Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1717

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1716 and Pf6N2E2_1717 are separated by 651 nucleotidesPf6N2E2_1717 and Pf6N2E2_1718 overlap by 4 nucleotides Pf6N2E2_1716 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 2,023,609 to 2,024,961 _1716 Pf6N2E2_1717 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 2,025,613 to 2,027,082 _1717 Pf6N2E2_1718 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27), at 2,027,079 to 2,027,663 _1718 Position (kb) 2025 2026 2027 2028Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2024.672 kb on + strand, within Pf6N2E2_1716at 2024.907 kb on - strandat 2025.025 kb on - strandat 2025.027 kb on - strandat 2025.093 kb on - strandat 2025.097 kb on - strandat 2025.109 kb on - strandat 2025.347 kb on + strandat 2025.606 kb on - strandat 2025.683 kb on + strandat 2025.685 kb on + strandat 2025.914 kb on + strand, within Pf6N2E2_1717at 2026.009 kb on + strand, within Pf6N2E2_1717at 2026.070 kb on - strand, within Pf6N2E2_1717at 2026.070 kb on - strand, within Pf6N2E2_1717at 2026.070 kb on - strand, within Pf6N2E2_1717at 2026.100 kb on - strand, within Pf6N2E2_1717at 2026.153 kb on - strand, within Pf6N2E2_1717at 2026.336 kb on + strand, within Pf6N2E2_1717at 2026.429 kb on + strand, within Pf6N2E2_1717at 2026.430 kb on - strand, within Pf6N2E2_1717at 2026.430 kb on - strand, within Pf6N2E2_1717at 2026.430 kb on - strand, within Pf6N2E2_1717at 2026.430 kb on - strand, within Pf6N2E2_1717at 2026.435 kb on + strand, within Pf6N2E2_1717at 2026.435 kb on + strand, within Pf6N2E2_1717at 2026.435 kb on + strand, within Pf6N2E2_1717at 2026.435 kb on + strand, within Pf6N2E2_1717at 2026.435 kb on + strand, within Pf6N2E2_1717at 2026.436 kb on - strand, within Pf6N2E2_1717at 2026.436 kb on - strand, within Pf6N2E2_1717at 2026.436 kb on - strand, within Pf6N2E2_1717at 2026.436 kb on - strand, within Pf6N2E2_1717at 2026.448 kb on + strand, within Pf6N2E2_1717at 2026.448 kb on + strand, within Pf6N2E2_1717at 2026.448 kb on + strand, within Pf6N2E2_1717at 2026.706 kb on - strand, within Pf6N2E2_1717at 2026.706 kb on - strand, within Pf6N2E2_1717at 2026.717 kb on + strand, within Pf6N2E2_1717at 2026.718 kb on - strand, within Pf6N2E2_1717at 2026.873 kb on + strand, within Pf6N2E2_1717at 2026.874 kb on - strand, within Pf6N2E2_1717at 2026.874 kb on - strand, within Pf6N2E2_1717at 2026.956 kb on + strandat 2026.957 kb on - strandat 2026.960 kb on + strandat 2026.960 kb on + strandat 2026.961 kb on - strandat 2027.029 kb on + strandat 2027.030 kb on - strandat 2027.030 kb on - strandat 2027.030 kb on - strandat 2027.030 kb on - strandat 2027.086 kb on + strandat 2027.087 kb on - strandat 2027.134 kb on - strandat 2027.265 kb on + strand, within Pf6N2E2_1718at 2027.539 kb on - strand, within Pf6N2E2_1718at 2027.539 kb on - strand, within Pf6N2E2_1718at 2027.723 kb on + strandat 2027.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,024,672 + Pf6N2E2_1716 0.79 +1.4
2,024,907 - +0.3
2,025,025 - -1.2
2,025,027 - -0.1
2,025,093 - -0.8
2,025,097 - -0.1
2,025,109 - -0.6
2,025,347 + -0.5
2,025,606 - +0.3
2,025,683 + -0.9
2,025,685 + -2.6
2,025,914 + Pf6N2E2_1717 0.20 -1.7
2,026,009 + Pf6N2E2_1717 0.27 -0.9
2,026,070 - Pf6N2E2_1717 0.31 -0.9
2,026,070 - Pf6N2E2_1717 0.31 -1.4
2,026,070 - Pf6N2E2_1717 0.31 -0.9
2,026,100 - Pf6N2E2_1717 0.33 -1.0
2,026,153 - Pf6N2E2_1717 0.37 -1.6
2,026,336 + Pf6N2E2_1717 0.49 -1.1
2,026,429 + Pf6N2E2_1717 0.56 -1.2
2,026,430 - Pf6N2E2_1717 0.56 -2.1
2,026,430 - Pf6N2E2_1717 0.56 -2.1
2,026,430 - Pf6N2E2_1717 0.56 -2.0
2,026,430 - Pf6N2E2_1717 0.56 -2.6
2,026,435 + Pf6N2E2_1717 0.56 +2.0
2,026,435 + Pf6N2E2_1717 0.56 -2.7
2,026,435 + Pf6N2E2_1717 0.56 -0.6
2,026,435 + Pf6N2E2_1717 0.56 -2.6
2,026,435 + Pf6N2E2_1717 0.56 -0.8
2,026,436 - Pf6N2E2_1717 0.56 -0.9
2,026,436 - Pf6N2E2_1717 0.56 -3.5
2,026,436 - Pf6N2E2_1717 0.56 -1.9
2,026,436 - Pf6N2E2_1717 0.56 -1.4
2,026,448 + Pf6N2E2_1717 0.57 -0.6
2,026,448 + Pf6N2E2_1717 0.57 -0.9
2,026,448 + Pf6N2E2_1717 0.57 -2.9
2,026,706 - Pf6N2E2_1717 0.74 -0.3
2,026,706 - Pf6N2E2_1717 0.74 -1.6
2,026,717 + Pf6N2E2_1717 0.75 -1.5
2,026,718 - Pf6N2E2_1717 0.75 -1.6
2,026,873 + Pf6N2E2_1717 0.86 -2.6
2,026,874 - Pf6N2E2_1717 0.86 -1.1
2,026,874 - Pf6N2E2_1717 0.86 -1.1
2,026,956 + -0.6
2,026,957 - -1.3
2,026,960 + -2.1
2,026,960 + -1.3
2,026,961 - -0.8
2,027,029 + -3.6
2,027,030 - -1.3
2,027,030 - -1.6
2,027,030 - -3.0
2,027,030 - +0.4
2,027,086 + -1.7
2,027,087 - +2.0
2,027,134 - -0.5
2,027,265 + Pf6N2E2_1718 0.32 -1.5
2,027,539 - Pf6N2E2_1718 0.79 -0.8
2,027,539 - Pf6N2E2_1718 0.79 +0.0
2,027,723 + +1.0
2,027,723 + -0.3

Or see this region's nucleotide sequence