Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_704

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_702 and Pf6N2E2_703 overlap by 4 nucleotidesPf6N2E2_703 and Pf6N2E2_704 are separated by 190 nucleotidesPf6N2E2_704 and Pf6N2E2_705 are separated by 24 nucleotides Pf6N2E2_702 - Heme d1 biosynthesis protein NirF, at 807,015 to 808,193 _702 Pf6N2E2_703 - Cytochrome c55X precursor NirC, at 808,190 to 808,519 _703 Pf6N2E2_704 - Cytochrome c551/c552, at 808,710 to 809,018 _704 Pf6N2E2_705 - Cytochrome cd1 nitrite reductase (EC:1.7.2.1), at 809,043 to 810,722 _705 Position (kb) 808 809 810Strain fitness (log2 ratio) -2 -1 0 1 2at 807.814 kb on - strand, within Pf6N2E2_702at 807.835 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.970 kb on + strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 807.971 kb on - strand, within Pf6N2E2_702at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.377 kb on + strand, within Pf6N2E2_703at 808.378 kb on - strand, within Pf6N2E2_703at 808.378 kb on - strand, within Pf6N2E2_703at 808.534 kb on + strandat 808.534 kb on + strandat 808.535 kb on - strandat 808.711 kb on + strandat 808.712 kb on - strandat 808.712 kb on - strandat 808.712 kb on - strandat 808.715 kb on + strandat 808.716 kb on - strandat 808.716 kb on - strandat 808.805 kb on + strand, within Pf6N2E2_704at 808.806 kb on - strand, within Pf6N2E2_704at 808.806 kb on - strand, within Pf6N2E2_704at 808.901 kb on + strand, within Pf6N2E2_704at 808.902 kb on - strand, within Pf6N2E2_704at 809.010 kb on - strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.047 kb on + strandat 809.048 kb on - strandat 809.048 kb on - strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.068 kb on + strandat 809.069 kb on - strandat 809.218 kb on + strand, within Pf6N2E2_705at 809.219 kb on - strand, within Pf6N2E2_705at 809.263 kb on + strand, within Pf6N2E2_705at 809.264 kb on - strand, within Pf6N2E2_705at 809.368 kb on + strand, within Pf6N2E2_705at 809.368 kb on + strand, within Pf6N2E2_705at 809.369 kb on - strand, within Pf6N2E2_705at 809.369 kb on - strand, within Pf6N2E2_705at 809.369 kb on - strand, within Pf6N2E2_705at 809.369 kb on - strand, within Pf6N2E2_705at 809.369 kb on - strand, within Pf6N2E2_705at 809.453 kb on - strand, within Pf6N2E2_705at 809.453 kb on - strand, within Pf6N2E2_705at 809.666 kb on - strand, within Pf6N2E2_705at 809.666 kb on - strand, within Pf6N2E2_705at 809.749 kb on + strand, within Pf6N2E2_705at 809.959 kb on + strand, within Pf6N2E2_705at 809.959 kb on + strand, within Pf6N2E2_705at 809.959 kb on + strand, within Pf6N2E2_705at 809.959 kb on + strand, within Pf6N2E2_705at 809.960 kb on - strand, within Pf6N2E2_705

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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807,814 - Pf6N2E2_702 0.68 +0.6
807,835 + Pf6N2E2_702 0.70 -0.4
807,970 + Pf6N2E2_702 0.81 +0.9
807,970 + Pf6N2E2_702 0.81 -0.1
807,970 + Pf6N2E2_702 0.81 -0.9
807,970 + Pf6N2E2_702 0.81 +0.9
807,970 + Pf6N2E2_702 0.81 -1.1
807,971 - Pf6N2E2_702 0.81 -0.9
807,971 - Pf6N2E2_702 0.81 +2.0
807,971 - Pf6N2E2_702 0.81 +0.6
807,971 - Pf6N2E2_702 0.81 -1.2
808,377 + Pf6N2E2_703 0.57 -0.9
808,377 + Pf6N2E2_703 0.57 +0.8
808,377 + Pf6N2E2_703 0.57 -0.9
808,377 + Pf6N2E2_703 0.57 -0.4
808,377 + Pf6N2E2_703 0.57 -0.3
808,377 + Pf6N2E2_703 0.57 -1.5
808,378 - Pf6N2E2_703 0.57 +2.2
808,378 - Pf6N2E2_703 0.57 -2.0
808,534 + -1.1
808,534 + -0.0
808,535 - -0.3
808,711 + +1.4
808,712 - +0.0
808,712 - +0.1
808,712 - +1.0
808,715 + -0.1
808,716 - +0.7
808,716 - +0.8
808,805 + Pf6N2E2_704 0.31 -0.2
808,806 - Pf6N2E2_704 0.31 -1.5
808,806 - Pf6N2E2_704 0.31 -1.3
808,901 + Pf6N2E2_704 0.62 -0.2
808,902 - Pf6N2E2_704 0.62 -1.0
809,010 - -0.8
809,047 + -1.9
809,047 + -1.5
809,047 + +0.1
809,047 + +0.6
809,047 + +0.8
809,048 - +0.2
809,048 - -0.1
809,068 + -1.4
809,068 + -0.2
809,068 + -0.3
809,068 + -1.3
809,068 + +1.5
809,068 + +0.3
809,068 + -2.0
809,069 - +1.1
809,218 + Pf6N2E2_705 0.10 +1.5
809,219 - Pf6N2E2_705 0.10 +2.4
809,263 + Pf6N2E2_705 0.13 -0.5
809,264 - Pf6N2E2_705 0.13 +0.6
809,368 + Pf6N2E2_705 0.19 +1.1
809,368 + Pf6N2E2_705 0.19 -2.7
809,369 - Pf6N2E2_705 0.19 -0.4
809,369 - Pf6N2E2_705 0.19 +0.0
809,369 - Pf6N2E2_705 0.19 +0.4
809,369 - Pf6N2E2_705 0.19 -1.5
809,369 - Pf6N2E2_705 0.19 +0.0
809,453 - Pf6N2E2_705 0.24 +0.1
809,453 - Pf6N2E2_705 0.24 +1.1
809,666 - Pf6N2E2_705 0.37 -0.4
809,666 - Pf6N2E2_705 0.37 +0.5
809,749 + Pf6N2E2_705 0.42 -0.3
809,959 + Pf6N2E2_705 0.55 -1.0
809,959 + Pf6N2E2_705 0.55 +0.1
809,959 + Pf6N2E2_705 0.55 -1.1
809,959 + Pf6N2E2_705 0.55 +0.6
809,960 - Pf6N2E2_705 0.55 -2.2

Or see this region's nucleotide sequence