Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4339

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4337 and Pf6N2E2_4338 are separated by 68 nucleotidesPf6N2E2_4338 and Pf6N2E2_4339 are separated by 15 nucleotidesPf6N2E2_4339 and Pf6N2E2_4340 are separated by 6 nucleotides Pf6N2E2_4337 - Uncharacterized protein ImpI/VasC, at 5,059,719 to 5,061,218 _4337 Pf6N2E2_4338 - Type VI secretion lipoprotein/VasD, at 5,061,287 to 5,061,793 _4338 Pf6N2E2_4339 - Uncharacterized protein ImpJ/VasE, at 5,061,809 to 5,063,143 _4339 Pf6N2E2_4340 - Outer membrane protein ImpK/VasF, OmpA/MotB domain, at 5,063,150 to 5,064,460 _4340 Position (kb) 5061 5062 5063 5064Strain fitness (log2 ratio) -2 -1 0 1 2at 5061.104 kb on + strandat 5061.105 kb on - strandat 5061.115 kb on - strandat 5061.115 kb on - strandat 5061.115 kb on - strandat 5061.115 kb on - strandat 5061.183 kb on + strandat 5061.260 kb on + strandat 5061.261 kb on - strandat 5061.638 kb on - strand, within Pf6N2E2_4338at 5061.645 kb on + strand, within Pf6N2E2_4338at 5061.646 kb on - strand, within Pf6N2E2_4338at 5061.713 kb on + strand, within Pf6N2E2_4338at 5061.714 kb on - strand, within Pf6N2E2_4338at 5061.723 kb on - strand, within Pf6N2E2_4338at 5062.103 kb on + strand, within Pf6N2E2_4339at 5062.104 kb on - strand, within Pf6N2E2_4339at 5062.104 kb on - strand, within Pf6N2E2_4339at 5062.104 kb on - strand, within Pf6N2E2_4339at 5062.104 kb on - strand, within Pf6N2E2_4339at 5062.178 kb on + strand, within Pf6N2E2_4339at 5062.178 kb on + strand, within Pf6N2E2_4339at 5062.179 kb on - strand, within Pf6N2E2_4339at 5062.179 kb on - strand, within Pf6N2E2_4339at 5062.179 kb on - strand, within Pf6N2E2_4339at 5062.179 kb on - strand, within Pf6N2E2_4339at 5062.179 kb on - strand, within Pf6N2E2_4339at 5062.179 kb on - strand, within Pf6N2E2_4339at 5062.295 kb on + strand, within Pf6N2E2_4339at 5062.364 kb on + strand, within Pf6N2E2_4339at 5062.364 kb on + strand, within Pf6N2E2_4339at 5062.364 kb on + strand, within Pf6N2E2_4339at 5062.364 kb on + strand, within Pf6N2E2_4339at 5062.364 kb on + strand, within Pf6N2E2_4339at 5062.364 kb on + strand, within Pf6N2E2_4339at 5062.364 kb on + strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.365 kb on - strand, within Pf6N2E2_4339at 5062.595 kb on + strand, within Pf6N2E2_4339at 5062.595 kb on + strand, within Pf6N2E2_4339at 5062.673 kb on + strand, within Pf6N2E2_4339at 5062.700 kb on + strand, within Pf6N2E2_4339at 5062.700 kb on + strand, within Pf6N2E2_4339at 5062.701 kb on - strand, within Pf6N2E2_4339at 5062.787 kb on + strand, within Pf6N2E2_4339at 5063.003 kb on + strand, within Pf6N2E2_4339at 5063.021 kb on + strandat 5063.021 kb on + strandat 5063.022 kb on - strandat 5063.024 kb on + strandat 5063.024 kb on + strandat 5063.024 kb on + strandat 5063.025 kb on - strandat 5063.025 kb on - strandat 5063.025 kb on - strandat 5063.025 kb on - strandat 5063.025 kb on - strandat 5063.167 kb on + strandat 5063.648 kb on + strand, within Pf6N2E2_4340at 5063.648 kb on + strand, within Pf6N2E2_4340at 5063.648 kb on + strand, within Pf6N2E2_4340at 5063.648 kb on + strand, within Pf6N2E2_4340at 5063.648 kb on + strand, within Pf6N2E2_4340at 5063.649 kb on - strand, within Pf6N2E2_4340at 5063.667 kb on - strand, within Pf6N2E2_4340at 5063.783 kb on + strand, within Pf6N2E2_4340at 5063.784 kb on - strand, within Pf6N2E2_4340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,061,104 + -1.9
5,061,105 - -1.0
5,061,115 - -0.8
5,061,115 - +1.0
5,061,115 - +1.4
5,061,115 - +1.6
5,061,183 + -1.1
5,061,260 + +0.5
5,061,261 - +1.1
5,061,638 - Pf6N2E2_4338 0.69 +0.6
5,061,645 + Pf6N2E2_4338 0.71 -1.8
5,061,646 - Pf6N2E2_4338 0.71 +1.2
5,061,713 + Pf6N2E2_4338 0.84 +0.2
5,061,714 - Pf6N2E2_4338 0.84 +1.1
5,061,723 - Pf6N2E2_4338 0.86 +1.5
5,062,103 + Pf6N2E2_4339 0.22 +0.7
5,062,104 - Pf6N2E2_4339 0.22 +1.3
5,062,104 - Pf6N2E2_4339 0.22 +1.8
5,062,104 - Pf6N2E2_4339 0.22 +0.4
5,062,104 - Pf6N2E2_4339 0.22 +0.5
5,062,178 + Pf6N2E2_4339 0.28 +1.9
5,062,178 + Pf6N2E2_4339 0.28 -0.4
5,062,179 - Pf6N2E2_4339 0.28 +0.1
5,062,179 - Pf6N2E2_4339 0.28 +2.0
5,062,179 - Pf6N2E2_4339 0.28 +2.3
5,062,179 - Pf6N2E2_4339 0.28 +1.4
5,062,179 - Pf6N2E2_4339 0.28 +1.9
5,062,179 - Pf6N2E2_4339 0.28 +1.6
5,062,295 + Pf6N2E2_4339 0.36 +1.9
5,062,364 + Pf6N2E2_4339 0.42 +2.1
5,062,364 + Pf6N2E2_4339 0.42 -2.4
5,062,364 + Pf6N2E2_4339 0.42 -0.4
5,062,364 + Pf6N2E2_4339 0.42 +2.5
5,062,364 + Pf6N2E2_4339 0.42 +0.0
5,062,364 + Pf6N2E2_4339 0.42 +1.9
5,062,364 + Pf6N2E2_4339 0.42 +0.5
5,062,365 - Pf6N2E2_4339 0.42 +1.6
5,062,365 - Pf6N2E2_4339 0.42 +1.8
5,062,365 - Pf6N2E2_4339 0.42 +1.0
5,062,365 - Pf6N2E2_4339 0.42 +1.5
5,062,365 - Pf6N2E2_4339 0.42 +1.0
5,062,365 - Pf6N2E2_4339 0.42 -1.4
5,062,365 - Pf6N2E2_4339 0.42 +1.9
5,062,365 - Pf6N2E2_4339 0.42 +1.3
5,062,595 + Pf6N2E2_4339 0.59 +1.4
5,062,595 + Pf6N2E2_4339 0.59 +0.5
5,062,673 + Pf6N2E2_4339 0.65 -0.5
5,062,700 + Pf6N2E2_4339 0.67 -0.1
5,062,700 + Pf6N2E2_4339 0.67 +0.8
5,062,701 - Pf6N2E2_4339 0.67 +0.6
5,062,787 + Pf6N2E2_4339 0.73 +1.3
5,063,003 + Pf6N2E2_4339 0.89 -1.9
5,063,021 + +1.0
5,063,021 + +1.1
5,063,022 - -0.3
5,063,024 + +1.4
5,063,024 + +0.3
5,063,024 + -0.0
5,063,025 - +1.1
5,063,025 - +1.9
5,063,025 - +1.7
5,063,025 - +1.0
5,063,025 - +0.3
5,063,167 + -1.0
5,063,648 + Pf6N2E2_4340 0.38 +0.7
5,063,648 + Pf6N2E2_4340 0.38 +2.6
5,063,648 + Pf6N2E2_4340 0.38 -0.1
5,063,648 + Pf6N2E2_4340 0.38 +1.3
5,063,648 + Pf6N2E2_4340 0.38 +1.0
5,063,649 - Pf6N2E2_4340 0.38 +1.6
5,063,667 - Pf6N2E2_4340 0.39 +0.3
5,063,783 + Pf6N2E2_4340 0.48 +0.4
5,063,784 - Pf6N2E2_4340 0.48 +2.3

Or see this region's nucleotide sequence