Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4029

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4027 and Pf6N2E2_4028 are separated by 67 nucleotidesPf6N2E2_4028 and Pf6N2E2_4029 overlap by 4 nucleotidesPf6N2E2_4029 and Pf6N2E2_4030 are separated by 1 nucleotides Pf6N2E2_4027 - Ferredoxin reductase, at 4,698,874 to 4,700,406 _4027 Pf6N2E2_4028 - Biofilm PGA synthesis auxiliary protein PgaD, at 4,700,474 to 4,700,980 _4028 Pf6N2E2_4029 - Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-), at 4,700,977 to 4,702,332 _4029 Pf6N2E2_4030 - Biofilm PGA synthesis deacetylase PgaB (EC 3.-), at 4,702,334 to 4,704,331 _4030 Position (kb) 4700 4701 4702 4703Strain fitness (log2 ratio) -2 -1 0 1at 4700.021 kb on + strand, within Pf6N2E2_4027at 4700.147 kb on - strand, within Pf6N2E2_4027at 4700.173 kb on + strand, within Pf6N2E2_4027at 4700.173 kb on + strand, within Pf6N2E2_4027at 4700.173 kb on + strand, within Pf6N2E2_4027at 4700.173 kb on + strand, within Pf6N2E2_4027at 4700.173 kb on + strand, within Pf6N2E2_4027at 4700.174 kb on - strand, within Pf6N2E2_4027at 4700.174 kb on - strand, within Pf6N2E2_4027at 4700.191 kb on + strand, within Pf6N2E2_4027at 4700.192 kb on - strand, within Pf6N2E2_4027at 4700.197 kb on + strand, within Pf6N2E2_4027at 4700.197 kb on + strand, within Pf6N2E2_4027at 4700.197 kb on + strand, within Pf6N2E2_4027at 4700.197 kb on + strand, within Pf6N2E2_4027at 4700.197 kb on + strand, within Pf6N2E2_4027at 4700.198 kb on - strand, within Pf6N2E2_4027at 4700.198 kb on - strand, within Pf6N2E2_4027at 4700.198 kb on - strand, within Pf6N2E2_4027at 4700.262 kb on + strandat 4700.262 kb on + strandat 4700.262 kb on + strandat 4700.262 kb on + strandat 4700.263 kb on - strandat 4700.404 kb on + strandat 4700.404 kb on + strandat 4700.404 kb on + strandat 4700.404 kb on + strandat 4700.405 kb on - strandat 4700.405 kb on - strandat 4700.480 kb on + strandat 4700.480 kb on + strandat 4700.481 kb on - strandat 4700.481 kb on - strandat 4700.481 kb on - strandat 4700.614 kb on + strand, within Pf6N2E2_4028at 4700.614 kb on + strand, within Pf6N2E2_4028at 4700.614 kb on + strand, within Pf6N2E2_4028at 4700.614 kb on + strand, within Pf6N2E2_4028at 4700.614 kb on + strand, within Pf6N2E2_4028at 4700.614 kb on + strand, within Pf6N2E2_4028at 4700.615 kb on - strand, within Pf6N2E2_4028at 4700.615 kb on - strand, within Pf6N2E2_4028at 4700.615 kb on - strand, within Pf6N2E2_4028at 4700.615 kb on - strand, within Pf6N2E2_4028at 4700.615 kb on - strand, within Pf6N2E2_4028at 4700.737 kb on + strand, within Pf6N2E2_4028at 4700.799 kb on + strand, within Pf6N2E2_4028at 4700.799 kb on + strand, within Pf6N2E2_4028at 4700.800 kb on - strand, within Pf6N2E2_4028at 4700.800 kb on - strand, within Pf6N2E2_4028at 4700.800 kb on - strand, within Pf6N2E2_4028at 4700.895 kb on + strand, within Pf6N2E2_4028at 4700.895 kb on + strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.896 kb on - strand, within Pf6N2E2_4028at 4700.918 kb on + strand, within Pf6N2E2_4028at 4700.919 kb on - strand, within Pf6N2E2_4028at 4700.919 kb on - strand, within Pf6N2E2_4028at 4700.919 kb on - strand, within Pf6N2E2_4028at 4700.972 kb on - strandat 4701.068 kb on - strandat 4701.068 kb on - strandat 4701.068 kb on - strandat 4701.356 kb on + strand, within Pf6N2E2_4029at 4701.380 kb on + strand, within Pf6N2E2_4029at 4701.518 kb on + strand, within Pf6N2E2_4029at 4701.519 kb on - strand, within Pf6N2E2_4029at 4701.519 kb on - strand, within Pf6N2E2_4029at 4701.727 kb on + strand, within Pf6N2E2_4029at 4701.810 kb on - strand, within Pf6N2E2_4029at 4701.860 kb on + strand, within Pf6N2E2_4029at 4701.860 kb on + strand, within Pf6N2E2_4029at 4701.861 kb on - strand, within Pf6N2E2_4029at 4702.181 kb on + strand, within Pf6N2E2_4029at 4702.181 kb on + strand, within Pf6N2E2_4029at 4702.182 kb on - strand, within Pf6N2E2_4029at 4702.182 kb on - strand, within Pf6N2E2_4029at 4702.410 kb on + strandat 4702.410 kb on + strandat 4702.413 kb on + strandat 4702.435 kb on + strandat 4702.436 kb on - strandat 4702.436 kb on - strandat 4702.891 kb on - strand, within Pf6N2E2_4030at 4702.891 kb on - strand, within Pf6N2E2_4030at 4702.951 kb on - strand, within Pf6N2E2_4030at 4702.992 kb on + strand, within Pf6N2E2_4030at 4702.992 kb on + strand, within Pf6N2E2_4030at 4702.993 kb on - strand, within Pf6N2E2_4030at 4703.046 kb on + strand, within Pf6N2E2_4030at 4703.046 kb on + strand, within Pf6N2E2_4030at 4703.046 kb on + strand, within Pf6N2E2_4030at 4703.047 kb on - strand, within Pf6N2E2_4030at 4703.047 kb on - strand, within Pf6N2E2_4030at 4703.148 kb on + strand, within Pf6N2E2_4030at 4703.148 kb on + strand, within Pf6N2E2_4030at 4703.148 kb on + strand, within Pf6N2E2_4030at 4703.148 kb on + strand, within Pf6N2E2_4030at 4703.148 kb on + strand, within Pf6N2E2_4030at 4703.149 kb on - strand, within Pf6N2E2_4030at 4703.236 kb on - strand, within Pf6N2E2_4030at 4703.236 kb on - strand, within Pf6N2E2_4030at 4703.236 kb on - strand, within Pf6N2E2_4030at 4703.236 kb on - strand, within Pf6N2E2_4030at 4703.293 kb on + strand, within Pf6N2E2_4030at 4703.293 kb on + strand, within Pf6N2E2_4030at 4703.294 kb on - strand, within Pf6N2E2_4030at 4703.294 kb on - strand, within Pf6N2E2_4030at 4703.314 kb on + strand, within Pf6N2E2_4030at 4703.314 kb on + strand, within Pf6N2E2_4030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,700,021 + Pf6N2E2_4027 0.75 -1.0
4,700,147 - Pf6N2E2_4027 0.83 -0.1
4,700,173 + Pf6N2E2_4027 0.85 +0.5
4,700,173 + Pf6N2E2_4027 0.85 -1.7
4,700,173 + Pf6N2E2_4027 0.85 +1.0
4,700,173 + Pf6N2E2_4027 0.85 +0.2
4,700,173 + Pf6N2E2_4027 0.85 +0.6
4,700,174 - Pf6N2E2_4027 0.85 -0.9
4,700,174 - Pf6N2E2_4027 0.85 +0.2
4,700,191 + Pf6N2E2_4027 0.86 -1.5
4,700,192 - Pf6N2E2_4027 0.86 +0.1
4,700,197 + Pf6N2E2_4027 0.86 +0.6
4,700,197 + Pf6N2E2_4027 0.86 +0.4
4,700,197 + Pf6N2E2_4027 0.86 -0.8
4,700,197 + Pf6N2E2_4027 0.86 +0.1
4,700,197 + Pf6N2E2_4027 0.86 -0.0
4,700,198 - Pf6N2E2_4027 0.86 +0.0
4,700,198 - Pf6N2E2_4027 0.86 -0.8
4,700,198 - Pf6N2E2_4027 0.86 -0.4
4,700,262 + -1.3
4,700,262 + +0.1
4,700,262 + +0.0
4,700,262 + +0.1
4,700,263 - -0.8
4,700,404 + -0.6
4,700,404 + +0.3
4,700,404 + -0.6
4,700,404 + -0.3
4,700,405 - -0.1
4,700,405 - +0.9
4,700,480 + +0.4
4,700,480 + -0.1
4,700,481 - +0.7
4,700,481 - +0.8
4,700,481 - +0.1
4,700,614 + Pf6N2E2_4028 0.28 +0.6
4,700,614 + Pf6N2E2_4028 0.28 +0.6
4,700,614 + Pf6N2E2_4028 0.28 -0.4
4,700,614 + Pf6N2E2_4028 0.28 +0.5
4,700,614 + Pf6N2E2_4028 0.28 +0.8
4,700,614 + Pf6N2E2_4028 0.28 -0.4
4,700,615 - Pf6N2E2_4028 0.28 +0.5
4,700,615 - Pf6N2E2_4028 0.28 +1.0
4,700,615 - Pf6N2E2_4028 0.28 +0.4
4,700,615 - Pf6N2E2_4028 0.28 +0.3
4,700,615 - Pf6N2E2_4028 0.28 -0.5
4,700,737 + Pf6N2E2_4028 0.52 +1.0
4,700,799 + Pf6N2E2_4028 0.64 +0.4
4,700,799 + Pf6N2E2_4028 0.64 -1.3
4,700,800 - Pf6N2E2_4028 0.64 -0.1
4,700,800 - Pf6N2E2_4028 0.64 -0.7
4,700,800 - Pf6N2E2_4028 0.64 -0.0
4,700,895 + Pf6N2E2_4028 0.83 +0.5
4,700,895 + Pf6N2E2_4028 0.83 +0.4
4,700,896 - Pf6N2E2_4028 0.83 +0.8
4,700,896 - Pf6N2E2_4028 0.83 +0.3
4,700,896 - Pf6N2E2_4028 0.83 -0.9
4,700,896 - Pf6N2E2_4028 0.83 +0.1
4,700,896 - Pf6N2E2_4028 0.83 +0.5
4,700,896 - Pf6N2E2_4028 0.83 +0.1
4,700,896 - Pf6N2E2_4028 0.83 -0.0
4,700,896 - Pf6N2E2_4028 0.83 +0.0
4,700,896 - Pf6N2E2_4028 0.83 +0.2
4,700,896 - Pf6N2E2_4028 0.83 +0.1
4,700,918 + Pf6N2E2_4028 0.88 +1.2
4,700,919 - Pf6N2E2_4028 0.88 +0.4
4,700,919 - Pf6N2E2_4028 0.88 +0.8
4,700,919 - Pf6N2E2_4028 0.88 -0.2
4,700,972 - -0.7
4,701,068 - +0.1
4,701,068 - +1.2
4,701,068 - +0.8
4,701,356 + Pf6N2E2_4029 0.28 +0.4
4,701,380 + Pf6N2E2_4029 0.30 -0.2
4,701,518 + Pf6N2E2_4029 0.40 +0.7
4,701,519 - Pf6N2E2_4029 0.40 +0.5
4,701,519 - Pf6N2E2_4029 0.40 -0.1
4,701,727 + Pf6N2E2_4029 0.55 +0.3
4,701,810 - Pf6N2E2_4029 0.61 +0.1
4,701,860 + Pf6N2E2_4029 0.65 -2.2
4,701,860 + Pf6N2E2_4029 0.65 +0.5
4,701,861 - Pf6N2E2_4029 0.65 -0.0
4,702,181 + Pf6N2E2_4029 0.89 -0.6
4,702,181 + Pf6N2E2_4029 0.89 -0.1
4,702,182 - Pf6N2E2_4029 0.89 +0.2
4,702,182 - Pf6N2E2_4029 0.89 -0.7
4,702,410 + +0.5
4,702,410 + +0.4
4,702,413 + -0.2
4,702,435 + +1.3
4,702,436 - -1.1
4,702,436 - +0.5
4,702,891 - Pf6N2E2_4030 0.28 -0.8
4,702,891 - Pf6N2E2_4030 0.28 -0.5
4,702,951 - Pf6N2E2_4030 0.31 -0.3
4,702,992 + Pf6N2E2_4030 0.33 +0.2
4,702,992 + Pf6N2E2_4030 0.33 +0.3
4,702,993 - Pf6N2E2_4030 0.33 +0.2
4,703,046 + Pf6N2E2_4030 0.36 +0.6
4,703,046 + Pf6N2E2_4030 0.36 -2.2
4,703,046 + Pf6N2E2_4030 0.36 -0.1
4,703,047 - Pf6N2E2_4030 0.36 -1.1
4,703,047 - Pf6N2E2_4030 0.36 -0.4
4,703,148 + Pf6N2E2_4030 0.41 +0.4
4,703,148 + Pf6N2E2_4030 0.41 -0.1
4,703,148 + Pf6N2E2_4030 0.41 -1.9
4,703,148 + Pf6N2E2_4030 0.41 +0.8
4,703,148 + Pf6N2E2_4030 0.41 +0.4
4,703,149 - Pf6N2E2_4030 0.41 -0.4
4,703,236 - Pf6N2E2_4030 0.45 +0.0
4,703,236 - Pf6N2E2_4030 0.45 +1.0
4,703,236 - Pf6N2E2_4030 0.45 +0.4
4,703,236 - Pf6N2E2_4030 0.45 +0.1
4,703,293 + Pf6N2E2_4030 0.48 -1.8
4,703,293 + Pf6N2E2_4030 0.48 +0.7
4,703,294 - Pf6N2E2_4030 0.48 +0.1
4,703,294 - Pf6N2E2_4030 0.48 -0.9
4,703,314 + Pf6N2E2_4030 0.49 +1.3
4,703,314 + Pf6N2E2_4030 0.49 -0.0

Or see this region's nucleotide sequence