Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5056

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5055 and Pf6N2E2_5056 are separated by 167 nucleotidesPf6N2E2_5056 and Pf6N2E2_5057 are separated by 61 nucleotidesPf6N2E2_5057 and Pf6N2E2_5058 are separated by 36 nucleotides Pf6N2E2_5055 - membrane protein, putative, at 5,829,769 to 5,830,647 _5055 Pf6N2E2_5056 - Hexuronate transporter, at 5,830,815 to 5,832,152 _5056 Pf6N2E2_5057 - hypothetical protein, at 5,832,214 to 5,832,387 _5057 Pf6N2E2_5058 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 5,832,424 to 5,834,325 _5058 Position (kb) 5830 5831 5832 5833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5829.826 kb on - strandat 5829.866 kb on + strand, within Pf6N2E2_5055at 5829.866 kb on + strand, within Pf6N2E2_5055at 5829.874 kb on + strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.920 kb on - strand, within Pf6N2E2_5055at 5829.920 kb on - strand, within Pf6N2E2_5055at 5829.980 kb on + strand, within Pf6N2E2_5055at 5829.981 kb on - strand, within Pf6N2E2_5055at 5829.981 kb on - strand, within Pf6N2E2_5055at 5829.984 kb on + strand, within Pf6N2E2_5055at 5829.985 kb on - strand, within Pf6N2E2_5055at 5829.985 kb on - strand, within Pf6N2E2_5055at 5829.985 kb on - strand, within Pf6N2E2_5055at 5830.189 kb on - strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.282 kb on - strand, within Pf6N2E2_5055at 5830.855 kb on + strandat 5830.855 kb on + strandat 5830.855 kb on + strandat 5830.855 kb on + strandat 5830.856 kb on - strandat 5830.856 kb on - strandat 5830.856 kb on - strandat 5830.856 kb on - strandat 5830.879 kb on + strandat 5830.879 kb on + strandat 5830.879 kb on + strandat 5830.880 kb on - strandat 5830.880 kb on - strandat 5830.912 kb on + strandat 5830.912 kb on + strandat 5830.912 kb on + strandat 5830.913 kb on - strandat 5830.913 kb on - strandat 5830.913 kb on - strandat 5830.913 kb on - strandat 5830.913 kb on - strandat 5830.913 kb on - strandat 5830.916 kb on + strandat 5830.916 kb on + strandat 5830.916 kb on + strandat 5830.916 kb on + strandat 5830.916 kb on + strandat 5830.917 kb on - strandat 5831.029 kb on + strand, within Pf6N2E2_5056at 5831.029 kb on + strand, within Pf6N2E2_5056at 5831.030 kb on - strand, within Pf6N2E2_5056at 5831.030 kb on - strand, within Pf6N2E2_5056at 5831.030 kb on - strand, within Pf6N2E2_5056at 5831.266 kb on + strand, within Pf6N2E2_5056at 5831.317 kb on + strand, within Pf6N2E2_5056at 5831.317 kb on + strand, within Pf6N2E2_5056at 5831.317 kb on + strand, within Pf6N2E2_5056at 5831.318 kb on - strand, within Pf6N2E2_5056at 5831.318 kb on - strand, within Pf6N2E2_5056at 5831.318 kb on - strand, within Pf6N2E2_5056at 5831.347 kb on + strand, within Pf6N2E2_5056at 5831.348 kb on - strand, within Pf6N2E2_5056at 5831.348 kb on - strand, within Pf6N2E2_5056at 5831.348 kb on - strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.353 kb on + strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.354 kb on - strand, within Pf6N2E2_5056at 5831.473 kb on + strand, within Pf6N2E2_5056at 5831.473 kb on + strand, within Pf6N2E2_5056at 5831.473 kb on + strand, within Pf6N2E2_5056at 5831.474 kb on - strand, within Pf6N2E2_5056at 5831.474 kb on - strand, within Pf6N2E2_5056at 5831.521 kb on + strand, within Pf6N2E2_5056at 5831.522 kb on - strand, within Pf6N2E2_5056at 5831.663 kb on + strand, within Pf6N2E2_5056at 5831.664 kb on - strand, within Pf6N2E2_5056at 5831.868 kb on + strand, within Pf6N2E2_5056at 5831.869 kb on - strand, within Pf6N2E2_5056at 5831.936 kb on - strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.007 kb on + strand, within Pf6N2E2_5056at 5832.008 kb on - strand, within Pf6N2E2_5056at 5832.008 kb on - strand, within Pf6N2E2_5056at 5832.008 kb on - strand, within Pf6N2E2_5056at 5832.152 kb on + strandat 5832.152 kb on + strandat 5832.152 kb on + strandat 5832.152 kb on + strandat 5832.153 kb on - strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.178 kb on + strandat 5832.179 kb on - strandat 5832.321 kb on + strand, within Pf6N2E2_5057at 5832.321 kb on + strand, within Pf6N2E2_5057at 5832.322 kb on - strand, within Pf6N2E2_5057at 5832.325 kb on + strand, within Pf6N2E2_5057at 5832.325 kb on + strand, within Pf6N2E2_5057at 5832.326 kb on - strand, within Pf6N2E2_5057at 5832.329 kb on - strand, within Pf6N2E2_5057at 5832.535 kb on + strandat 5832.535 kb on + strandat 5832.535 kb on + strandat 5832.535 kb on + strandat 5832.538 kb on + strandat 5832.538 kb on + strandat 5832.539 kb on - strandat 5832.814 kb on - strand, within Pf6N2E2_5058at 5832.814 kb on - strand, within Pf6N2E2_5058at 5832.852 kb on + strand, within Pf6N2E2_5058at 5832.852 kb on + strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.853 kb on - strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.856 kb on + strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058at 5832.857 kb on - strand, within Pf6N2E2_5058

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,829,826 - +2.2
5,829,866 + Pf6N2E2_5055 0.11 +1.5
5,829,866 + Pf6N2E2_5055 0.11 +0.0
5,829,874 + Pf6N2E2_5055 0.12 -0.8
5,829,875 - Pf6N2E2_5055 0.12 -1.8
5,829,875 - Pf6N2E2_5055 0.12 +1.0
5,829,875 - Pf6N2E2_5055 0.12 -1.2
5,829,875 - Pf6N2E2_5055 0.12 -0.8
5,829,875 - Pf6N2E2_5055 0.12 +0.8
5,829,875 - Pf6N2E2_5055 0.12 +0.1
5,829,919 + Pf6N2E2_5055 0.17 -1.1
5,829,919 + Pf6N2E2_5055 0.17 -0.7
5,829,919 + Pf6N2E2_5055 0.17 +0.9
5,829,919 + Pf6N2E2_5055 0.17 -0.0
5,829,919 + Pf6N2E2_5055 0.17 +0.2
5,829,919 + Pf6N2E2_5055 0.17 -0.4
5,829,920 - Pf6N2E2_5055 0.17 +1.3
5,829,920 - Pf6N2E2_5055 0.17 -1.0
5,829,980 + Pf6N2E2_5055 0.24 -1.8
5,829,981 - Pf6N2E2_5055 0.24 -0.2
5,829,981 - Pf6N2E2_5055 0.24 +1.8
5,829,984 + Pf6N2E2_5055 0.24 -0.3
5,829,985 - Pf6N2E2_5055 0.25 -1.7
5,829,985 - Pf6N2E2_5055 0.25 +1.1
5,829,985 - Pf6N2E2_5055 0.25 +1.8
5,830,189 - Pf6N2E2_5055 0.48 -2.0
5,830,279 + Pf6N2E2_5055 0.58 +1.0
5,830,279 + Pf6N2E2_5055 0.58 -1.8
5,830,279 + Pf6N2E2_5055 0.58 -1.5
5,830,279 + Pf6N2E2_5055 0.58 +0.2
5,830,280 - Pf6N2E2_5055 0.58 +0.5
5,830,280 - Pf6N2E2_5055 0.58 -0.0
5,830,280 - Pf6N2E2_5055 0.58 -0.2
5,830,280 - Pf6N2E2_5055 0.58 +0.0
5,830,280 - Pf6N2E2_5055 0.58 -2.4
5,830,282 - Pf6N2E2_5055 0.58 -0.5
5,830,855 + +0.8
5,830,855 + -1.3
5,830,855 + -1.4
5,830,855 + +0.2
5,830,856 - -0.2
5,830,856 - -0.0
5,830,856 - -1.2
5,830,856 - -0.0
5,830,879 + +1.1
5,830,879 + +1.0
5,830,879 + +0.4
5,830,880 - -2.8
5,830,880 - -0.1
5,830,912 + -0.1
5,830,912 + +1.0
5,830,912 + -0.1
5,830,913 - -0.4
5,830,913 - -1.3
5,830,913 - +0.4
5,830,913 - -0.5
5,830,913 - -0.5
5,830,913 - -2.9
5,830,916 + +0.9
5,830,916 + -2.6
5,830,916 + +0.8
5,830,916 + -0.2
5,830,916 + -0.1
5,830,917 - -0.8
5,831,029 + Pf6N2E2_5056 0.16 +1.6
5,831,029 + Pf6N2E2_5056 0.16 -0.3
5,831,030 - Pf6N2E2_5056 0.16 +0.2
5,831,030 - Pf6N2E2_5056 0.16 +1.3
5,831,030 - Pf6N2E2_5056 0.16 -3.0
5,831,266 + Pf6N2E2_5056 0.34 +0.2
5,831,317 + Pf6N2E2_5056 0.38 -0.2
5,831,317 + Pf6N2E2_5056 0.38 -0.2
5,831,317 + Pf6N2E2_5056 0.38 +0.8
5,831,318 - Pf6N2E2_5056 0.38 -0.3
5,831,318 - Pf6N2E2_5056 0.38 -0.5
5,831,318 - Pf6N2E2_5056 0.38 -0.4
5,831,347 + Pf6N2E2_5056 0.40 -0.6
5,831,348 - Pf6N2E2_5056 0.40 -0.9
5,831,348 - Pf6N2E2_5056 0.40 -0.1
5,831,348 - Pf6N2E2_5056 0.40 +0.4
5,831,353 + Pf6N2E2_5056 0.40 +0.2
5,831,353 + Pf6N2E2_5056 0.40 +0.4
5,831,353 + Pf6N2E2_5056 0.40 -0.3
5,831,353 + Pf6N2E2_5056 0.40 -0.7
5,831,354 - Pf6N2E2_5056 0.40 -0.6
5,831,354 - Pf6N2E2_5056 0.40 -0.8
5,831,354 - Pf6N2E2_5056 0.40 -2.0
5,831,354 - Pf6N2E2_5056 0.40 +0.2
5,831,354 - Pf6N2E2_5056 0.40 -0.4
5,831,354 - Pf6N2E2_5056 0.40 +2.0
5,831,473 + Pf6N2E2_5056 0.49 -1.1
5,831,473 + Pf6N2E2_5056 0.49 -1.9
5,831,473 + Pf6N2E2_5056 0.49 +0.0
5,831,474 - Pf6N2E2_5056 0.49 -1.7
5,831,474 - Pf6N2E2_5056 0.49 +1.5
5,831,521 + Pf6N2E2_5056 0.53 +0.2
5,831,522 - Pf6N2E2_5056 0.53 -0.1
5,831,663 + Pf6N2E2_5056 0.63 -0.4
5,831,664 - Pf6N2E2_5056 0.63 +0.2
5,831,868 + Pf6N2E2_5056 0.79 -1.1
5,831,869 - Pf6N2E2_5056 0.79 +0.0
5,831,936 - Pf6N2E2_5056 0.84 +0.0
5,832,007 + Pf6N2E2_5056 0.89 -0.2
5,832,007 + Pf6N2E2_5056 0.89 -0.5
5,832,007 + Pf6N2E2_5056 0.89 +0.2
5,832,007 + Pf6N2E2_5056 0.89 -1.5
5,832,008 - Pf6N2E2_5056 0.89 +0.2
5,832,008 - Pf6N2E2_5056 0.89 -0.1
5,832,008 - Pf6N2E2_5056 0.89 -0.5
5,832,152 + -2.5
5,832,152 + -2.7
5,832,152 + +1.2
5,832,152 + +0.8
5,832,153 - -0.2
5,832,178 + -0.6
5,832,178 + +0.2
5,832,178 + -0.2
5,832,178 + -1.3
5,832,178 + -0.1
5,832,179 - -0.8
5,832,321 + Pf6N2E2_5057 0.61 +1.7
5,832,321 + Pf6N2E2_5057 0.61 -0.6
5,832,322 - Pf6N2E2_5057 0.62 -1.1
5,832,325 + Pf6N2E2_5057 0.64 +0.5
5,832,325 + Pf6N2E2_5057 0.64 +0.1
5,832,326 - Pf6N2E2_5057 0.64 +1.0
5,832,329 - Pf6N2E2_5057 0.66 -1.1
5,832,535 + +2.4
5,832,535 + -0.2
5,832,535 + -2.0
5,832,535 + -0.5
5,832,538 + -1.4
5,832,538 + -1.5
5,832,539 - -0.1
5,832,814 - Pf6N2E2_5058 0.21 +1.0
5,832,814 - Pf6N2E2_5058 0.21 -2.0
5,832,852 + Pf6N2E2_5058 0.23 -0.2
5,832,852 + Pf6N2E2_5058 0.23 +0.1
5,832,853 - Pf6N2E2_5058 0.23 +0.4
5,832,853 - Pf6N2E2_5058 0.23 -0.5
5,832,853 - Pf6N2E2_5058 0.23 +0.5
5,832,853 - Pf6N2E2_5058 0.23 +0.4
5,832,856 + Pf6N2E2_5058 0.23 -0.5
5,832,856 + Pf6N2E2_5058 0.23 +2.3
5,832,856 + Pf6N2E2_5058 0.23 +0.7
5,832,856 + Pf6N2E2_5058 0.23 -1.0
5,832,857 - Pf6N2E2_5058 0.23 -1.4
5,832,857 - Pf6N2E2_5058 0.23 -1.6
5,832,857 - Pf6N2E2_5058 0.23 -1.3
5,832,857 - Pf6N2E2_5058 0.23 +0.1

Or see this region's nucleotide sequence