Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3441 and Pf6N2E2_3442 are separated by 139 nucleotides Pf6N2E2_3442 and Pf6N2E2_3443 are separated by 33 nucleotides Pf6N2E2_3443 and Pf6N2E2_3444 are separated by 82 nucleotides
Pf6N2E2_3441 - Gluconate transporter family protein, at 4,010,266 to 4,011,615
_3441
Pf6N2E2_3442 - hypothetical protein, at 4,011,755 to 4,011,916
_3442
Pf6N2E2_3443 - Sulfate permease, at 4,011,950 to 4,013,395
_3443
Pf6N2E2_3444 - FIG00963086: hypothetical protein, at 4,013,478 to 4,014,371
_3444
Position (kb)
4011
4012
4013
4014 Strain fitness (log2 ratio)
-2
-1
0
1 at 4011.017 kb on + strand, within Pf6N2E2_3441 at 4011.065 kb on + strand, within Pf6N2E2_3441 at 4011.065 kb on + strand, within Pf6N2E2_3441 at 4011.447 kb on - strand, within Pf6N2E2_3441 at 4011.447 kb on - strand, within Pf6N2E2_3441 at 4011.447 kb on - strand, within Pf6N2E2_3441 at 4011.447 kb on - strand, within Pf6N2E2_3441 at 4011.620 kb on + strand at 4011.621 kb on - strand at 4011.621 kb on - strand at 4011.661 kb on + strand at 4011.701 kb on - strand at 4011.944 kb on + strand at 4011.944 kb on + strand at 4011.945 kb on - strand at 4011.945 kb on - strand at 4012.038 kb on + strand at 4012.039 kb on - strand at 4012.039 kb on - strand at 4012.190 kb on + strand, within Pf6N2E2_3443 at 4012.190 kb on + strand, within Pf6N2E2_3443 at 4012.191 kb on - strand, within Pf6N2E2_3443 at 4012.382 kb on + strand, within Pf6N2E2_3443 at 4012.382 kb on + strand, within Pf6N2E2_3443 at 4012.383 kb on - strand, within Pf6N2E2_3443 at 4012.383 kb on - strand, within Pf6N2E2_3443 at 4012.431 kb on + strand, within Pf6N2E2_3443 at 4012.497 kb on - strand, within Pf6N2E2_3443 at 4013.151 kb on - strand, within Pf6N2E2_3443 at 4013.306 kb on + strand at 4013.452 kb on + strand at 4013.453 kb on - strand at 4013.453 kb on - strand at 4013.453 kb on - strand at 4013.453 kb on - strand at 4013.587 kb on + strand, within Pf6N2E2_3444 at 4013.587 kb on + strand, within Pf6N2E2_3444 at 4013.587 kb on + strand, within Pf6N2E2_3444 at 4013.587 kb on + strand, within Pf6N2E2_3444 at 4013.588 kb on - strand, within Pf6N2E2_3444 at 4013.588 kb on - strand, within Pf6N2E2_3444 at 4013.588 kb on - strand, within Pf6N2E2_3444 at 4013.588 kb on - strand, within Pf6N2E2_3444 at 4013.588 kb on - strand, within Pf6N2E2_3444 at 4013.588 kb on - strand, within Pf6N2E2_3444 at 4013.588 kb on - strand, within Pf6N2E2_3444 at 4013.719 kb on + strand, within Pf6N2E2_3444 at 4013.719 kb on + strand, within Pf6N2E2_3444 at 4013.758 kb on + strand, within Pf6N2E2_3444 at 4013.758 kb on + strand, within Pf6N2E2_3444 at 4013.758 kb on + strand, within Pf6N2E2_3444 at 4013.759 kb on - strand, within Pf6N2E2_3444 at 4013.761 kb on - strand, within Pf6N2E2_3444 at 4013.837 kb on + strand, within Pf6N2E2_3444 at 4013.902 kb on + strand, within Pf6N2E2_3444 at 4013.902 kb on + strand, within Pf6N2E2_3444 at 4013.903 kb on - strand, within Pf6N2E2_3444 at 4013.903 kb on - strand, within Pf6N2E2_3444 at 4013.903 kb on - strand, within Pf6N2E2_3444 at 4014.022 kb on + strand, within Pf6N2E2_3444 at 4014.023 kb on - strand, within Pf6N2E2_3444 at 4014.023 kb on - strand, within Pf6N2E2_3444 at 4014.133 kb on - strand, within Pf6N2E2_3444 at 4014.363 kb on + strand at 4014.363 kb on + strand at 4014.363 kb on + strand at 4014.363 kb on + strand at 4014.364 kb on - strand at 4014.364 kb on - strand at 4014.364 kb on - strand at 4014.364 kb on - strand at 4014.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,011,017 + Pf6N2E2_3441 0.56 -0.2 4,011,065 + Pf6N2E2_3441 0.59 -0.9 4,011,065 + Pf6N2E2_3441 0.59 -0.4 4,011,447 - Pf6N2E2_3441 0.87 -0.9 4,011,447 - Pf6N2E2_3441 0.87 +0.1 4,011,447 - Pf6N2E2_3441 0.87 +0.0 4,011,447 - Pf6N2E2_3441 0.87 +0.2 4,011,620 + +0.1 4,011,621 - +0.4 4,011,621 - -0.4 4,011,661 + +0.1 4,011,701 - -1.5 4,011,944 + +0.8 4,011,944 + -1.8 4,011,945 - -0.3 4,011,945 - +0.4 4,012,038 + -0.7 4,012,039 - -0.1 4,012,039 - -0.7 4,012,190 + Pf6N2E2_3443 0.17 -0.5 4,012,190 + Pf6N2E2_3443 0.17 -1.6 4,012,191 - Pf6N2E2_3443 0.17 -0.6 4,012,382 + Pf6N2E2_3443 0.30 +0.3 4,012,382 + Pf6N2E2_3443 0.30 -0.3 4,012,383 - Pf6N2E2_3443 0.30 -0.0 4,012,383 - Pf6N2E2_3443 0.30 -1.4 4,012,431 + Pf6N2E2_3443 0.33 -1.4 4,012,497 - Pf6N2E2_3443 0.38 -2.2 4,013,151 - Pf6N2E2_3443 0.83 -0.7 4,013,306 + -0.4 4,013,452 + -0.4 4,013,453 - -1.2 4,013,453 - +0.4 4,013,453 - +0.1 4,013,453 - -1.0 4,013,587 + Pf6N2E2_3444 0.12 +0.3 4,013,587 + Pf6N2E2_3444 0.12 +0.2 4,013,587 + Pf6N2E2_3444 0.12 +1.3 4,013,587 + Pf6N2E2_3444 0.12 -1.2 4,013,588 - Pf6N2E2_3444 0.12 -0.9 4,013,588 - Pf6N2E2_3444 0.12 +0.4 4,013,588 - Pf6N2E2_3444 0.12 +0.0 4,013,588 - Pf6N2E2_3444 0.12 -1.2 4,013,588 - Pf6N2E2_3444 0.12 -0.3 4,013,588 - Pf6N2E2_3444 0.12 +0.5 4,013,588 - Pf6N2E2_3444 0.12 -2.1 4,013,719 + Pf6N2E2_3444 0.27 +1.0 4,013,719 + Pf6N2E2_3444 0.27 +0.8 4,013,758 + Pf6N2E2_3444 0.31 -1.6 4,013,758 + Pf6N2E2_3444 0.31 -0.5 4,013,758 + Pf6N2E2_3444 0.31 +0.3 4,013,759 - Pf6N2E2_3444 0.31 -0.3 4,013,761 - Pf6N2E2_3444 0.32 -0.1 4,013,837 + Pf6N2E2_3444 0.40 +0.6 4,013,902 + Pf6N2E2_3444 0.47 +0.8 4,013,902 + Pf6N2E2_3444 0.47 +0.4 4,013,903 - Pf6N2E2_3444 0.48 -0.6 4,013,903 - Pf6N2E2_3444 0.48 -0.9 4,013,903 - Pf6N2E2_3444 0.48 -0.9 4,014,022 + Pf6N2E2_3444 0.61 +0.3 4,014,023 - Pf6N2E2_3444 0.61 +0.2 4,014,023 - Pf6N2E2_3444 0.61 -0.8 4,014,133 - Pf6N2E2_3444 0.73 -0.5 4,014,363 + -0.3 4,014,363 + -0.9 4,014,363 + +0.6 4,014,363 + +0.8 4,014,364 - -2.4 4,014,364 - -0.6 4,014,364 - -0.7 4,014,364 - +0.1 4,014,364 - -0.0
Or see this region's nucleotide sequence