Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3164

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3163 and Pf6N2E2_3164 are separated by 667 nucleotidesPf6N2E2_3164 and Pf6N2E2_3165 are separated by 79 nucleotides Pf6N2E2_3163 - putative DNA-binding protein, at 3,656,301 to 3,656,825 _3163 Pf6N2E2_3164 - GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2), at 3,657,493 to 3,659,070 _3164 Pf6N2E2_3165 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain, at 3,659,150 to 3,660,619 _3165 Position (kb) 3657 3658 3659 3660Strain fitness (log2 ratio) -1 0 1at 3656.548 kb on - strand, within Pf6N2E2_3163at 3656.548 kb on - strand, within Pf6N2E2_3163at 3656.548 kb on - strand, within Pf6N2E2_3163at 3656.565 kb on + strand, within Pf6N2E2_3163at 3656.583 kb on + strand, within Pf6N2E2_3163at 3656.584 kb on - strand, within Pf6N2E2_3163at 3656.584 kb on - strand, within Pf6N2E2_3163at 3656.596 kb on - strand, within Pf6N2E2_3163at 3656.648 kb on + strand, within Pf6N2E2_3163at 3656.648 kb on + strand, within Pf6N2E2_3163at 3656.648 kb on + strand, within Pf6N2E2_3163at 3656.649 kb on - strand, within Pf6N2E2_3163at 3656.800 kb on + strandat 3656.810 kb on + strandat 3656.811 kb on - strandat 3656.811 kb on - strandat 3656.817 kb on - strandat 3656.831 kb on + strandat 3656.831 kb on + strandat 3656.831 kb on + strandat 3656.831 kb on + strandat 3656.831 kb on + strandat 3656.832 kb on - strandat 3656.832 kb on - strandat 3656.832 kb on - strandat 3656.847 kb on - strandat 3656.847 kb on - strandat 3656.847 kb on - strandat 3656.988 kb on - strandat 3656.996 kb on + strandat 3656.997 kb on - strandat 3657.031 kb on + strandat 3657.031 kb on + strandat 3657.031 kb on + strandat 3657.031 kb on + strandat 3657.032 kb on - strandat 3657.032 kb on - strandat 3657.032 kb on - strandat 3657.032 kb on - strandat 3657.119 kb on + strandat 3657.120 kb on - strandat 3657.269 kb on + strandat 3657.270 kb on - strandat 3657.270 kb on - strandat 3657.270 kb on - strandat 3657.299 kb on + strandat 3657.305 kb on + strandat 3657.346 kb on + strandat 3657.346 kb on + strandat 3657.346 kb on + strandat 3657.346 kb on + strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.347 kb on - strandat 3657.392 kb on + strandat 3657.393 kb on - strandat 3657.418 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,656,548 - Pf6N2E2_3163 0.47 +0.6
3,656,548 - Pf6N2E2_3163 0.47 +0.2
3,656,548 - Pf6N2E2_3163 0.47 +0.5
3,656,565 + Pf6N2E2_3163 0.50 +0.3
3,656,583 + Pf6N2E2_3163 0.54 +0.1
3,656,584 - Pf6N2E2_3163 0.54 -0.1
3,656,584 - Pf6N2E2_3163 0.54 -0.1
3,656,596 - Pf6N2E2_3163 0.56 +0.4
3,656,648 + Pf6N2E2_3163 0.66 -1.1
3,656,648 + Pf6N2E2_3163 0.66 -1.0
3,656,648 + Pf6N2E2_3163 0.66 -1.0
3,656,649 - Pf6N2E2_3163 0.66 +0.1
3,656,800 + -0.5
3,656,810 + -0.5
3,656,811 - +1.3
3,656,811 - +0.8
3,656,817 - +0.4
3,656,831 + -0.2
3,656,831 + +0.1
3,656,831 + -0.6
3,656,831 + +0.3
3,656,831 + +0.6
3,656,832 - +0.3
3,656,832 - +1.6
3,656,832 - -0.7
3,656,847 - +0.6
3,656,847 - +0.3
3,656,847 - -0.2
3,656,988 - -0.5
3,656,996 + +0.2
3,656,997 - -1.1
3,657,031 + +0.1
3,657,031 + +0.7
3,657,031 + +0.4
3,657,031 + +0.1
3,657,032 - +0.7
3,657,032 - +1.4
3,657,032 - +0.1
3,657,032 - -0.4
3,657,119 + -0.6
3,657,120 - +0.2
3,657,269 + +0.8
3,657,270 - +0.9
3,657,270 - +0.1
3,657,270 - -0.2
3,657,299 + -0.4
3,657,305 + +0.1
3,657,346 + -0.4
3,657,346 + -0.1
3,657,346 + -0.1
3,657,346 + -0.4
3,657,347 - -0.3
3,657,347 - +0.4
3,657,347 - -0.8
3,657,347 - -0.1
3,657,347 - -0.5
3,657,347 - -0.9
3,657,347 - +0.3
3,657,347 - -1.1
3,657,347 - -0.5
3,657,392 + -0.6
3,657,393 - +1.2
3,657,418 + -0.7

Or see this region's nucleotide sequence