Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_61

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_60 and Pf6N2E2_61 are separated by 69 nucleotidesPf6N2E2_61 and Pf6N2E2_62 overlap by 31 nucleotidesPf6N2E2_62 and Pf6N2E2_63 are separated by 157 nucleotides Pf6N2E2_60 - Sensory box/GGDEF family protein, at 98,612 to 101,890 _60 Pf6N2E2_61 - Cys regulon transcriptional activator CysB, at 101,960 to 102,238 _61 Pf6N2E2_62 - Cys regulon transcriptional activator CysB, at 102,208 to 102,852 _62 Pf6N2E2_63 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 103,010 to 104,428 _63 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 101.101 kb on + strand, within Pf6N2E2_60at 101.101 kb on + strand, within Pf6N2E2_60at 101.241 kb on - strand, within Pf6N2E2_60at 101.331 kb on + strand, within Pf6N2E2_60at 101.649 kb on - strandat 101.661 kb on + strandat 101.662 kb on - strandat 101.662 kb on - strandat 101.891 kb on + strandat 101.921 kb on + strandat 101.922 kb on - strandat 101.961 kb on + strandat 101.961 kb on + strandat 101.961 kb on + strandat 101.961 kb on + strandat 101.961 kb on + strandat 101.962 kb on - strandat 102.052 kb on + strand, within Pf6N2E2_61at 102.052 kb on + strand, within Pf6N2E2_61at 102.052 kb on + strand, within Pf6N2E2_61at 102.052 kb on + strand, within Pf6N2E2_61at 102.052 kb on + strand, within Pf6N2E2_61at 102.052 kb on + strand, within Pf6N2E2_61at 102.052 kb on + strand, within Pf6N2E2_61at 102.052 kb on + strand, within Pf6N2E2_61at 102.053 kb on - strand, within Pf6N2E2_61at 102.053 kb on - strand, within Pf6N2E2_61at 102.053 kb on - strand, within Pf6N2E2_61at 102.053 kb on - strand, within Pf6N2E2_61at 102.053 kb on - strand, within Pf6N2E2_61at 102.054 kb on + strand, within Pf6N2E2_61at 102.054 kb on + strand, within Pf6N2E2_61at 102.054 kb on + strand, within Pf6N2E2_61at 102.055 kb on - strand, within Pf6N2E2_61at 102.055 kb on - strand, within Pf6N2E2_61at 102.055 kb on - strand, within Pf6N2E2_61at 102.055 kb on - strand, within Pf6N2E2_61at 102.059 kb on + strand, within Pf6N2E2_61at 102.059 kb on + strand, within Pf6N2E2_61at 102.060 kb on - strand, within Pf6N2E2_61at 102.060 kb on - strand, within Pf6N2E2_61at 102.077 kb on + strand, within Pf6N2E2_61at 102.077 kb on + strand, within Pf6N2E2_61at 102.077 kb on + strand, within Pf6N2E2_61at 102.077 kb on + strand, within Pf6N2E2_61at 102.078 kb on - strand, within Pf6N2E2_61at 102.168 kb on - strand, within Pf6N2E2_61at 102.180 kb on + strand, within Pf6N2E2_61at 102.250 kb on + strandat 102.393 kb on - strandat 102.455 kb on + strand, within Pf6N2E2_62at 102.550 kb on + strand, within Pf6N2E2_62at 102.550 kb on + strand, within Pf6N2E2_62at 102.551 kb on - strand, within Pf6N2E2_62at 102.551 kb on - strand, within Pf6N2E2_62at 102.551 kb on - strand, within Pf6N2E2_62at 102.551 kb on - strand, within Pf6N2E2_62at 102.823 kb on + strandat 102.824 kb on - strandat 102.824 kb on - strandat 102.824 kb on - strandat 102.824 kb on - strandat 102.825 kb on + strandat 102.825 kb on + strandat 102.825 kb on + strandat 102.825 kb on + strandat 102.826 kb on - strandat 102.826 kb on - strandat 102.920 kb on + strandat 102.921 kb on - strandat 102.929 kb on - strandat 102.955 kb on + strandat 102.981 kb on + strandat 102.982 kb on - strandat 103.028 kb on + strandat 103.028 kb on + strandat 103.088 kb on + strandat 103.088 kb on + strandat 103.088 kb on + strandat 103.206 kb on + strand, within Pf6N2E2_63at 103.207 kb on - strand, within Pf6N2E2_63

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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101,101 + Pf6N2E2_60 0.76 +0.2
101,101 + Pf6N2E2_60 0.76 -1.2
101,241 - Pf6N2E2_60 0.80 -1.5
101,331 + Pf6N2E2_60 0.83 +1.5
101,649 - -1.0
101,661 + +1.8
101,662 - +0.1
101,662 - +0.8
101,891 + +0.5
101,921 + +0.7
101,922 - +1.2
101,961 + +0.4
101,961 + -0.2
101,961 + +0.1
101,961 + +0.2
101,961 + +0.7
101,962 - +2.2
102,052 + Pf6N2E2_61 0.33 +1.4
102,052 + Pf6N2E2_61 0.33 +0.6
102,052 + Pf6N2E2_61 0.33 -0.1
102,052 + Pf6N2E2_61 0.33 +0.0
102,052 + Pf6N2E2_61 0.33 +0.2
102,052 + Pf6N2E2_61 0.33 +1.7
102,052 + Pf6N2E2_61 0.33 -0.9
102,052 + Pf6N2E2_61 0.33 +0.1
102,053 - Pf6N2E2_61 0.33 +1.9
102,053 - Pf6N2E2_61 0.33 +1.0
102,053 - Pf6N2E2_61 0.33 +1.8
102,053 - Pf6N2E2_61 0.33 +2.0
102,053 - Pf6N2E2_61 0.33 +2.2
102,054 + Pf6N2E2_61 0.34 +1.0
102,054 + Pf6N2E2_61 0.34 +0.6
102,054 + Pf6N2E2_61 0.34 +0.5
102,055 - Pf6N2E2_61 0.34 +0.5
102,055 - Pf6N2E2_61 0.34 +0.6
102,055 - Pf6N2E2_61 0.34 +1.1
102,055 - Pf6N2E2_61 0.34 +2.0
102,059 + Pf6N2E2_61 0.35 -0.4
102,059 + Pf6N2E2_61 0.35 +1.0
102,060 - Pf6N2E2_61 0.36 +1.7
102,060 - Pf6N2E2_61 0.36 +1.0
102,077 + Pf6N2E2_61 0.42 +2.0
102,077 + Pf6N2E2_61 0.42 -0.1
102,077 + Pf6N2E2_61 0.42 +0.9
102,077 + Pf6N2E2_61 0.42 +0.4
102,078 - Pf6N2E2_61 0.42 +1.4
102,168 - Pf6N2E2_61 0.75 +1.9
102,180 + Pf6N2E2_61 0.79 +1.6
102,250 + +0.8
102,393 - +0.2
102,455 + Pf6N2E2_62 0.38 +0.2
102,550 + Pf6N2E2_62 0.53 +1.3
102,550 + Pf6N2E2_62 0.53 +0.2
102,551 - Pf6N2E2_62 0.53 -0.2
102,551 - Pf6N2E2_62 0.53 -0.6
102,551 - Pf6N2E2_62 0.53 -1.1
102,551 - Pf6N2E2_62 0.53 -0.0
102,823 + +1.4
102,824 - -0.9
102,824 - +0.7
102,824 - +1.2
102,824 - -2.2
102,825 + +0.8
102,825 + +0.8
102,825 + +1.1
102,825 + +1.3
102,826 - -2.5
102,826 - -1.0
102,920 + +2.7
102,921 - -0.5
102,929 - -2.1
102,955 + -2.1
102,981 + -2.6
102,982 - -0.5
103,028 + -3.3
103,028 + -3.0
103,088 + -3.0
103,088 + -2.0
103,088 + -1.7
103,206 + Pf6N2E2_63 0.14 -1.8
103,207 - Pf6N2E2_63 0.14 -1.3

Or see this region's nucleotide sequence