Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4950

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4949 and Pf6N2E2_4950 are separated by 1 nucleotidesPf6N2E2_4950 and Pf6N2E2_4951 are separated by 201 nucleotidesPf6N2E2_4951 and Pf6N2E2_4952 are separated by 1 nucleotides Pf6N2E2_4949 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 5,704,984 to 5,705,916 _4949 Pf6N2E2_4950 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 5,705,918 to 5,706,538 _4950 Pf6N2E2_4951 - FIG00955422: hypothetical protein, at 5,706,740 to 5,707,183 _4951 Pf6N2E2_4952 - Ser/Thr and Tyr protein phosphatase (dual specificity), at 5,707,185 to 5,708,528 _4952 Position (kb) 5705 5706 5707Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5705.324 kb on + strand, within Pf6N2E2_4949at 5705.324 kb on + strand, within Pf6N2E2_4949at 5705.325 kb on - strand, within Pf6N2E2_4949at 5705.325 kb on - strand, within Pf6N2E2_4949at 5705.325 kb on - strand, within Pf6N2E2_4949at 5705.325 kb on - strand, within Pf6N2E2_4949at 5705.325 kb on - strandat 5705.325 kb on - strand, within Pf6N2E2_4949at 5705.325 kb on - strand, within Pf6N2E2_4949at 5705.325 kb on - strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strandat 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.543 kb on + strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.544 kb on - strand, within Pf6N2E2_4949at 5705.582 kb on + strand, within Pf6N2E2_4949at 5705.583 kb on - strand, within Pf6N2E2_4949at 5705.583 kb on - strand, within Pf6N2E2_4949at 5705.585 kb on + strand, within Pf6N2E2_4949at 5705.585 kb on + strand, within Pf6N2E2_4949at 5705.585 kb on + strand, within Pf6N2E2_4949at 5705.585 kb on + strand, within Pf6N2E2_4949at 5705.586 kb on - strand, within Pf6N2E2_4949at 5705.586 kb on - strand, within Pf6N2E2_4949at 5705.597 kb on + strand, within Pf6N2E2_4949at 5705.598 kb on - strand, within Pf6N2E2_4949at 5705.598 kb on - strand, within Pf6N2E2_4949at 5705.598 kb on - strand, within Pf6N2E2_4949at 5705.691 kb on - strand, within Pf6N2E2_4949at 5705.904 kb on + strandat 5705.904 kb on + strandat 5705.904 kb on + strandat 5705.904 kb on + strandat 5705.905 kb on - strandat 5705.905 kb on - strandat 5705.905 kb on - strandat 5706.029 kb on + strand, within Pf6N2E2_4950at 5706.029 kb on + strand, within Pf6N2E2_4950at 5706.045 kb on - strand, within Pf6N2E2_4950at 5706.132 kb on + strand, within Pf6N2E2_4950at 5706.132 kb on + strand, within Pf6N2E2_4950at 5706.132 kb on + strand, within Pf6N2E2_4950at 5706.133 kb on - strand, within Pf6N2E2_4950at 5706.133 kb on - strand, within Pf6N2E2_4950at 5706.133 kb on - strand, within Pf6N2E2_4950at 5706.246 kb on + strand, within Pf6N2E2_4950at 5706.247 kb on - strand, within Pf6N2E2_4950at 5706.247 kb on - strand, within Pf6N2E2_4950at 5706.306 kb on + strand, within Pf6N2E2_4950at 5706.307 kb on - strand, within Pf6N2E2_4950at 5706.307 kb on - strand, within Pf6N2E2_4950at 5706.307 kb on - strand, within Pf6N2E2_4950at 5706.307 kb on - strand, within Pf6N2E2_4950at 5706.307 kb on - strand, within Pf6N2E2_4950at 5706.432 kb on + strand, within Pf6N2E2_4950at 5706.433 kb on - strand, within Pf6N2E2_4950at 5706.433 kb on - strand, within Pf6N2E2_4950at 5706.597 kb on - strandat 5706.737 kb on + strandat 5706.737 kb on + strandat 5706.737 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.741 kb on + strandat 5706.742 kb on - strandat 5706.742 kb on - strandat 5706.745 kb on + strandat 5706.745 kb on + strandat 5706.745 kb on + strandat 5706.745 kb on + strandat 5706.746 kb on - strandat 5706.746 kb on - strandat 5706.755 kb on + strandat 5706.801 kb on - strand, within Pf6N2E2_4951at 5706.801 kb on - strand, within Pf6N2E2_4951at 5706.801 kb on - strand, within Pf6N2E2_4951at 5706.922 kb on + strand, within Pf6N2E2_4951at 5706.922 kb on + strand, within Pf6N2E2_4951at 5706.922 kb on + strand, within Pf6N2E2_4951at 5706.923 kb on - strand, within Pf6N2E2_4951at 5706.923 kb on - strand, within Pf6N2E2_4951at 5706.923 kb on - strand, within Pf6N2E2_4951at 5706.924 kb on + strand, within Pf6N2E2_4951at 5706.924 kb on + strand, within Pf6N2E2_4951at 5706.925 kb on - strand, within Pf6N2E2_4951at 5706.925 kb on - strand, within Pf6N2E2_4951at 5706.925 kb on - strand, within Pf6N2E2_4951at 5706.925 kb on - strand, within Pf6N2E2_4951at 5706.925 kb on - strand, within Pf6N2E2_4951at 5706.925 kb on - strand, within Pf6N2E2_4951at 5707.218 kb on + strandat 5707.535 kb on + strand, within Pf6N2E2_4952

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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5,705,324 + Pf6N2E2_4949 0.36 -0.6
5,705,324 + Pf6N2E2_4949 0.36 +0.8
5,705,325 - Pf6N2E2_4949 0.37 +0.1
5,705,325 - Pf6N2E2_4949 0.37 +0.5
5,705,325 - Pf6N2E2_4949 0.37 +1.6
5,705,325 - Pf6N2E2_4949 0.37 +0.5
5,705,325 - +1.7
5,705,325 - Pf6N2E2_4949 0.37 -0.1
5,705,325 - Pf6N2E2_4949 0.37 -0.6
5,705,325 - Pf6N2E2_4949 0.37 +1.4
5,705,543 + Pf6N2E2_4949 0.60 +1.0
5,705,543 + Pf6N2E2_4949 0.60 -0.1
5,705,543 + Pf6N2E2_4949 0.60 +1.4
5,705,543 + Pf6N2E2_4949 0.60 -0.8
5,705,543 + Pf6N2E2_4949 0.60 -1.1
5,705,543 + Pf6N2E2_4949 0.60 -0.8
5,705,543 + Pf6N2E2_4949 0.60 +1.0
5,705,543 + Pf6N2E2_4949 0.60 +1.3
5,705,543 + Pf6N2E2_4949 0.60 +0.1
5,705,543 + +0.1
5,705,543 + Pf6N2E2_4949 0.60 +0.5
5,705,543 + Pf6N2E2_4949 0.60 +0.9
5,705,543 + Pf6N2E2_4949 0.60 +0.7
5,705,544 - Pf6N2E2_4949 0.60 +1.2
5,705,544 - Pf6N2E2_4949 0.60 +0.0
5,705,544 - Pf6N2E2_4949 0.60 +1.0
5,705,544 - Pf6N2E2_4949 0.60 -0.3
5,705,544 - Pf6N2E2_4949 0.60 -0.1
5,705,544 - Pf6N2E2_4949 0.60 +0.4
5,705,544 - Pf6N2E2_4949 0.60 +0.2
5,705,544 - Pf6N2E2_4949 0.60 +2.1
5,705,544 - Pf6N2E2_4949 0.60 +1.2
5,705,544 - Pf6N2E2_4949 0.60 +0.3
5,705,544 - Pf6N2E2_4949 0.60 +0.1
5,705,582 + Pf6N2E2_4949 0.64 +0.2
5,705,583 - Pf6N2E2_4949 0.64 -1.7
5,705,583 - Pf6N2E2_4949 0.64 -0.5
5,705,585 + Pf6N2E2_4949 0.64 +1.7
5,705,585 + Pf6N2E2_4949 0.64 -1.0
5,705,585 + Pf6N2E2_4949 0.64 +1.2
5,705,585 + Pf6N2E2_4949 0.64 +0.9
5,705,586 - Pf6N2E2_4949 0.65 +0.8
5,705,586 - Pf6N2E2_4949 0.65 -0.2
5,705,597 + Pf6N2E2_4949 0.66 -3.7
5,705,598 - Pf6N2E2_4949 0.66 -0.5
5,705,598 - Pf6N2E2_4949 0.66 +0.2
5,705,598 - Pf6N2E2_4949 0.66 +0.4
5,705,691 - Pf6N2E2_4949 0.76 +0.6
5,705,904 + +1.7
5,705,904 + -0.1
5,705,904 + +0.1
5,705,904 + +0.4
5,705,905 - -0.1
5,705,905 - -1.6
5,705,905 - -0.2
5,706,029 + Pf6N2E2_4950 0.18 -0.7
5,706,029 + Pf6N2E2_4950 0.18 +0.4
5,706,045 - Pf6N2E2_4950 0.20 +0.1
5,706,132 + Pf6N2E2_4950 0.34 -0.6
5,706,132 + Pf6N2E2_4950 0.34 +0.2
5,706,132 + Pf6N2E2_4950 0.34 +1.7
5,706,133 - Pf6N2E2_4950 0.35 -0.2
5,706,133 - Pf6N2E2_4950 0.35 +1.3
5,706,133 - Pf6N2E2_4950 0.35 -1.6
5,706,246 + Pf6N2E2_4950 0.53 +0.5
5,706,247 - Pf6N2E2_4950 0.53 -1.2
5,706,247 - Pf6N2E2_4950 0.53 +1.0
5,706,306 + Pf6N2E2_4950 0.62 +0.4
5,706,307 - Pf6N2E2_4950 0.63 +0.8
5,706,307 - Pf6N2E2_4950 0.63 +1.9
5,706,307 - Pf6N2E2_4950 0.63 +0.9
5,706,307 - Pf6N2E2_4950 0.63 +0.3
5,706,307 - Pf6N2E2_4950 0.63 -0.9
5,706,432 + Pf6N2E2_4950 0.83 +0.8
5,706,433 - Pf6N2E2_4950 0.83 +1.0
5,706,433 - Pf6N2E2_4950 0.83 +0.4
5,706,597 - -1.1
5,706,737 + -0.2
5,706,737 + +0.5
5,706,737 + +0.2
5,706,741 + -0.0
5,706,741 + +0.4
5,706,741 + -0.1
5,706,741 + +0.6
5,706,741 + +0.6
5,706,741 + -0.9
5,706,741 + +0.3
5,706,741 + +0.1
5,706,741 + -1.3
5,706,742 - +1.0
5,706,742 - +1.0
5,706,745 + -0.0
5,706,745 + -2.1
5,706,745 + +0.0
5,706,745 + +0.6
5,706,746 - -0.6
5,706,746 - -1.1
5,706,755 + -0.5
5,706,801 - Pf6N2E2_4951 0.14 -1.2
5,706,801 - Pf6N2E2_4951 0.14 +0.1
5,706,801 - Pf6N2E2_4951 0.14 +1.1
5,706,922 + Pf6N2E2_4951 0.41 -1.0
5,706,922 + Pf6N2E2_4951 0.41 -0.1
5,706,922 + Pf6N2E2_4951 0.41 +0.1
5,706,923 - Pf6N2E2_4951 0.41 -0.2
5,706,923 - Pf6N2E2_4951 0.41 -0.5
5,706,923 - Pf6N2E2_4951 0.41 -0.3
5,706,924 + Pf6N2E2_4951 0.41 -1.1
5,706,924 + Pf6N2E2_4951 0.41 -0.1
5,706,925 - Pf6N2E2_4951 0.42 +1.4
5,706,925 - Pf6N2E2_4951 0.42 +0.0
5,706,925 - Pf6N2E2_4951 0.42 -0.2
5,706,925 - Pf6N2E2_4951 0.42 -1.4
5,706,925 - Pf6N2E2_4951 0.42 -0.1
5,706,925 - Pf6N2E2_4951 0.42 -0.2
5,707,218 + +1.1
5,707,535 + Pf6N2E2_4952 0.26 +0.5

Or see this region's nucleotide sequence