Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2086

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2085 and Pf6N2E2_2086 overlap by 4 nucleotidesPf6N2E2_2086 and Pf6N2E2_2087 are separated by 7 nucleotidesPf6N2E2_2087 and Pf6N2E2_2088 overlap by 1 nucleotides Pf6N2E2_2085 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 2,478,665 to 2,481,742 _2085 Pf6N2E2_2086 - DNA polymerase-like protein PA0670, at 2,481,739 to 2,483,160 _2086 Pf6N2E2_2087 - RecA/RadA recombinase, at 2,483,168 to 2,483,800 _2087 Pf6N2E2_2088 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 2,483,800 to 2,484,417 _2088 Position (kb) 2481 2482 2483 2484Strain fitness (log2 ratio) -2 -1 0 1 2at 2480.767 kb on + strand, within Pf6N2E2_2085at 2480.768 kb on - strand, within Pf6N2E2_2085at 2480.768 kb on - strand, within Pf6N2E2_2085at 2480.802 kb on - strand, within Pf6N2E2_2085at 2480.814 kb on + strand, within Pf6N2E2_2085at 2480.814 kb on + strand, within Pf6N2E2_2085at 2480.815 kb on - strand, within Pf6N2E2_2085at 2481.483 kb on + strandat 2481.719 kb on + strandat 2481.719 kb on + strandat 2481.719 kb on + strandat 2481.720 kb on - strandat 2481.720 kb on - strandat 2481.729 kb on + strandat 2481.729 kb on + strandat 2481.830 kb on + strandat 2481.830 kb on + strandat 2481.830 kb on + strandat 2481.830 kb on + strandat 2481.830 kb on + strandat 2481.831 kb on - strandat 2481.831 kb on - strandat 2481.831 kb on - strandat 2481.831 kb on - strandat 2481.833 kb on + strandat 2481.833 kb on + strandat 2481.833 kb on + strandat 2481.834 kb on - strandat 2481.834 kb on - strandat 2481.834 kb on - strandat 2482.427 kb on + strand, within Pf6N2E2_2086at 2482.427 kb on + strand, within Pf6N2E2_2086at 2482.427 kb on + strand, within Pf6N2E2_2086at 2482.427 kb on + strand, within Pf6N2E2_2086at 2482.427 kb on + strand, within Pf6N2E2_2086at 2482.427 kb on + strand, within Pf6N2E2_2086at 2482.428 kb on - strand, within Pf6N2E2_2086at 2482.428 kb on - strand, within Pf6N2E2_2086at 2482.428 kb on - strand, within Pf6N2E2_2086at 2482.428 kb on - strand, within Pf6N2E2_2086at 2482.428 kb on - strand, within Pf6N2E2_2086at 2482.570 kb on + strand, within Pf6N2E2_2086at 2482.570 kb on + strand, within Pf6N2E2_2086at 2482.703 kb on + strand, within Pf6N2E2_2086at 2482.703 kb on + strand, within Pf6N2E2_2086at 2482.703 kb on + strand, within Pf6N2E2_2086at 2482.703 kb on + strand, within Pf6N2E2_2086at 2482.703 kb on + strand, within Pf6N2E2_2086at 2482.703 kb on + strand, within Pf6N2E2_2086at 2482.858 kb on - strand, within Pf6N2E2_2086at 2482.858 kb on - strand, within Pf6N2E2_2086at 2482.858 kb on - strand, within Pf6N2E2_2086at 2482.947 kb on - strand, within Pf6N2E2_2086at 2483.074 kb on + strandat 2483.075 kb on - strandat 2483.145 kb on + strandat 2483.145 kb on + strandat 2483.146 kb on - strandat 2483.837 kb on - strandat 2484.065 kb on + strand, within Pf6N2E2_2088at 2484.065 kb on + strand, within Pf6N2E2_2088

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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2,480,767 + Pf6N2E2_2085 0.68 +0.8
2,480,768 - Pf6N2E2_2085 0.68 -0.2
2,480,768 - Pf6N2E2_2085 0.68 -0.1
2,480,802 - Pf6N2E2_2085 0.69 +0.4
2,480,814 + Pf6N2E2_2085 0.70 +1.2
2,480,814 + Pf6N2E2_2085 0.70 -0.6
2,480,815 - Pf6N2E2_2085 0.70 +1.1
2,481,483 + -0.4
2,481,719 + +0.6
2,481,719 + +0.3
2,481,719 + -0.0
2,481,720 - -1.1
2,481,720 - -0.4
2,481,729 + -1.3
2,481,729 + +0.5
2,481,830 + +0.5
2,481,830 + -1.2
2,481,830 + +1.3
2,481,830 + -0.3
2,481,830 + +0.6
2,481,831 - -0.8
2,481,831 - -0.0
2,481,831 - -0.4
2,481,831 - -0.2
2,481,833 + -0.4
2,481,833 + -0.0
2,481,833 + -0.6
2,481,834 - +0.2
2,481,834 - +0.1
2,481,834 - -0.1
2,482,427 + Pf6N2E2_2086 0.48 +0.7
2,482,427 + Pf6N2E2_2086 0.48 -0.7
2,482,427 + Pf6N2E2_2086 0.48 +0.1
2,482,427 + Pf6N2E2_2086 0.48 +0.5
2,482,427 + Pf6N2E2_2086 0.48 +0.5
2,482,427 + Pf6N2E2_2086 0.48 -0.3
2,482,428 - Pf6N2E2_2086 0.48 +0.7
2,482,428 - Pf6N2E2_2086 0.48 +1.0
2,482,428 - Pf6N2E2_2086 0.48 +1.9
2,482,428 - Pf6N2E2_2086 0.48 +1.6
2,482,428 - Pf6N2E2_2086 0.48 +0.2
2,482,570 + Pf6N2E2_2086 0.58 +0.1
2,482,570 + Pf6N2E2_2086 0.58 +0.5
2,482,703 + Pf6N2E2_2086 0.68 -0.6
2,482,703 + Pf6N2E2_2086 0.68 +1.4
2,482,703 + Pf6N2E2_2086 0.68 +0.3
2,482,703 + Pf6N2E2_2086 0.68 +0.3
2,482,703 + Pf6N2E2_2086 0.68 -0.5
2,482,703 + Pf6N2E2_2086 0.68 +0.5
2,482,858 - Pf6N2E2_2086 0.79 +0.9
2,482,858 - Pf6N2E2_2086 0.79 +0.7
2,482,858 - Pf6N2E2_2086 0.79 -0.7
2,482,947 - Pf6N2E2_2086 0.85 +0.3
2,483,074 + +0.1
2,483,075 - +0.9
2,483,145 + -2.2
2,483,145 + -2.4
2,483,146 - +0.4
2,483,837 - -0.3
2,484,065 + Pf6N2E2_2088 0.43 -0.9
2,484,065 + Pf6N2E2_2088 0.43 -0.9

Or see this region's nucleotide sequence