Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5911 and Pf6N2E2_5912 are separated by 8 nucleotides Pf6N2E2_5912 and Pf6N2E2_5913 overlap by 1 nucleotides Pf6N2E2_5913 and Pf6N2E2_5914 overlap by 7 nucleotides Pf6N2E2_5914 and Pf6N2E2_5915 are separated by 3 nucleotides
Pf6N2E2_5911 - Von Willebrand factor type A domain protein, associated with Flp pilus assembly, at 6,729,749 to 6,731,110
_5911
Pf6N2E2_5912 - Similar to TadZ/CpaE, associated with Flp pilus assembly, at 6,731,119 to 6,731,598
_5912
Pf6N2E2_5913 - Similar to TadZ/CpaE, associated with Flp pilus assembly, at 6,731,598 to 6,732,092
_5913
Pf6N2E2_5914 - Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly, at 6,732,086 to 6,733,306
_5914
Pf6N2E2_5915 - Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily, at 6,733,310 to 6,734,752
_5915
Position (kb)
6732
6733
6734 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6731.108 kb on + strand at 6731.109 kb on - strand at 6731.109 kb on - strand at 6731.242 kb on + strand, within Pf6N2E2_5912 at 6731.248 kb on + strand, within Pf6N2E2_5912 at 6731.248 kb on + strand, within Pf6N2E2_5912 at 6731.248 kb on + strand, within Pf6N2E2_5912 at 6731.248 kb on + strand, within Pf6N2E2_5912 at 6731.249 kb on - strand, within Pf6N2E2_5912 at 6731.249 kb on - strand, within Pf6N2E2_5912 at 6731.249 kb on - strand, within Pf6N2E2_5912 at 6731.249 kb on - strand, within Pf6N2E2_5912 at 6731.258 kb on + strand, within Pf6N2E2_5912 at 6731.258 kb on + strand, within Pf6N2E2_5912 at 6731.259 kb on - strand, within Pf6N2E2_5912 at 6731.310 kb on + strand, within Pf6N2E2_5912 at 6731.310 kb on + strand, within Pf6N2E2_5912 at 6731.311 kb on - strand, within Pf6N2E2_5912 at 6731.311 kb on - strand, within Pf6N2E2_5912 at 6731.374 kb on + strand, within Pf6N2E2_5912 at 6731.374 kb on + strand, within Pf6N2E2_5912 at 6731.375 kb on - strand, within Pf6N2E2_5912 at 6731.375 kb on - strand, within Pf6N2E2_5912 at 6731.479 kb on + strand, within Pf6N2E2_5912 at 6731.479 kb on + strand, within Pf6N2E2_5912 at 6731.480 kb on - strand, within Pf6N2E2_5912 at 6731.480 kb on - strand, within Pf6N2E2_5912 at 6731.480 kb on - strand, within Pf6N2E2_5912 at 6731.508 kb on + strand, within Pf6N2E2_5912 at 6731.625 kb on + strand at 6731.625 kb on + strand at 6731.626 kb on - strand at 6731.626 kb on - strand at 6731.626 kb on - strand at 6731.700 kb on + strand, within Pf6N2E2_5913 at 6731.700 kb on + strand, within Pf6N2E2_5913 at 6731.700 kb on + strand, within Pf6N2E2_5913 at 6731.701 kb on - strand, within Pf6N2E2_5913 at 6731.701 kb on - strand, within Pf6N2E2_5913 at 6731.701 kb on - strand, within Pf6N2E2_5913 at 6731.765 kb on + strand, within Pf6N2E2_5913 at 6731.766 kb on - strand, within Pf6N2E2_5913 at 6731.871 kb on + strand, within Pf6N2E2_5913 at 6731.872 kb on - strand, within Pf6N2E2_5913 at 6731.872 kb on - strand, within Pf6N2E2_5913 at 6731.947 kb on - strand, within Pf6N2E2_5913 at 6732.011 kb on + strand, within Pf6N2E2_5913 at 6732.012 kb on - strand, within Pf6N2E2_5913 at 6732.095 kb on - strand at 6732.202 kb on + strand at 6732.202 kb on + strand at 6732.203 kb on - strand at 6732.203 kb on - strand at 6732.261 kb on - strand, within Pf6N2E2_5914 at 6732.616 kb on + strand, within Pf6N2E2_5914 at 6732.616 kb on + strand, within Pf6N2E2_5914 at 6732.617 kb on - strand, within Pf6N2E2_5914 at 6732.662 kb on + strand, within Pf6N2E2_5914 at 6732.663 kb on - strand, within Pf6N2E2_5914 at 6732.663 kb on - strand, within Pf6N2E2_5914 at 6732.673 kb on - strand, within Pf6N2E2_5914 at 6732.857 kb on - strand, within Pf6N2E2_5914 at 6732.857 kb on - strand, within Pf6N2E2_5914 at 6732.863 kb on + strand, within Pf6N2E2_5914 at 6732.863 kb on + strand, within Pf6N2E2_5914 at 6732.863 kb on + strand, within Pf6N2E2_5914 at 6732.863 kb on + strand, within Pf6N2E2_5914 at 6732.864 kb on - strand, within Pf6N2E2_5914 at 6732.864 kb on - strand, within Pf6N2E2_5914 at 6732.941 kb on + strand, within Pf6N2E2_5914 at 6732.941 kb on + strand, within Pf6N2E2_5914 at 6732.942 kb on - strand, within Pf6N2E2_5914 at 6732.942 kb on - strand, within Pf6N2E2_5914 at 6733.274 kb on - strand at 6733.448 kb on + strand at 6733.448 kb on + strand at 6733.448 kb on + strand at 6733.503 kb on - strand, within Pf6N2E2_5915 at 6733.708 kb on + strand, within Pf6N2E2_5915 at 6733.709 kb on - strand, within Pf6N2E2_5915 at 6733.709 kb on - strand, within Pf6N2E2_5915 at 6733.709 kb on - strand, within Pf6N2E2_5915 at 6733.748 kb on + strand, within Pf6N2E2_5915 at 6734.196 kb on + strand, within Pf6N2E2_5915 at 6734.197 kb on - strand, within Pf6N2E2_5915 at 6734.197 kb on - strand, within Pf6N2E2_5915 at 6734.197 kb on - strand, within Pf6N2E2_5915 at 6734.267 kb on - strand, within Pf6N2E2_5915
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 6,731,108 + +0.3 6,731,109 - +1.2 6,731,109 - -0.8 6,731,242 + Pf6N2E2_5912 0.26 -1.6 6,731,248 + Pf6N2E2_5912 0.27 -0.4 6,731,248 + Pf6N2E2_5912 0.27 +0.3 6,731,248 + Pf6N2E2_5912 0.27 -1.5 6,731,248 + Pf6N2E2_5912 0.27 -0.2 6,731,249 - Pf6N2E2_5912 0.27 +0.4 6,731,249 - Pf6N2E2_5912 0.27 +0.4 6,731,249 - Pf6N2E2_5912 0.27 +1.7 6,731,249 - Pf6N2E2_5912 0.27 -1.6 6,731,258 + Pf6N2E2_5912 0.29 +0.8 6,731,258 + Pf6N2E2_5912 0.29 +0.8 6,731,259 - Pf6N2E2_5912 0.29 +2.0 6,731,310 + Pf6N2E2_5912 0.40 +1.2 6,731,310 + Pf6N2E2_5912 0.40 -1.0 6,731,311 - Pf6N2E2_5912 0.40 -1.0 6,731,311 - Pf6N2E2_5912 0.40 +1.0 6,731,374 + Pf6N2E2_5912 0.53 +0.9 6,731,374 + Pf6N2E2_5912 0.53 -0.3 6,731,375 - Pf6N2E2_5912 0.53 +0.5 6,731,375 - Pf6N2E2_5912 0.53 +0.3 6,731,479 + Pf6N2E2_5912 0.75 -0.1 6,731,479 + Pf6N2E2_5912 0.75 -0.1 6,731,480 - Pf6N2E2_5912 0.75 +1.6 6,731,480 - Pf6N2E2_5912 0.75 +1.5 6,731,480 - Pf6N2E2_5912 0.75 -0.3 6,731,508 + Pf6N2E2_5912 0.81 -1.3 6,731,625 + +1.2 6,731,625 + -0.3 6,731,626 - -0.6 6,731,626 - -0.1 6,731,626 - +1.3 6,731,700 + Pf6N2E2_5913 0.21 -1.1 6,731,700 + Pf6N2E2_5913 0.21 -2.2 6,731,700 + Pf6N2E2_5913 0.21 -0.2 6,731,701 - Pf6N2E2_5913 0.21 -0.4 6,731,701 - Pf6N2E2_5913 0.21 +0.2 6,731,701 - Pf6N2E2_5913 0.21 -0.5 6,731,765 + Pf6N2E2_5913 0.34 +0.4 6,731,766 - Pf6N2E2_5913 0.34 -0.8 6,731,871 + Pf6N2E2_5913 0.55 -1.1 6,731,872 - Pf6N2E2_5913 0.55 -0.3 6,731,872 - Pf6N2E2_5913 0.55 -0.8 6,731,947 - Pf6N2E2_5913 0.71 -0.4 6,732,011 + Pf6N2E2_5913 0.83 -0.4 6,732,012 - Pf6N2E2_5913 0.84 +0.1 6,732,095 - -0.1 6,732,202 + +0.0 6,732,202 + +0.6 6,732,203 - -0.7 6,732,203 - -1.4 6,732,261 - Pf6N2E2_5914 0.14 +0.6 6,732,616 + Pf6N2E2_5914 0.43 +0.3 6,732,616 + Pf6N2E2_5914 0.43 +0.2 6,732,617 - Pf6N2E2_5914 0.43 -2.4 6,732,662 + Pf6N2E2_5914 0.47 -1.2 6,732,663 - Pf6N2E2_5914 0.47 +0.7 6,732,663 - Pf6N2E2_5914 0.47 +2.1 6,732,673 - Pf6N2E2_5914 0.48 +0.2 6,732,857 - Pf6N2E2_5914 0.63 -1.6 6,732,857 - Pf6N2E2_5914 0.63 +0.0 6,732,863 + Pf6N2E2_5914 0.64 -2.6 6,732,863 + Pf6N2E2_5914 0.64 +2.5 6,732,863 + Pf6N2E2_5914 0.64 -0.5 6,732,863 + Pf6N2E2_5914 0.64 -0.3 6,732,864 - Pf6N2E2_5914 0.64 +1.1 6,732,864 - Pf6N2E2_5914 0.64 +0.9 6,732,941 + Pf6N2E2_5914 0.70 -0.7 6,732,941 + Pf6N2E2_5914 0.70 +0.4 6,732,942 - Pf6N2E2_5914 0.70 -0.6 6,732,942 - Pf6N2E2_5914 0.70 -3.1 6,733,274 - +0.7 6,733,448 + -0.9 6,733,448 + +0.5 6,733,448 + -1.4 6,733,503 - Pf6N2E2_5915 0.13 -1.5 6,733,708 + Pf6N2E2_5915 0.28 +1.2 6,733,709 - Pf6N2E2_5915 0.28 +0.5 6,733,709 - Pf6N2E2_5915 0.28 -0.2 6,733,709 - Pf6N2E2_5915 0.28 +0.7 6,733,748 + Pf6N2E2_5915 0.30 +0.7 6,734,196 + Pf6N2E2_5915 0.61 -0.5 6,734,197 - Pf6N2E2_5915 0.61 +0.5 6,734,197 - Pf6N2E2_5915 0.61 -0.6 6,734,197 - Pf6N2E2_5915 0.61 +0.5 6,734,267 - Pf6N2E2_5915 0.66 +0.1
Or see this region's nucleotide sequence