Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4959 and Pf6N2E2_4960 are separated by 59 nucleotides Pf6N2E2_4960 and Pf6N2E2_4961 are separated by 30 nucleotides Pf6N2E2_4961 and Pf6N2E2_4962 are separated by 11 nucleotides
Pf6N2E2_4959 - S-methylmethionine permease, at 5,718,847 to 5,720,277
_4959
Pf6N2E2_4960 - Transcriptional regulator, LysR family, at 5,720,337 to 5,721,221
_4960
Pf6N2E2_4961 - Threonine synthase (EC 4.2.3.1), at 5,721,252 to 5,722,616
_4961
Pf6N2E2_4962 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,722,628 to 5,723,065
_4962
Position (kb) 5721
5722
5723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5720.275 kb on + strand at 5720.276 kb on - strand at 5720.276 kb on - strand at 5720.276 kb on - strand at 5720.276 kb on - strand at 5720.544 kb on + strand, within Pf6N2E2_4960 at 5720.545 kb on - strand, within Pf6N2E2_4960 at 5720.719 kb on - strand, within Pf6N2E2_4960 at 5720.719 kb on - strand, within Pf6N2E2_4960 at 5720.916 kb on + strand, within Pf6N2E2_4960 at 5720.935 kb on - strand, within Pf6N2E2_4960 at 5721.132 kb on + strand, within Pf6N2E2_4960 at 5721.132 kb on + strand, within Pf6N2E2_4960 at 5721.132 kb on + strand, within Pf6N2E2_4960 at 5721.133 kb on - strand at 5721.402 kb on + strand, within Pf6N2E2_4961 at 5721.403 kb on - strand, within Pf6N2E2_4961 at 5721.741 kb on + strand, within Pf6N2E2_4961 at 5721.742 kb on - strand, within Pf6N2E2_4961 at 5721.933 kb on + strand, within Pf6N2E2_4961 at 5721.933 kb on + strand, within Pf6N2E2_4961 at 5721.934 kb on - strand, within Pf6N2E2_4961 at 5721.934 kb on - strand, within Pf6N2E2_4961 at 5721.934 kb on - strand, within Pf6N2E2_4961 at 5722.014 kb on + strand, within Pf6N2E2_4961 at 5722.014 kb on + strand, within Pf6N2E2_4961 at 5722.014 kb on + strand, within Pf6N2E2_4961 at 5722.015 kb on - strand, within Pf6N2E2_4961 at 5722.015 kb on - strand, within Pf6N2E2_4961 at 5722.117 kb on - strand, within Pf6N2E2_4961 at 5722.203 kb on + strand, within Pf6N2E2_4961 at 5722.203 kb on + strand, within Pf6N2E2_4961 at 5722.314 kb on + strand, within Pf6N2E2_4961 at 5722.315 kb on - strand, within Pf6N2E2_4961 at 5722.423 kb on - strand, within Pf6N2E2_4961 at 5722.787 kb on + strand, within Pf6N2E2_4962 at 5722.987 kb on + strand, within Pf6N2E2_4962 at 5722.987 kb on + strand, within Pf6N2E2_4962 at 5722.987 kb on + strand, within Pf6N2E2_4962 at 5722.988 kb on - strand, within Pf6N2E2_4962 at 5722.988 kb on - strand, within Pf6N2E2_4962 at 5722.988 kb on - strand, within Pf6N2E2_4962 at 5723.178 kb on + strand at 5723.178 kb on + strand at 5723.499 kb on + strand at 5723.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,720,275 + -0.0 5,720,276 - +1.1 5,720,276 - +0.6 5,720,276 - +0.5 5,720,276 - -0.5 5,720,544 + Pf6N2E2_4960 0.23 -0.8 5,720,545 - Pf6N2E2_4960 0.24 -1.3 5,720,719 - Pf6N2E2_4960 0.43 -0.8 5,720,719 - Pf6N2E2_4960 0.43 +0.3 5,720,916 + Pf6N2E2_4960 0.65 +1.2 5,720,935 - Pf6N2E2_4960 0.68 -0.3 5,721,132 + Pf6N2E2_4960 0.90 -2.6 5,721,132 + Pf6N2E2_4960 0.90 -2.7 5,721,132 + Pf6N2E2_4960 0.90 -1.8 5,721,133 - -1.2 5,721,402 + Pf6N2E2_4961 0.11 -2.4 5,721,403 - Pf6N2E2_4961 0.11 +1.4 5,721,741 + Pf6N2E2_4961 0.36 +0.2 5,721,742 - Pf6N2E2_4961 0.36 +1.2 5,721,933 + Pf6N2E2_4961 0.50 -0.9 5,721,933 + Pf6N2E2_4961 0.50 +0.0 5,721,934 - Pf6N2E2_4961 0.50 +0.2 5,721,934 - Pf6N2E2_4961 0.50 -0.9 5,721,934 - Pf6N2E2_4961 0.50 -0.4 5,722,014 + Pf6N2E2_4961 0.56 +0.3 5,722,014 + Pf6N2E2_4961 0.56 +1.7 5,722,014 + Pf6N2E2_4961 0.56 +0.2 5,722,015 - Pf6N2E2_4961 0.56 -0.7 5,722,015 - Pf6N2E2_4961 0.56 +2.4 5,722,117 - Pf6N2E2_4961 0.63 -1.1 5,722,203 + Pf6N2E2_4961 0.70 +1.2 5,722,203 + Pf6N2E2_4961 0.70 -0.2 5,722,314 + Pf6N2E2_4961 0.78 -1.8 5,722,315 - Pf6N2E2_4961 0.78 -1.3 5,722,423 - Pf6N2E2_4961 0.86 +1.7 5,722,787 + Pf6N2E2_4962 0.36 -0.9 5,722,987 + Pf6N2E2_4962 0.82 +0.1 5,722,987 + Pf6N2E2_4962 0.82 +0.9 5,722,987 + Pf6N2E2_4962 0.82 +0.9 5,722,988 - Pf6N2E2_4962 0.82 -0.7 5,722,988 - Pf6N2E2_4962 0.82 -0.4 5,722,988 - Pf6N2E2_4962 0.82 +0.3 5,723,178 + -1.2 5,723,178 + -0.1 5,723,499 + -0.4 5,723,499 + -0.9
Or see this region's nucleotide sequence