 - Pf6N2E2_2401 0.56 -1.3
2,840,966 - Pf6N2E2_2401 0.56 +1.7
2,840,966 - Pf6N2E2_2401 0.56 +0.1
2,840,966 - Pf6N2E2_2401 0.56 +0.8
2,841,079 + Pf6N2E2_2401 0.70 +0.3
2,841,079 + Pf6N2E2_2401 0.70 +0.4
2,841,241 + Pf6N2E2_2401 0.90 -0.6
2,841,241 + Pf6N2E2_2401 0.90 -0.7
2,841,241 + Pf6N2E2_2401 0.90 +0.9
2,841,242 - +1.1
2,841,242 - +0.1
2,841,242 - +0.9
2,841,242 - -1.0
2,841,286 + +0.3
2,841,286 + +0.7
2,841,287 - +0.2
2,841,287 - +0.1
2,841,289 + +0.6
2,841,290 - -0.3
2,841,290 - +0.2
2,841,290 - -0.3
2,841,290 - +0.7
2,841,290 - -0.6
2,841,290 - +0.3
2,841,401 - +0.0
2,841,401 - +0.6
2,841,401 - +0.8
2,841,423 - -0.6
2,841,423 - +0.5
2,841,436 - +0.5
2,841,436 - -2.2
2,841,436 - +0.5
2,841,503 + -1.0
2,841,633 + Pf6N2E2_2402 0.51 -1.7
2,841,633 + Pf6N2E2_2402 0.51 -0.5
2,841,634 - Pf6N2E2_2402 0.52 +0.1
2,841,801 - -0.7
2,841,847 - -0.3
2,841,847 - -0.3
2,841,861 + -0.7
2,841,861 + -0.1
2,841,861 + +0.9
2,841,862 - +0.0
2,841,945 + +0.9
2,841,946 - +0.1
2,841,946 - -1.0
2,841,995 + -1.6
2,841,996 - -0.6
2,842,275 + +0.4
2,842,275 + -1.5
2,842,275 + +0.4
2,842,276 - -0.4
2,842,276 - +0.1
2,842,276 - +0.4
2,842,276 - +0.4
2,842,276 - -1.0
2,842,276 - -0.5
2,842,507 - +0.2
2,842,507 - -0.1
2,842,554 + +0.4
2,842,555 - -0.3
2,842,626 + -0.0
2,842,749 + -0.2
2,842,749 + -0.5
2,842,749 + -2.2
2,842,749 + -0.5
2,842,749 + +0.9
2,842,749 + +0.5
2,842,749 + -0.5
2,842,749 + -0.3
2,842,750 - +0.9
2,842,750 - +0.4
2,842,750 - -0.9
2,842,750 - +0.9
2,842,750 - +0.3
2,842,750 - +0.4
2,842,750 - +1.4
2,842,750 - +0.7
2,842,750 - +1.8
2,842,750 - -0.3
2,842,753 + -1.4
2,842,753 + +0.7
2,842,753 + +0.6
2,842,754 - +0.3
2,842,754 - +0.8

Or see this region's nucleotide sequence