Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6030

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6027 and Pf6N2E2_6028 are separated by 339 nucleotidesPf6N2E2_6028 and Pf6N2E2_6029 are separated by 14 nucleotidesPf6N2E2_6029 and Pf6N2E2_6030 overlap by 10 nucleotidesPf6N2E2_6030 and Pf6N2E2_6031 are separated by 185 nucleotidesPf6N2E2_6031 and Pf6N2E2_6032 are separated by 161 nucleotides Pf6N2E2_6027 - hypothetical protein, at 6,845,334 to 6,846,344 _6027 Pf6N2E2_6028 - hypothetical protein, at 6,846,684 to 6,846,821 _6028 Pf6N2E2_6029 - hypothetical protein, at 6,846,836 to 6,847,201 _6029 Pf6N2E2_6030 - Diaminopimelate epimerase (EC 5.1.1.7), at 6,847,192 to 6,847,995 _6030 Pf6N2E2_6031 - hypothetical protein, at 6,848,181 to 6,848,705 _6031 Pf6N2E2_6032 - acetyltransferase, GNAT family, at 6,848,867 to 6,849,340 _6032 Position (kb) 6847 6848Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6846.461 kb on + strandat 6846.461 kb on + strandat 6846.462 kb on - strandat 6846.747 kb on + strand, within Pf6N2E2_6028at 6846.866 kb on + strandat 6846.866 kb on + strandat 6846.866 kb on + strandat 6846.866 kb on + strandat 6846.866 kb on + strandat 6846.867 kb on - strandat 6846.867 kb on - strandat 6847.003 kb on + strand, within Pf6N2E2_6029at 6847.004 kb on - strand, within Pf6N2E2_6029at 6847.004 kb on - strand, within Pf6N2E2_6029at 6847.013 kb on - strand, within Pf6N2E2_6029at 6847.127 kb on + strand, within Pf6N2E2_6029at 6847.510 kb on - strand, within Pf6N2E2_6030at 6847.654 kb on + strand, within Pf6N2E2_6030at 6847.654 kb on + strand, within Pf6N2E2_6030at 6847.654 kb on + strand, within Pf6N2E2_6030at 6847.655 kb on - strand, within Pf6N2E2_6030at 6847.773 kb on + strand, within Pf6N2E2_6030at 6847.774 kb on - strand, within Pf6N2E2_6030at 6848.083 kb on + strandat 6848.192 kb on + strandat 6848.193 kb on - strandat 6848.274 kb on - strand, within Pf6N2E2_6031at 6848.317 kb on + strand, within Pf6N2E2_6031at 6848.318 kb on - strand, within Pf6N2E2_6031at 6848.318 kb on - strand, within Pf6N2E2_6031at 6848.318 kb on - strand, within Pf6N2E2_6031at 6848.369 kb on - strand, within Pf6N2E2_6031at 6848.369 kb on - strand, within Pf6N2E2_6031at 6848.551 kb on + strand, within Pf6N2E2_6031at 6848.551 kb on + strand, within Pf6N2E2_6031at 6848.741 kb on + strandat 6848.741 kb on + strandat 6848.742 kb on - strandat 6848.742 kb on - strandat 6848.820 kb on + strandat 6848.820 kb on + strandat 6848.821 kb on - strandat 6848.821 kb on - strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.847 kb on + strandat 6848.847 kb on + strandat 6848.847 kb on + strandat 6848.893 kb on + strandat 6848.893 kb on + strandat 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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6,846,461 + +0.2
6,846,461 + -0.4
6,846,462 - -2.7
6,846,747 + Pf6N2E2_6028 0.46 +1.7
6,846,866 + -0.4
6,846,866 + -1.9
6,846,866 + +0.9
6,846,866 + +2.4
6,846,866 + -1.6
6,846,867 - +0.9
6,846,867 - -2.2
6,847,003 + Pf6N2E2_6029 0.46 -0.4
6,847,004 - Pf6N2E2_6029 0.46 +0.7
6,847,004 - Pf6N2E2_6029 0.46 +0.5
6,847,013 - Pf6N2E2_6029 0.48 +0.2
6,847,127 + Pf6N2E2_6029 0.80 +2.6
6,847,510 - Pf6N2E2_6030 0.40 -0.8
6,847,654 + Pf6N2E2_6030 0.57 -0.8
6,847,654 + Pf6N2E2_6030 0.57 +1.0
6,847,654 + Pf6N2E2_6030 0.57 -0.3
6,847,655 - Pf6N2E2_6030 0.58 +0.5
6,847,773 + Pf6N2E2_6030 0.72 -1.3
6,847,774 - Pf6N2E2_6030 0.72 +1.5
6,848,083 + +0.5
6,848,192 + +0.9
6,848,193 - +1.4
6,848,274 - Pf6N2E2_6031 0.18 +0.4
6,848,317 + Pf6N2E2_6031 0.26 +0.3
6,848,318 - Pf6N2E2_6031 0.26 -2.2
6,848,318 - Pf6N2E2_6031 0.26 +1.2
6,848,318 - Pf6N2E2_6031 0.26 +1.9
6,848,369 - Pf6N2E2_6031 0.36 +1.2
6,848,369 - Pf6N2E2_6031 0.36 +0.7
6,848,551 + Pf6N2E2_6031 0.70 -0.4
6,848,551 + Pf6N2E2_6031 0.70 -0.9
6,848,741 + +0.4
6,848,741 + -0.2
6,848,742 - +0.4
6,848,742 - +1.1
6,848,820 + -0.9
6,848,820 + +1.9
6,848,821 - +2.9
6,848,821 - -1.1
6,848,824 + +0.4
6,848,824 + -1.8
6,848,824 + +0.6
6,848,824 + -2.7
6,848,824 + +0.9
6,848,824 + -0.2
6,848,824 + -0.2
6,848,824 + +1.4
6,848,824 + -1.7
6,848,824 + -0.3
6,848,825 - +0.4
6,848,825 - +0.9
6,848,825 - -0.4
6,848,825 - +0.5
6,848,825 - +1.3
6,848,825 - +1.2
6,848,825 - -0.9
6,848,825 - -0.4
6,848,825 - -1.7
6,848,825 - +1.5
6,848,825 - +0.9
6,848,847 + +0.1
6,848,847 + +0.6
6,848,847 + -1.4
6,848,893 + -0.7
6,848,893 + +0.3
6,848,926 + Pf6N2E2_6032 0.12 +0.2
6,848,926 + Pf6N2E2_6032 0.12 -0.4
6,848,926 + Pf6N2E2_6032 0.12 +0.1
6,848,927 - Pf6N2E2_6032 0.13 -0.1
6,848,927 - Pf6N2E2_6032 0.13 +2.9
6,848,927 - Pf6N2E2_6032 0.13 -0.1

Or see this region's nucleotide sequence