Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4924 and Pf6N2E2_4925 overlap by 4 nucleotides Pf6N2E2_4925 and Pf6N2E2_4926 are separated by 59 nucleotides Pf6N2E2_4926 and Pf6N2E2_4927 are separated by 110 nucleotides Pf6N2E2_4927 and Pf6N2E2_4928 overlap by 4 nucleotides
Pf6N2E2_4924 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 5,677,571 to 5,678,536
_4924
Pf6N2E2_4925 - Phosphatidylglycerophosphatase A (EC 3.1.3.27), at 5,678,533 to 5,679,036
_4925
Pf6N2E2_4926 - hypothetical protein, at 5,679,096 to 5,679,806
_4926
Pf6N2E2_4927 - GTP cyclohydrolase II (EC 3.5.4.25), at 5,679,917 to 5,680,534
_4927
Pf6N2E2_4928 - Permeases of the major facilitator superfamily, at 5,680,531 to 5,680,950
_4928
Position (kb)
5679
5680 Strain fitness (log2 ratio)
-1
0
1
2
3 at 5679.067 kb on + strand at 5679.068 kb on - strand at 5679.068 kb on - strand at 5679.068 kb on - strand at 5679.086 kb on - strand at 5679.203 kb on + strand, within Pf6N2E2_4926 at 5679.361 kb on - strand, within Pf6N2E2_4926 at 5679.361 kb on - strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.374 kb on + strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.375 kb on - strand, within Pf6N2E2_4926 at 5679.378 kb on + strand, within Pf6N2E2_4926 at 5679.378 kb on + strand, within Pf6N2E2_4926 at 5679.378 kb on + strand, within Pf6N2E2_4926 at 5679.378 kb on + strand, within Pf6N2E2_4926 at 5679.378 kb on + strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.379 kb on - strand, within Pf6N2E2_4926 at 5679.432 kb on + strand, within Pf6N2E2_4926 at 5679.433 kb on - strand, within Pf6N2E2_4926 at 5679.433 kb on - strand, within Pf6N2E2_4926 at 5679.462 kb on + strand, within Pf6N2E2_4926 at 5679.462 kb on + strand, within Pf6N2E2_4926 at 5679.471 kb on + strand, within Pf6N2E2_4926 at 5679.471 kb on + strand, within Pf6N2E2_4926 at 5679.471 kb on + strand, within Pf6N2E2_4926 at 5679.472 kb on - strand, within Pf6N2E2_4926 at 5679.472 kb on - strand, within Pf6N2E2_4926 at 5679.472 kb on - strand, within Pf6N2E2_4926 at 5679.472 kb on - strand, within Pf6N2E2_4926 at 5679.515 kb on - strand, within Pf6N2E2_4926 at 5679.518 kb on + strand, within Pf6N2E2_4926 at 5679.518 kb on + strand, within Pf6N2E2_4926 at 5679.518 kb on + strand, within Pf6N2E2_4926 at 5679.519 kb on - strand, within Pf6N2E2_4926 at 5679.519 kb on - strand, within Pf6N2E2_4926 at 5679.555 kb on + strand, within Pf6N2E2_4926 at 5679.556 kb on - strand, within Pf6N2E2_4926 at 5679.648 kb on + strand, within Pf6N2E2_4926 at 5679.680 kb on + strand, within Pf6N2E2_4926 at 5679.680 kb on + strand, within Pf6N2E2_4926 at 5679.680 kb on + strand, within Pf6N2E2_4926 at 5679.681 kb on - strand, within Pf6N2E2_4926 at 5679.768 kb on + strand at 5679.769 kb on - strand at 5679.814 kb on + strand at 5679.827 kb on + strand at 5679.843 kb on + strand at 5679.843 kb on + strand at 5679.867 kb on + strand at 5679.867 kb on + strand at 5679.867 kb on + strand at 5679.867 kb on + strand at 5679.867 kb on + strand at 5679.867 kb on + strand at 5679.895 kb on + strand at 5679.895 kb on + strand at 5679.898 kb on + strand at 5679.898 kb on + strand at 5679.898 kb on + strand at 5680.579 kb on + strand, within Pf6N2E2_4928 at 5680.580 kb on - strand, within Pf6N2E2_4928
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,679,067 + -0.7 5,679,068 - +0.3 5,679,068 - +1.7 5,679,068 - +1.6 5,679,086 - -0.9 5,679,203 + Pf6N2E2_4926 0.15 +2.6 5,679,361 - Pf6N2E2_4926 0.37 -0.7 5,679,361 - Pf6N2E2_4926 0.37 -0.2 5,679,374 + Pf6N2E2_4926 0.39 +1.8 5,679,374 + Pf6N2E2_4926 0.39 -0.2 5,679,374 + Pf6N2E2_4926 0.39 +1.3 5,679,374 + Pf6N2E2_4926 0.39 +2.0 5,679,374 + Pf6N2E2_4926 0.39 +2.6 5,679,374 + Pf6N2E2_4926 0.39 +1.4 5,679,374 + Pf6N2E2_4926 0.39 +0.3 5,679,374 + Pf6N2E2_4926 0.39 +2.0 5,679,374 + Pf6N2E2_4926 0.39 +0.5 5,679,374 + Pf6N2E2_4926 0.39 +1.2 5,679,375 - Pf6N2E2_4926 0.39 +0.8 5,679,375 - Pf6N2E2_4926 0.39 +0.8 5,679,375 - Pf6N2E2_4926 0.39 -1.0 5,679,375 - Pf6N2E2_4926 0.39 +0.9 5,679,375 - Pf6N2E2_4926 0.39 +2.0 5,679,375 - Pf6N2E2_4926 0.39 -0.2 5,679,375 - Pf6N2E2_4926 0.39 +2.4 5,679,375 - Pf6N2E2_4926 0.39 +2.6 5,679,375 - Pf6N2E2_4926 0.39 +1.3 5,679,375 - Pf6N2E2_4926 0.39 -0.4 5,679,375 - Pf6N2E2_4926 0.39 +1.9 5,679,375 - Pf6N2E2_4926 0.39 -0.5 5,679,378 + Pf6N2E2_4926 0.40 +2.1 5,679,378 + Pf6N2E2_4926 0.40 +1.4 5,679,378 + Pf6N2E2_4926 0.40 +2.5 5,679,378 + Pf6N2E2_4926 0.40 +1.1 5,679,378 + Pf6N2E2_4926 0.40 -0.7 5,679,379 - Pf6N2E2_4926 0.40 +2.3 5,679,379 - Pf6N2E2_4926 0.40 +1.3 5,679,379 - Pf6N2E2_4926 0.40 +0.1 5,679,379 - Pf6N2E2_4926 0.40 +0.9 5,679,379 - Pf6N2E2_4926 0.40 -0.4 5,679,379 - Pf6N2E2_4926 0.40 +0.7 5,679,379 - Pf6N2E2_4926 0.40 +0.6 5,679,379 - Pf6N2E2_4926 0.40 +3.4 5,679,379 - Pf6N2E2_4926 0.40 +2.2 5,679,379 - Pf6N2E2_4926 0.40 +2.5 5,679,432 + Pf6N2E2_4926 0.47 -0.0 5,679,433 - Pf6N2E2_4926 0.47 +3.4 5,679,433 - Pf6N2E2_4926 0.47 +0.4 5,679,462 + Pf6N2E2_4926 0.51 +0.8 5,679,462 + Pf6N2E2_4926 0.51 -0.0 5,679,471 + Pf6N2E2_4926 0.53 +1.3 5,679,471 + Pf6N2E2_4926 0.53 -0.8 5,679,471 + Pf6N2E2_4926 0.53 +1.3 5,679,472 - Pf6N2E2_4926 0.53 +3.0 5,679,472 - Pf6N2E2_4926 0.53 +2.7 5,679,472 - Pf6N2E2_4926 0.53 +1.8 5,679,472 - Pf6N2E2_4926 0.53 -0.9 5,679,515 - Pf6N2E2_4926 0.59 +1.8 5,679,518 + Pf6N2E2_4926 0.59 +0.2 5,679,518 + Pf6N2E2_4926 0.59 +1.0 5,679,518 + Pf6N2E2_4926 0.59 +2.4 5,679,519 - Pf6N2E2_4926 0.59 +2.2 5,679,519 - Pf6N2E2_4926 0.59 +1.2 5,679,555 + Pf6N2E2_4926 0.65 +1.4 5,679,556 - Pf6N2E2_4926 0.65 +1.1 5,679,648 + Pf6N2E2_4926 0.78 +1.5 5,679,680 + Pf6N2E2_4926 0.82 +2.7 5,679,680 + Pf6N2E2_4926 0.82 +0.6 5,679,680 + Pf6N2E2_4926 0.82 +1.8 5,679,681 - Pf6N2E2_4926 0.82 +1.0 5,679,768 + +0.4 5,679,769 - -1.2 5,679,814 + +0.9 5,679,827 + +0.5 5,679,843 + -0.4 5,679,843 + +0.9 5,679,867 + -1.7 5,679,867 + +0.5 5,679,867 + +0.7 5,679,867 + +1.4 5,679,867 + +0.1 5,679,867 + +0.1 5,679,895 + +0.2 5,679,895 + +0.7 5,679,898 + +0.1 5,679,898 + -0.8 5,679,898 + +0.3 5,680,579 + Pf6N2E2_4928 0.11 +1.3 5,680,580 - Pf6N2E2_4928 0.12 +1.8
Or see this region's nucleotide sequence