Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6027 and Pf6N2E2_6028 are separated by 339 nucleotides Pf6N2E2_6028 and Pf6N2E2_6029 are separated by 14 nucleotides Pf6N2E2_6029 and Pf6N2E2_6030 overlap by 10 nucleotides Pf6N2E2_6030 and Pf6N2E2_6031 are separated by 185 nucleotides Pf6N2E2_6031 and Pf6N2E2_6032 are separated by 161 nucleotides
Pf6N2E2_6027 - hypothetical protein, at 6,845,334 to 6,846,344
_6027
Pf6N2E2_6028 - hypothetical protein, at 6,846,684 to 6,846,821
_6028
Pf6N2E2_6029 - hypothetical protein, at 6,846,836 to 6,847,201
_6029
Pf6N2E2_6030 - Diaminopimelate epimerase (EC 5.1.1.7), at 6,847,192 to 6,847,995
_6030
Pf6N2E2_6031 - hypothetical protein, at 6,848,181 to 6,848,705
_6031
Pf6N2E2_6032 - acetyltransferase, GNAT family, at 6,848,867 to 6,849,340
_6032
Position (kb)
6847
6848 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6846.461 kb on + strand at 6846.461 kb on + strand at 6846.462 kb on - strand at 6846.747 kb on + strand, within Pf6N2E2_6028 at 6846.866 kb on + strand at 6846.866 kb on + strand at 6846.866 kb on + strand at 6846.866 kb on + strand at 6846.866 kb on + strand at 6846.867 kb on - strand at 6846.867 kb on - strand at 6847.003 kb on + strand, within Pf6N2E2_6029 at 6847.004 kb on - strand, within Pf6N2E2_6029 at 6847.004 kb on - strand, within Pf6N2E2_6029 at 6847.013 kb on - strand, within Pf6N2E2_6029 at 6847.127 kb on + strand, within Pf6N2E2_6029 at 6847.510 kb on - strand, within Pf6N2E2_6030 at 6847.654 kb on + strand, within Pf6N2E2_6030 at 6847.654 kb on + strand, within Pf6N2E2_6030 at 6847.654 kb on + strand, within Pf6N2E2_6030 at 6847.655 kb on - strand, within Pf6N2E2_6030 at 6847.773 kb on + strand, within Pf6N2E2_6030 at 6847.774 kb on - strand, within Pf6N2E2_6030 at 6848.083 kb on + strand at 6848.192 kb on + strand at 6848.193 kb on - strand at 6848.274 kb on - strand, within Pf6N2E2_6031 at 6848.317 kb on + strand, within Pf6N2E2_6031 at 6848.318 kb on - strand, within Pf6N2E2_6031 at 6848.318 kb on - strand, within Pf6N2E2_6031 at 6848.318 kb on - strand, within Pf6N2E2_6031 at 6848.369 kb on - strand, within Pf6N2E2_6031 at 6848.369 kb on - strand, within Pf6N2E2_6031 at 6848.551 kb on + strand, within Pf6N2E2_6031 at 6848.551 kb on + strand, within Pf6N2E2_6031 at 6848.741 kb on + strand at 6848.741 kb on + strand at 6848.742 kb on - strand at 6848.742 kb on - strand at 6848.820 kb on + strand at 6848.820 kb on + strand at 6848.821 kb on - strand at 6848.821 kb on - strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.824 kb on + strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.825 kb on - strand at 6848.847 kb on + strand at 6848.847 kb on + strand at 6848.847 kb on + strand at 6848.893 kb on + strand at 6848.893 kb on + strand at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.926 kb on + strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032 at 6848.927 kb on - strand, within Pf6N2E2_6032
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 6,846,461 + +0.2 6,846,461 + -0.4 6,846,462 - -2.7 6,846,747 + Pf6N2E2_6028 0.46 +1.7 6,846,866 + -0.4 6,846,866 + -1.9 6,846,866 + +0.9 6,846,866 + +2.4 6,846,866 + -1.6 6,846,867 - +0.9 6,846,867 - -2.2 6,847,003 + Pf6N2E2_6029 0.46 -0.4 6,847,004 - Pf6N2E2_6029 0.46 +0.7 6,847,004 - Pf6N2E2_6029 0.46 +0.5 6,847,013 - Pf6N2E2_6029 0.48 +0.2 6,847,127 + Pf6N2E2_6029 0.80 +2.6 6,847,510 - Pf6N2E2_6030 0.40 -0.8 6,847,654 + Pf6N2E2_6030 0.57 -0.8 6,847,654 + Pf6N2E2_6030 0.57 +1.0 6,847,654 + Pf6N2E2_6030 0.57 -0.3 6,847,655 - Pf6N2E2_6030 0.58 +0.5 6,847,773 + Pf6N2E2_6030 0.72 -1.3 6,847,774 - Pf6N2E2_6030 0.72 +1.5 6,848,083 + +0.5 6,848,192 + +0.9 6,848,193 - +1.4 6,848,274 - Pf6N2E2_6031 0.18 +0.4 6,848,317 + Pf6N2E2_6031 0.26 +0.3 6,848,318 - Pf6N2E2_6031 0.26 -2.2 6,848,318 - Pf6N2E2_6031 0.26 +1.2 6,848,318 - Pf6N2E2_6031 0.26 +1.9 6,848,369 - Pf6N2E2_6031 0.36 +1.2 6,848,369 - Pf6N2E2_6031 0.36 +0.7 6,848,551 + Pf6N2E2_6031 0.70 -0.4 6,848,551 + Pf6N2E2_6031 0.70 -0.9 6,848,741 + +0.4 6,848,741 + -0.2 6,848,742 - +0.4 6,848,742 - +1.1 6,848,820 + -0.9 6,848,820 + +1.9 6,848,821 - +2.9 6,848,821 - -1.1 6,848,824 + +0.4 6,848,824 + -1.8 6,848,824 + +0.6 6,848,824 + -2.7 6,848,824 + +0.9 6,848,824 + -0.2 6,848,824 + -0.2 6,848,824 + +1.4 6,848,824 + -1.7 6,848,824 + -0.3 6,848,825 - +0.4 6,848,825 - +0.9 6,848,825 - -0.4 6,848,825 - +0.5 6,848,825 - +1.3 6,848,825 - +1.2 6,848,825 - -0.9 6,848,825 - -0.4 6,848,825 - -1.7 6,848,825 - +1.5 6,848,825 - +0.9 6,848,847 + +0.1 6,848,847 + +0.6 6,848,847 + -1.4 6,848,893 + -0.7 6,848,893 + +0.3 6,848,926 + Pf6N2E2_6032 0.12 +0.2 6,848,926 + Pf6N2E2_6032 0.12 -0.4 6,848,926 + Pf6N2E2_6032 0.12 +0.1 6,848,927 - Pf6N2E2_6032 0.13 -0.1 6,848,927 - Pf6N2E2_6032 0.13 +2.9 6,848,927 - Pf6N2E2_6032 0.13 -0.1
Or see this region's nucleotide sequence