Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6022

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6020 and Pf6N2E2_6021 are separated by 144 nucleotidesPf6N2E2_6021 and Pf6N2E2_6022 overlap by 11 nucleotidesPf6N2E2_6022 and Pf6N2E2_6023 are separated by 4 nucleotides Pf6N2E2_6020 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 6,840,119 to 6,841,075 _6020 Pf6N2E2_6021 - RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE), at 6,841,220 to 6,841,507 _6021 Pf6N2E2_6022 - StbE replicon stabilization toxin, at 6,841,497 to 6,841,808 _6022 Pf6N2E2_6023 - Putative cytoplasmic protein, at 6,841,813 to 6,842,451 _6023 Position (kb) 6841 6842Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6840.647 kb on + strand, within Pf6N2E2_6020at 6840.647 kb on + strand, within Pf6N2E2_6020at 6840.647 kb on + strand, within Pf6N2E2_6020at 6840.647 kb on + strand, within Pf6N2E2_6020at 6840.647 kb on + strand, within Pf6N2E2_6020at 6840.807 kb on - strand, within Pf6N2E2_6020at 6841.033 kb on + strandat 6841.034 kb on - strandat 6841.034 kb on - strandat 6841.034 kb on - strandat 6841.135 kb on + strandat 6841.135 kb on + strandat 6841.135 kb on + strandat 6841.135 kb on + strandat 6841.135 kb on + strandat 6841.135 kb on + strandat 6841.135 kb on + strandat 6841.136 kb on - strandat 6841.198 kb on + strandat 6841.198 kb on + strandat 6841.509 kb on + strandat 6841.509 kb on + strandat 6841.509 kb on + strandat 6841.509 kb on + strandat 6841.509 kb on + strandat 6841.653 kb on + strand, within Pf6N2E2_6022at 6841.653 kb on + strand, within Pf6N2E2_6022at 6841.692 kb on + strand, within Pf6N2E2_6022at 6841.787 kb on + strandat 6841.788 kb on - strandat 6841.865 kb on + strandat 6841.866 kb on - strandat 6841.866 kb on - strandat 6841.866 kb on - strandat 6841.866 kb on - strandat 6841.928 kb on - strand, within Pf6N2E2_6023at 6842.161 kb on - strand, within Pf6N2E2_6023at 6842.161 kb on - strand, within Pf6N2E2_6023at 6842.194 kb on - strand, within Pf6N2E2_6023at 6842.199 kb on + strand, within Pf6N2E2_6023at 6842.199 kb on + strand, within Pf6N2E2_6023at 6842.200 kb on - strand, within Pf6N2E2_6023at 6842.218 kb on + strand, within Pf6N2E2_6023at 6842.219 kb on - strand, within Pf6N2E2_6023at 6842.332 kb on + strand, within Pf6N2E2_6023at 6842.333 kb on - strand, within Pf6N2E2_6023at 6842.362 kb on + strand, within Pf6N2E2_6023at 6842.393 kb on - strandat 6842.523 kb on - strandat 6842.556 kb on + strandat 6842.559 kb on - strandat 6842.686 kb on + strandat 6842.686 kb on + strandat 6842.687 kb on - strandat 6842.705 kb on + strandat 6842.705 kb on + strandat 6842.707 kb on + strandat 6842.707 kb on + strandat 6842.707 kb on + strandat 6842.708 kb on - strandat 6842.708 kb on - strandat 6842.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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6,840,647 + Pf6N2E2_6020 0.55 +0.1
6,840,647 + Pf6N2E2_6020 0.55 +1.7
6,840,647 + Pf6N2E2_6020 0.55 -1.8
6,840,647 + Pf6N2E2_6020 0.55 -1.1
6,840,647 + Pf6N2E2_6020 0.55 +1.0
6,840,807 - Pf6N2E2_6020 0.72 -0.7
6,841,033 + -0.0
6,841,034 - -1.4
6,841,034 - -0.4
6,841,034 - -0.6
6,841,135 + +1.2
6,841,135 + +0.2
6,841,135 + -0.7
6,841,135 + +1.0
6,841,135 + +1.2
6,841,135 + +0.1
6,841,135 + +0.5
6,841,136 - +1.6
6,841,198 + +0.4
6,841,198 + +2.5
6,841,509 + -1.1
6,841,509 + -2.5
6,841,509 + -0.2
6,841,509 + +0.6
6,841,509 + +1.6
6,841,653 + Pf6N2E2_6022 0.50 -0.2
6,841,653 + Pf6N2E2_6022 0.50 -1.7
6,841,692 + Pf6N2E2_6022 0.62 -1.1
6,841,787 + -1.2
6,841,788 - -1.2
6,841,865 + +0.9
6,841,866 - +0.4
6,841,866 - +0.3
6,841,866 - +0.6
6,841,866 - +1.9
6,841,928 - Pf6N2E2_6023 0.18 +0.2
6,842,161 - Pf6N2E2_6023 0.54 +0.7
6,842,161 - Pf6N2E2_6023 0.54 -0.5
6,842,194 - Pf6N2E2_6023 0.60 +0.5
6,842,199 + Pf6N2E2_6023 0.60 +0.6
6,842,199 + Pf6N2E2_6023 0.60 +1.9
6,842,200 - Pf6N2E2_6023 0.61 -0.1
6,842,218 + Pf6N2E2_6023 0.63 -1.3
6,842,219 - Pf6N2E2_6023 0.64 +3.7
6,842,332 + Pf6N2E2_6023 0.81 +0.5
6,842,333 - Pf6N2E2_6023 0.81 +0.3
6,842,362 + Pf6N2E2_6023 0.86 -0.9
6,842,393 - +1.7
6,842,523 - +1.2
6,842,556 + +0.3
6,842,559 - -2.5
6,842,686 + +0.5
6,842,686 + +0.1
6,842,687 - +0.1
6,842,705 + -0.3
6,842,705 + +0.8
6,842,707 + -1.2
6,842,707 + +1.8
6,842,707 + +0.1
6,842,708 - -0.4
6,842,708 - -0.3
6,842,724 + +1.3

Or see this region's nucleotide sequence