Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_604 and Pf6N2E2_605 are separated by 403 nucleotides Pf6N2E2_605 and Pf6N2E2_606 are separated by 43 nucleotides
Pf6N2E2_604 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 678,116 to 680,773
_604
Pf6N2E2_605 - FIG002465: BNR repeat protein, at 681,177 to 682,214
_605
Pf6N2E2_606 - FIG005548: transport protein, at 682,258 to 684,633
_606
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.771 kb on + strand at 680.772 kb on - strand at 680.949 kb on + strand at 680.949 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.964 kb on + strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.965 kb on - strand at 680.988 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.031 kb on + strand at 681.037 kb on - strand at 681.054 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.074 kb on + strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.075 kb on - strand at 681.110 kb on - strand at 681.136 kb on + strand at 681.137 kb on - strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.142 kb on + strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.143 kb on - strand at 681.145 kb on + strand at 681.145 kb on + strand at 681.146 kb on - strand at 681.146 kb on - strand at 681.161 kb on + strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.162 kb on - strand at 681.310 kb on - strand, within Pf6N2E2_605 at 681.409 kb on - strand, within Pf6N2E2_605 at 681.897 kb on + strand, within Pf6N2E2_605 at 681.898 kb on - strand, within Pf6N2E2_605 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.528 kb on + strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.529 kb on - strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.567 kb on + strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.568 kb on - strand, within Pf6N2E2_606 at 682.678 kb on + strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.679 kb on - strand, within Pf6N2E2_606 at 682.681 kb on - strand, within Pf6N2E2_606
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 680,771 + +1.0 680,772 - -1.2 680,949 + -1.0 680,949 + +1.4 680,964 + -0.1 680,964 + -0.8 680,964 + +0.5 680,965 - +0.5 680,965 - +0.8 680,965 - -0.2 680,965 - -2.5 680,965 - +0.3 680,988 + +0.5 681,031 + -0.2 681,031 + +0.8 681,031 + +1.1 681,031 + -0.8 681,037 - +0.2 681,054 + +1.0 681,074 + +0.2 681,074 + +0.2 681,074 + -1.0 681,074 + +1.4 681,075 - +0.3 681,075 - +0.8 681,075 - +0.2 681,110 - -0.0 681,136 + -0.2 681,137 - +1.4 681,142 + +0.8 681,142 + -0.7 681,142 + -0.7 681,142 + -0.2 681,143 - +0.5 681,143 - +0.3 681,143 - -1.1 681,143 - -2.0 681,143 - -0.7 681,145 + -0.5 681,145 + -0.3 681,146 - +0.2 681,146 - +0.4 681,161 + +0.6 681,162 - +0.3 681,162 - +0.6 681,162 - +1.4 681,162 - -0.4 681,310 - Pf6N2E2_605 0.13 -2.0 681,409 - Pf6N2E2_605 0.22 -1.2 681,897 + Pf6N2E2_605 0.69 +0.1 681,898 - Pf6N2E2_605 0.69 -0.9 682,528 + Pf6N2E2_606 0.11 +1.5 682,528 + Pf6N2E2_606 0.11 -0.4 682,528 + Pf6N2E2_606 0.11 +0.6 682,528 + Pf6N2E2_606 0.11 +0.7 682,528 + Pf6N2E2_606 0.11 -0.7 682,529 - Pf6N2E2_606 0.11 +0.6 682,529 - Pf6N2E2_606 0.11 +1.9 682,529 - Pf6N2E2_606 0.11 +1.0 682,529 - Pf6N2E2_606 0.11 -0.5 682,567 + Pf6N2E2_606 0.13 +0.5 682,567 + +1.4 682,567 + Pf6N2E2_606 0.13 +0.9 682,567 + Pf6N2E2_606 0.13 -0.5 682,567 + Pf6N2E2_606 0.13 +0.2 682,567 + Pf6N2E2_606 0.13 +1.0 682,568 - Pf6N2E2_606 0.13 +0.9 682,568 - Pf6N2E2_606 0.13 -0.8 682,568 - Pf6N2E2_606 0.13 -2.3 682,568 - Pf6N2E2_606 0.13 +0.6 682,568 - Pf6N2E2_606 0.13 -2.4 682,678 + Pf6N2E2_606 0.18 -1.0 682,679 - Pf6N2E2_606 0.18 +0.3 682,679 - Pf6N2E2_606 0.18 -0.2 682,679 - Pf6N2E2_606 0.18 -0.9 682,679 - Pf6N2E2_606 0.18 +1.3 682,681 - Pf6N2E2_606 0.18 +0.3
Or see this region's nucleotide sequence