Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3443

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3441 and Pf6N2E2_3442 are separated by 139 nucleotidesPf6N2E2_3442 and Pf6N2E2_3443 are separated by 33 nucleotidesPf6N2E2_3443 and Pf6N2E2_3444 are separated by 82 nucleotides Pf6N2E2_3441 - Gluconate transporter family protein, at 4,010,266 to 4,011,615 _3441 Pf6N2E2_3442 - hypothetical protein, at 4,011,755 to 4,011,916 _3442 Pf6N2E2_3443 - Sulfate permease, at 4,011,950 to 4,013,395 _3443 Pf6N2E2_3444 - FIG00963086: hypothetical protein, at 4,013,478 to 4,014,371 _3444 Position (kb) 4011 4012 4013 4014Strain fitness (log2 ratio) -2 -1 0 1at 4011.017 kb on + strand, within Pf6N2E2_3441at 4011.065 kb on + strand, within Pf6N2E2_3441at 4011.065 kb on + strand, within Pf6N2E2_3441at 4011.447 kb on - strand, within Pf6N2E2_3441at 4011.447 kb on - strand, within Pf6N2E2_3441at 4011.447 kb on - strand, within Pf6N2E2_3441at 4011.447 kb on - strand, within Pf6N2E2_3441at 4011.620 kb on + strandat 4011.621 kb on - strandat 4011.621 kb on - strandat 4011.661 kb on + strandat 4011.701 kb on - strandat 4011.944 kb on + strandat 4011.944 kb on + strandat 4011.945 kb on - strandat 4011.945 kb on - strandat 4012.038 kb on + strandat 4012.039 kb on - strandat 4012.039 kb on - strandat 4012.190 kb on + strand, within Pf6N2E2_3443at 4012.190 kb on + strand, within Pf6N2E2_3443at 4012.191 kb on - strand, within Pf6N2E2_3443at 4012.382 kb on + strand, within Pf6N2E2_3443at 4012.382 kb on + strand, within Pf6N2E2_3443at 4012.383 kb on - strand, within Pf6N2E2_3443at 4012.383 kb on - strand, within Pf6N2E2_3443at 4012.431 kb on + strand, within Pf6N2E2_3443at 4012.497 kb on - strand, within Pf6N2E2_3443at 4013.151 kb on - strand, within Pf6N2E2_3443at 4013.306 kb on + strandat 4013.452 kb on + strandat 4013.453 kb on - strandat 4013.453 kb on - strandat 4013.453 kb on - strandat 4013.453 kb on - strandat 4013.587 kb on + strand, within Pf6N2E2_3444at 4013.587 kb on + strand, within Pf6N2E2_3444at 4013.587 kb on + strand, within Pf6N2E2_3444at 4013.587 kb on + strand, within Pf6N2E2_3444at 4013.588 kb on - strand, within Pf6N2E2_3444at 4013.588 kb on - strand, within Pf6N2E2_3444at 4013.588 kb on - strand, within Pf6N2E2_3444at 4013.588 kb on - strand, within Pf6N2E2_3444at 4013.588 kb on - strand, within Pf6N2E2_3444at 4013.588 kb on - strand, within Pf6N2E2_3444at 4013.588 kb on - strand, within Pf6N2E2_3444at 4013.719 kb on + strand, within Pf6N2E2_3444at 4013.719 kb on + strand, within Pf6N2E2_3444at 4013.758 kb on + strand, within Pf6N2E2_3444at 4013.758 kb on + strand, within Pf6N2E2_3444at 4013.758 kb on + strand, within Pf6N2E2_3444at 4013.759 kb on - strand, within Pf6N2E2_3444at 4013.761 kb on - strand, within Pf6N2E2_3444at 4013.837 kb on + strand, within Pf6N2E2_3444at 4013.902 kb on + strand, within Pf6N2E2_3444at 4013.902 kb on + strand, within Pf6N2E2_3444at 4013.903 kb on - strand, within Pf6N2E2_3444at 4013.903 kb on - strand, within Pf6N2E2_3444at 4013.903 kb on - strand, within Pf6N2E2_3444at 4014.022 kb on + strand, within Pf6N2E2_3444at 4014.023 kb on - strand, within Pf6N2E2_3444at 4014.023 kb on - strand, within Pf6N2E2_3444at 4014.133 kb on - strand, within Pf6N2E2_3444at 4014.363 kb on + strandat 4014.363 kb on + strandat 4014.363 kb on + strandat 4014.363 kb on + strandat 4014.364 kb on - strandat 4014.364 kb on - strandat 4014.364 kb on - strandat 4014.364 kb on - strandat 4014.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,011,017 + Pf6N2E2_3441 0.56 -0.2
4,011,065 + Pf6N2E2_3441 0.59 -0.9
4,011,065 + Pf6N2E2_3441 0.59 -0.4
4,011,447 - Pf6N2E2_3441 0.87 -0.9
4,011,447 - Pf6N2E2_3441 0.87 +0.1
4,011,447 - Pf6N2E2_3441 0.87 +0.0
4,011,447 - Pf6N2E2_3441 0.87 +0.2
4,011,620 + +0.1
4,011,621 - +0.4
4,011,621 - -0.4
4,011,661 + +0.1
4,011,701 - -1.5
4,011,944 + +0.8
4,011,944 + -1.8
4,011,945 - -0.3
4,011,945 - +0.4
4,012,038 + -0.7
4,012,039 - -0.1
4,012,039 - -0.7
4,012,190 + Pf6N2E2_3443 0.17 -0.5
4,012,190 + Pf6N2E2_3443 0.17 -1.6
4,012,191 - Pf6N2E2_3443 0.17 -0.6
4,012,382 + Pf6N2E2_3443 0.30 +0.3
4,012,382 + Pf6N2E2_3443 0.30 -0.3
4,012,383 - Pf6N2E2_3443 0.30 -0.0
4,012,383 - Pf6N2E2_3443 0.30 -1.4
4,012,431 + Pf6N2E2_3443 0.33 -1.4
4,012,497 - Pf6N2E2_3443 0.38 -2.2
4,013,151 - Pf6N2E2_3443 0.83 -0.7
4,013,306 + -0.4
4,013,452 + -0.4
4,013,453 - -1.2
4,013,453 - +0.4
4,013,453 - +0.1
4,013,453 - -1.0
4,013,587 + Pf6N2E2_3444 0.12 +0.3
4,013,587 + Pf6N2E2_3444 0.12 +0.2
4,013,587 + Pf6N2E2_3444 0.12 +1.3
4,013,587 + Pf6N2E2_3444 0.12 -1.2
4,013,588 - Pf6N2E2_3444 0.12 -0.9
4,013,588 - Pf6N2E2_3444 0.12 +0.4
4,013,588 - Pf6N2E2_3444 0.12 +0.0
4,013,588 - Pf6N2E2_3444 0.12 -1.2
4,013,588 - Pf6N2E2_3444 0.12 -0.3
4,013,588 - Pf6N2E2_3444 0.12 +0.5
4,013,588 - Pf6N2E2_3444 0.12 -2.1
4,013,719 + Pf6N2E2_3444 0.27 +1.0
4,013,719 + Pf6N2E2_3444 0.27 +0.8
4,013,758 + Pf6N2E2_3444 0.31 -1.6
4,013,758 + Pf6N2E2_3444 0.31 -0.5
4,013,758 + Pf6N2E2_3444 0.31 +0.3
4,013,759 - Pf6N2E2_3444 0.31 -0.3
4,013,761 - Pf6N2E2_3444 0.32 -0.1
4,013,837 + Pf6N2E2_3444 0.40 +0.6
4,013,902 + Pf6N2E2_3444 0.47 +0.8
4,013,902 + Pf6N2E2_3444 0.47 +0.4
4,013,903 - Pf6N2E2_3444 0.48 -0.6
4,013,903 - Pf6N2E2_3444 0.48 -0.9
4,013,903 - Pf6N2E2_3444 0.48 -0.9
4,014,022 + Pf6N2E2_3444 0.61 +0.3
4,014,023 - Pf6N2E2_3444 0.61 +0.2
4,014,023 - Pf6N2E2_3444 0.61 -0.8
4,014,133 - Pf6N2E2_3444 0.73 -0.5
4,014,363 + -0.3
4,014,363 + -0.9
4,014,363 + +0.6
4,014,363 + +0.8
4,014,364 - -2.4
4,014,364 - -0.6
4,014,364 - -0.7
4,014,364 - +0.1
4,014,364 - -0.0

Or see this region's nucleotide sequence