Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5890 and Pf6N2E2_5891 are separated by 215 nucleotides Pf6N2E2_5891 and Pf6N2E2_5892 are separated by 110 nucleotides
Pf6N2E2_5890 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,709,112 to 6,710,146
_5890
Pf6N2E2_5891 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,710,362 to 6,710,502
_5891
Pf6N2E2_5892 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 6,710,613 to 6,712,580
_5892
Position (kb)
6710
6711 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6709.488 kb on - strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.535 kb on + strand, within Pf6N2E2_5890 at 6709.536 kb on - strand, within Pf6N2E2_5890 at 6709.536 kb on - strand, within Pf6N2E2_5890 at 6709.536 kb on - strand, within Pf6N2E2_5890 at 6709.536 kb on - strand, within Pf6N2E2_5890 at 6709.540 kb on + strand, within Pf6N2E2_5890 at 6709.540 kb on + strand, within Pf6N2E2_5890 at 6709.541 kb on - strand, within Pf6N2E2_5890 at 6709.541 kb on - strand, within Pf6N2E2_5890 at 6709.541 kb on - strand, within Pf6N2E2_5890 at 6709.839 kb on + strand, within Pf6N2E2_5890 at 6709.933 kb on - strand, within Pf6N2E2_5890 at 6709.955 kb on + strand, within Pf6N2E2_5890 at 6709.956 kb on - strand, within Pf6N2E2_5890 at 6710.015 kb on + strand, within Pf6N2E2_5890 at 6710.016 kb on - strand, within Pf6N2E2_5890 at 6710.116 kb on + strand at 6710.116 kb on + strand at 6710.117 kb on - strand at 6710.245 kb on + strand at 6710.246 kb on - strand at 6710.326 kb on + strand at 6710.326 kb on + strand at 6710.326 kb on + strand at 6710.327 kb on - strand at 6710.492 kb on + strand at 6710.492 kb on + strand at 6710.492 kb on + strand at 6710.492 kb on + strand at 6710.493 kb on - strand at 6710.493 kb on - strand at 6710.493 kb on - strand at 6710.652 kb on - strand at 6710.820 kb on + strand, within Pf6N2E2_5892 at 6711.096 kb on + strand, within Pf6N2E2_5892 at 6711.096 kb on + strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.097 kb on - strand, within Pf6N2E2_5892 at 6711.099 kb on - strand, within Pf6N2E2_5892 at 6711.167 kb on - strand, within Pf6N2E2_5892 at 6711.325 kb on - strand, within Pf6N2E2_5892 at 6711.356 kb on + strand, within Pf6N2E2_5892 at 6711.387 kb on + strand, within Pf6N2E2_5892 at 6711.388 kb on - strand, within Pf6N2E2_5892 at 6711.420 kb on + strand, within Pf6N2E2_5892
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 6,709,488 - Pf6N2E2_5890 0.36 -0.8 6,709,535 + Pf6N2E2_5890 0.41 -1.1 6,709,535 + Pf6N2E2_5890 0.41 +0.7 6,709,535 + Pf6N2E2_5890 0.41 +0.0 6,709,535 + Pf6N2E2_5890 0.41 -0.2 6,709,535 + Pf6N2E2_5890 0.41 -0.1 6,709,535 + Pf6N2E2_5890 0.41 +0.0 6,709,535 + Pf6N2E2_5890 0.41 +0.4 6,709,535 + Pf6N2E2_5890 0.41 +1.4 6,709,535 + Pf6N2E2_5890 0.41 +0.9 6,709,535 + Pf6N2E2_5890 0.41 +0.2 6,709,536 - Pf6N2E2_5890 0.41 +1.2 6,709,536 - Pf6N2E2_5890 0.41 -1.0 6,709,536 - Pf6N2E2_5890 0.41 +0.4 6,709,536 - Pf6N2E2_5890 0.41 -1.1 6,709,540 + Pf6N2E2_5890 0.41 -0.1 6,709,540 + Pf6N2E2_5890 0.41 +0.9 6,709,541 - Pf6N2E2_5890 0.41 +0.8 6,709,541 - Pf6N2E2_5890 0.41 -0.5 6,709,541 - Pf6N2E2_5890 0.41 -1.7 6,709,839 + Pf6N2E2_5890 0.70 -0.6 6,709,933 - Pf6N2E2_5890 0.79 +1.3 6,709,955 + Pf6N2E2_5890 0.81 -0.1 6,709,956 - Pf6N2E2_5890 0.82 +0.4 6,710,015 + Pf6N2E2_5890 0.87 +1.2 6,710,016 - Pf6N2E2_5890 0.87 -0.2 6,710,116 + -2.5 6,710,116 + +0.9 6,710,117 - +0.3 6,710,245 + +0.3 6,710,246 - -0.9 6,710,326 + -0.1 6,710,326 + -1.7 6,710,326 + -0.9 6,710,327 - -1.3 6,710,492 + -0.9 6,710,492 + +0.4 6,710,492 + +0.3 6,710,492 + -0.0 6,710,493 - -1.9 6,710,493 - -1.1 6,710,493 - -0.6 6,710,652 - -0.2 6,710,820 + Pf6N2E2_5892 0.11 -0.8 6,711,096 + Pf6N2E2_5892 0.25 -1.0 6,711,096 + Pf6N2E2_5892 0.25 -0.6 6,711,097 - Pf6N2E2_5892 0.25 +1.1 6,711,097 - Pf6N2E2_5892 0.25 -1.0 6,711,097 - Pf6N2E2_5892 0.25 -0.6 6,711,097 - Pf6N2E2_5892 0.25 -2.3 6,711,097 - Pf6N2E2_5892 0.25 -2.0 6,711,097 - Pf6N2E2_5892 0.25 +1.2 6,711,097 - Pf6N2E2_5892 0.25 -1.3 6,711,097 - Pf6N2E2_5892 0.25 -0.5 6,711,097 - Pf6N2E2_5892 0.25 -0.8 6,711,097 - Pf6N2E2_5892 0.25 +2.0 6,711,097 - Pf6N2E2_5892 0.25 -0.8 6,711,099 - Pf6N2E2_5892 0.25 +2.3 6,711,167 - Pf6N2E2_5892 0.28 +0.4 6,711,325 - Pf6N2E2_5892 0.36 +0.6 6,711,356 + Pf6N2E2_5892 0.38 +0.5 6,711,387 + Pf6N2E2_5892 0.39 -1.2 6,711,388 - Pf6N2E2_5892 0.39 +1.2 6,711,420 + Pf6N2E2_5892 0.41 +1.2
Or see this region's nucleotide sequence