Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5891

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5890 and Pf6N2E2_5891 are separated by 215 nucleotidesPf6N2E2_5891 and Pf6N2E2_5892 are separated by 110 nucleotides Pf6N2E2_5890 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,709,112 to 6,710,146 _5890 Pf6N2E2_5891 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,710,362 to 6,710,502 _5891 Pf6N2E2_5892 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 6,710,613 to 6,712,580 _5892 Position (kb) 6710 6711Strain fitness (log2 ratio) -2 -1 0 1 2at 6709.488 kb on - strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.535 kb on + strand, within Pf6N2E2_5890at 6709.536 kb on - strand, within Pf6N2E2_5890at 6709.536 kb on - strand, within Pf6N2E2_5890at 6709.536 kb on - strand, within Pf6N2E2_5890at 6709.536 kb on - strand, within Pf6N2E2_5890at 6709.540 kb on + strand, within Pf6N2E2_5890at 6709.540 kb on + strand, within Pf6N2E2_5890at 6709.541 kb on - strand, within Pf6N2E2_5890at 6709.541 kb on - strand, within Pf6N2E2_5890at 6709.541 kb on - strand, within Pf6N2E2_5890at 6709.839 kb on + strand, within Pf6N2E2_5890at 6709.933 kb on - strand, within Pf6N2E2_5890at 6709.955 kb on + strand, within Pf6N2E2_5890at 6709.956 kb on - strand, within Pf6N2E2_5890at 6710.015 kb on + strand, within Pf6N2E2_5890at 6710.016 kb on - strand, within Pf6N2E2_5890at 6710.116 kb on + strandat 6710.116 kb on + strandat 6710.117 kb on - strandat 6710.245 kb on + strandat 6710.246 kb on - strandat 6710.326 kb on + strandat 6710.326 kb on + strandat 6710.326 kb on + strandat 6710.327 kb on - strandat 6710.492 kb on + strandat 6710.492 kb on + strandat 6710.492 kb on + strandat 6710.492 kb on + strandat 6710.493 kb on - strandat 6710.493 kb on - strandat 6710.493 kb on - strandat 6710.652 kb on - strandat 6710.820 kb on + strand, within Pf6N2E2_5892at 6711.096 kb on + strand, within Pf6N2E2_5892at 6711.096 kb on + strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.097 kb on - strand, within Pf6N2E2_5892at 6711.099 kb on - strand, within Pf6N2E2_5892at 6711.167 kb on - strand, within Pf6N2E2_5892at 6711.325 kb on - strand, within Pf6N2E2_5892at 6711.356 kb on + strand, within Pf6N2E2_5892at 6711.387 kb on + strand, within Pf6N2E2_5892at 6711.388 kb on - strand, within Pf6N2E2_5892at 6711.420 kb on + strand, within Pf6N2E2_5892

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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6,709,488 - Pf6N2E2_5890 0.36 -0.8
6,709,535 + Pf6N2E2_5890 0.41 -1.1
6,709,535 + Pf6N2E2_5890 0.41 +0.7
6,709,535 + Pf6N2E2_5890 0.41 +0.0
6,709,535 + Pf6N2E2_5890 0.41 -0.2
6,709,535 + Pf6N2E2_5890 0.41 -0.1
6,709,535 + Pf6N2E2_5890 0.41 +0.0
6,709,535 + Pf6N2E2_5890 0.41 +0.4
6,709,535 + Pf6N2E2_5890 0.41 +1.4
6,709,535 + Pf6N2E2_5890 0.41 +0.9
6,709,535 + Pf6N2E2_5890 0.41 +0.2
6,709,536 - Pf6N2E2_5890 0.41 +1.2
6,709,536 - Pf6N2E2_5890 0.41 -1.0
6,709,536 - Pf6N2E2_5890 0.41 +0.4
6,709,536 - Pf6N2E2_5890 0.41 -1.1
6,709,540 + Pf6N2E2_5890 0.41 -0.1
6,709,540 + Pf6N2E2_5890 0.41 +0.9
6,709,541 - Pf6N2E2_5890 0.41 +0.8
6,709,541 - Pf6N2E2_5890 0.41 -0.5
6,709,541 - Pf6N2E2_5890 0.41 -1.7
6,709,839 + Pf6N2E2_5890 0.70 -0.6
6,709,933 - Pf6N2E2_5890 0.79 +1.3
6,709,955 + Pf6N2E2_5890 0.81 -0.1
6,709,956 - Pf6N2E2_5890 0.82 +0.4
6,710,015 + Pf6N2E2_5890 0.87 +1.2
6,710,016 - Pf6N2E2_5890 0.87 -0.2
6,710,116 + -2.5
6,710,116 + +0.9
6,710,117 - +0.3
6,710,245 + +0.3
6,710,246 - -0.9
6,710,326 + -0.1
6,710,326 + -1.7
6,710,326 + -0.9
6,710,327 - -1.3
6,710,492 + -0.9
6,710,492 + +0.4
6,710,492 + +0.3
6,710,492 + -0.0
6,710,493 - -1.9
6,710,493 - -1.1
6,710,493 - -0.6
6,710,652 - -0.2
6,710,820 + Pf6N2E2_5892 0.11 -0.8
6,711,096 + Pf6N2E2_5892 0.25 -1.0
6,711,096 + Pf6N2E2_5892 0.25 -0.6
6,711,097 - Pf6N2E2_5892 0.25 +1.1
6,711,097 - Pf6N2E2_5892 0.25 -1.0
6,711,097 - Pf6N2E2_5892 0.25 -0.6
6,711,097 - Pf6N2E2_5892 0.25 -2.3
6,711,097 - Pf6N2E2_5892 0.25 -2.0
6,711,097 - Pf6N2E2_5892 0.25 +1.2
6,711,097 - Pf6N2E2_5892 0.25 -1.3
6,711,097 - Pf6N2E2_5892 0.25 -0.5
6,711,097 - Pf6N2E2_5892 0.25 -0.8
6,711,097 - Pf6N2E2_5892 0.25 +2.0
6,711,097 - Pf6N2E2_5892 0.25 -0.8
6,711,099 - Pf6N2E2_5892 0.25 +2.3
6,711,167 - Pf6N2E2_5892 0.28 +0.4
6,711,325 - Pf6N2E2_5892 0.36 +0.6
6,711,356 + Pf6N2E2_5892 0.38 +0.5
6,711,387 + Pf6N2E2_5892 0.39 -1.2
6,711,388 - Pf6N2E2_5892 0.39 +1.2
6,711,420 + Pf6N2E2_5892 0.41 +1.2

Or see this region's nucleotide sequence