Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4964

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4963 and Pf6N2E2_4964 overlap by 4 nucleotidesPf6N2E2_4964 and Pf6N2E2_4965 are separated by 112 nucleotides Pf6N2E2_4963 - Homoserine dehydrogenase (EC 1.1.1.3), at 5,724,211 to 5,725,269 _4963 Pf6N2E2_4964 - Aldehyde dehydrogenase (EC 1.2.1.3), at 5,725,266 to 5,726,678 _4964 Pf6N2E2_4965 - hypothetical protein, at 5,726,791 to 5,727,738 _4965 Position (kb) 5725 5726 5727Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5724.589 kb on - strand, within Pf6N2E2_4963at 5724.662 kb on - strand, within Pf6N2E2_4963at 5725.408 kb on + strand, within Pf6N2E2_4964at 5725.409 kb on - strand, within Pf6N2E2_4964at 5725.409 kb on - strand, within Pf6N2E2_4964at 5725.705 kb on - strand, within Pf6N2E2_4964at 5725.705 kb on - strand, within Pf6N2E2_4964at 5726.133 kb on + strand, within Pf6N2E2_4964at 5726.133 kb on + strand, within Pf6N2E2_4964at 5726.133 kb on + strand, within Pf6N2E2_4964at 5726.134 kb on - strand, within Pf6N2E2_4964at 5726.134 kb on - strand, within Pf6N2E2_4964at 5726.290 kb on + strand, within Pf6N2E2_4964at 5726.290 kb on + strand, within Pf6N2E2_4964at 5726.290 kb on + strand, within Pf6N2E2_4964at 5726.290 kb on + strand, within Pf6N2E2_4964at 5726.290 kb on + strand, within Pf6N2E2_4964at 5726.291 kb on - strand, within Pf6N2E2_4964at 5726.291 kb on - strand, within Pf6N2E2_4964at 5726.291 kb on - strand, within Pf6N2E2_4964at 5726.291 kb on - strand, within Pf6N2E2_4964at 5726.291 kb on - strand, within Pf6N2E2_4964at 5726.322 kb on + strand, within Pf6N2E2_4964at 5726.322 kb on + strand, within Pf6N2E2_4964at 5726.478 kb on - strand, within Pf6N2E2_4964at 5726.592 kb on + strandat 5726.593 kb on - strandat 5726.628 kb on + strandat 5726.666 kb on + strandat 5726.666 kb on + strandat 5726.666 kb on + strandat 5726.666 kb on + strandat 5726.666 kb on + strandat 5726.667 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.773 kb on - strandat 5726.793 kb on - strandat 5726.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,724,589 - Pf6N2E2_4963 0.36 +0.6
5,724,662 - Pf6N2E2_4963 0.43 -0.8
5,725,408 + Pf6N2E2_4964 0.10 +0.6
5,725,409 - Pf6N2E2_4964 0.10 +1.2
5,725,409 - Pf6N2E2_4964 0.10 +1.4
5,725,705 - Pf6N2E2_4964 0.31 -1.8
5,725,705 - Pf6N2E2_4964 0.31 +0.2
5,726,133 + Pf6N2E2_4964 0.61 +0.5
5,726,133 + Pf6N2E2_4964 0.61 +0.0
5,726,133 + Pf6N2E2_4964 0.61 -0.9
5,726,134 - Pf6N2E2_4964 0.61 +2.1
5,726,134 - Pf6N2E2_4964 0.61 +0.2
5,726,290 + Pf6N2E2_4964 0.72 +1.6
5,726,290 + Pf6N2E2_4964 0.72 +0.5
5,726,290 + Pf6N2E2_4964 0.72 +0.4
5,726,290 + Pf6N2E2_4964 0.72 +1.7
5,726,290 + Pf6N2E2_4964 0.72 +0.9
5,726,291 - Pf6N2E2_4964 0.73 -0.1
5,726,291 - Pf6N2E2_4964 0.73 -1.1
5,726,291 - Pf6N2E2_4964 0.73 +0.7
5,726,291 - Pf6N2E2_4964 0.73 -0.4
5,726,291 - Pf6N2E2_4964 0.73 +0.9
5,726,322 + Pf6N2E2_4964 0.75 -0.3
5,726,322 + Pf6N2E2_4964 0.75 -0.1
5,726,478 - Pf6N2E2_4964 0.86 -0.9
5,726,592 + -1.8
5,726,593 - +0.1
5,726,628 + -0.7
5,726,666 + -1.3
5,726,666 + +0.3
5,726,666 + -0.4
5,726,666 + +0.8
5,726,666 + -0.1
5,726,667 - +2.9
5,726,773 - -0.1
5,726,773 - -2.8
5,726,773 - +0.4
5,726,773 - -0.2
5,726,773 - -0.1
5,726,773 - -1.1
5,726,773 - +0.2
5,726,773 - -0.8
5,726,773 - +0.6
5,726,773 - +0.5
5,726,793 - +0.5
5,726,793 - +1.3

Or see this region's nucleotide sequence