Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4926

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4924 and Pf6N2E2_4925 overlap by 4 nucleotidesPf6N2E2_4925 and Pf6N2E2_4926 are separated by 59 nucleotidesPf6N2E2_4926 and Pf6N2E2_4927 are separated by 110 nucleotidesPf6N2E2_4927 and Pf6N2E2_4928 overlap by 4 nucleotides Pf6N2E2_4924 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 5,677,571 to 5,678,536 _4924 Pf6N2E2_4925 - Phosphatidylglycerophosphatase A (EC 3.1.3.27), at 5,678,533 to 5,679,036 _4925 Pf6N2E2_4926 - hypothetical protein, at 5,679,096 to 5,679,806 _4926 Pf6N2E2_4927 - GTP cyclohydrolase II (EC 3.5.4.25), at 5,679,917 to 5,680,534 _4927 Pf6N2E2_4928 - Permeases of the major facilitator superfamily, at 5,680,531 to 5,680,950 _4928 Position (kb) 5679 5680Strain fitness (log2 ratio) -1 0 1 2 3at 5679.067 kb on + strandat 5679.068 kb on - strandat 5679.068 kb on - strandat 5679.068 kb on - strandat 5679.086 kb on - strandat 5679.203 kb on + strand, within Pf6N2E2_4926at 5679.361 kb on - strand, within Pf6N2E2_4926at 5679.361 kb on - strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.374 kb on + strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.375 kb on - strand, within Pf6N2E2_4926at 5679.378 kb on + strand, within Pf6N2E2_4926at 5679.378 kb on + strand, within Pf6N2E2_4926at 5679.378 kb on + strand, within Pf6N2E2_4926at 5679.378 kb on + strand, within Pf6N2E2_4926at 5679.378 kb on + strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.379 kb on - strand, within Pf6N2E2_4926at 5679.432 kb on + strand, within Pf6N2E2_4926at 5679.433 kb on - strand, within Pf6N2E2_4926at 5679.433 kb on - strand, within Pf6N2E2_4926at 5679.462 kb on + strand, within Pf6N2E2_4926at 5679.462 kb on + strand, within Pf6N2E2_4926at 5679.471 kb on + strand, within Pf6N2E2_4926at 5679.471 kb on + strand, within Pf6N2E2_4926at 5679.471 kb on + strand, within Pf6N2E2_4926at 5679.472 kb on - strand, within Pf6N2E2_4926at 5679.472 kb on - strand, within Pf6N2E2_4926at 5679.472 kb on - strand, within Pf6N2E2_4926at 5679.472 kb on - strand, within Pf6N2E2_4926at 5679.515 kb on - strand, within Pf6N2E2_4926at 5679.518 kb on + strand, within Pf6N2E2_4926at 5679.518 kb on + strand, within Pf6N2E2_4926at 5679.518 kb on + strand, within Pf6N2E2_4926at 5679.519 kb on - strand, within Pf6N2E2_4926at 5679.519 kb on - strand, within Pf6N2E2_4926at 5679.555 kb on + strand, within Pf6N2E2_4926at 5679.556 kb on - strand, within Pf6N2E2_4926at 5679.648 kb on + strand, within Pf6N2E2_4926at 5679.680 kb on + strand, within Pf6N2E2_4926at 5679.680 kb on + strand, within Pf6N2E2_4926at 5679.680 kb on + strand, within Pf6N2E2_4926at 5679.681 kb on - strand, within Pf6N2E2_4926at 5679.768 kb on + strandat 5679.769 kb on - strandat 5679.814 kb on + strandat 5679.827 kb on + strandat 5679.843 kb on + strandat 5679.843 kb on + strandat 5679.867 kb on + strandat 5679.867 kb on + strandat 5679.867 kb on + strandat 5679.867 kb on + strandat 5679.867 kb on + strandat 5679.867 kb on + strandat 5679.895 kb on + strandat 5679.895 kb on + strandat 5679.898 kb on + strandat 5679.898 kb on + strandat 5679.898 kb on + strandat 5680.579 kb on + strand, within Pf6N2E2_4928at 5680.580 kb on - strand, within Pf6N2E2_4928

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,679,067 + -0.7
5,679,068 - +0.3
5,679,068 - +1.7
5,679,068 - +1.6
5,679,086 - -0.9
5,679,203 + Pf6N2E2_4926 0.15 +2.6
5,679,361 - Pf6N2E2_4926 0.37 -0.7
5,679,361 - Pf6N2E2_4926 0.37 -0.2
5,679,374 + Pf6N2E2_4926 0.39 +1.8
5,679,374 + Pf6N2E2_4926 0.39 -0.2
5,679,374 + Pf6N2E2_4926 0.39 +1.3
5,679,374 + Pf6N2E2_4926 0.39 +2.0
5,679,374 + Pf6N2E2_4926 0.39 +2.6
5,679,374 + Pf6N2E2_4926 0.39 +1.4
5,679,374 + Pf6N2E2_4926 0.39 +0.3
5,679,374 + Pf6N2E2_4926 0.39 +2.0
5,679,374 + Pf6N2E2_4926 0.39 +0.5
5,679,374 + Pf6N2E2_4926 0.39 +1.2
5,679,375 - Pf6N2E2_4926 0.39 +0.8
5,679,375 - Pf6N2E2_4926 0.39 +0.8
5,679,375 - Pf6N2E2_4926 0.39 -1.0
5,679,375 - Pf6N2E2_4926 0.39 +0.9
5,679,375 - Pf6N2E2_4926 0.39 +2.0
5,679,375 - Pf6N2E2_4926 0.39 -0.2
5,679,375 - Pf6N2E2_4926 0.39 +2.4
5,679,375 - Pf6N2E2_4926 0.39 +2.6
5,679,375 - Pf6N2E2_4926 0.39 +1.3
5,679,375 - Pf6N2E2_4926 0.39 -0.4
5,679,375 - Pf6N2E2_4926 0.39 +1.9
5,679,375 - Pf6N2E2_4926 0.39 -0.5
5,679,378 + Pf6N2E2_4926 0.40 +2.1
5,679,378 + Pf6N2E2_4926 0.40 +1.4
5,679,378 + Pf6N2E2_4926 0.40 +2.5
5,679,378 + Pf6N2E2_4926 0.40 +1.1
5,679,378 + Pf6N2E2_4926 0.40 -0.7
5,679,379 - Pf6N2E2_4926 0.40 +2.3
5,679,379 - Pf6N2E2_4926 0.40 +1.3
5,679,379 - Pf6N2E2_4926 0.40 +0.1
5,679,379 - Pf6N2E2_4926 0.40 +0.9
5,679,379 - Pf6N2E2_4926 0.40 -0.4
5,679,379 - Pf6N2E2_4926 0.40 +0.7
5,679,379 - Pf6N2E2_4926 0.40 +0.6
5,679,379 - Pf6N2E2_4926 0.40 +3.4
5,679,379 - Pf6N2E2_4926 0.40 +2.2
5,679,379 - Pf6N2E2_4926 0.40 +2.5
5,679,432 + Pf6N2E2_4926 0.47 -0.0
5,679,433 - Pf6N2E2_4926 0.47 +3.4
5,679,433 - Pf6N2E2_4926 0.47 +0.4
5,679,462 + Pf6N2E2_4926 0.51 +0.8
5,679,462 + Pf6N2E2_4926 0.51 -0.0
5,679,471 + Pf6N2E2_4926 0.53 +1.3
5,679,471 + Pf6N2E2_4926 0.53 -0.8
5,679,471 + Pf6N2E2_4926 0.53 +1.3
5,679,472 - Pf6N2E2_4926 0.53 +3.0
5,679,472 - Pf6N2E2_4926 0.53 +2.7
5,679,472 - Pf6N2E2_4926 0.53 +1.8
5,679,472 - Pf6N2E2_4926 0.53 -0.9
5,679,515 - Pf6N2E2_4926 0.59 +1.8
5,679,518 + Pf6N2E2_4926 0.59 +0.2
5,679,518 + Pf6N2E2_4926 0.59 +1.0
5,679,518 + Pf6N2E2_4926 0.59 +2.4
5,679,519 - Pf6N2E2_4926 0.59 +2.2
5,679,519 - Pf6N2E2_4926 0.59 +1.2
5,679,555 + Pf6N2E2_4926 0.65 +1.4
5,679,556 - Pf6N2E2_4926 0.65 +1.1
5,679,648 + Pf6N2E2_4926 0.78 +1.5
5,679,680 + Pf6N2E2_4926 0.82 +2.7
5,679,680 + Pf6N2E2_4926 0.82 +0.6
5,679,680 + Pf6N2E2_4926 0.82 +1.8
5,679,681 - Pf6N2E2_4926 0.82 +1.0
5,679,768 + +0.4
5,679,769 - -1.2
5,679,814 + +0.9
5,679,827 + +0.5
5,679,843 + -0.4
5,679,843 + +0.9
5,679,867 + -1.7
5,679,867 + +0.5
5,679,867 + +0.7
5,679,867 + +1.4
5,679,867 + +0.1
5,679,867 + +0.1
5,679,895 + +0.2
5,679,895 + +0.7
5,679,898 + +0.1
5,679,898 + -0.8
5,679,898 + +0.3
5,680,579 + Pf6N2E2_4928 0.11 +1.3
5,680,580 - Pf6N2E2_4928 0.12 +1.8

Or see this region's nucleotide sequence