Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4337 and Pf6N2E2_4338 are separated by 68 nucleotides Pf6N2E2_4338 and Pf6N2E2_4339 are separated by 15 nucleotides Pf6N2E2_4339 and Pf6N2E2_4340 are separated by 6 nucleotides
Pf6N2E2_4337 - Uncharacterized protein ImpI/VasC, at 5,059,719 to 5,061,218
_4337
Pf6N2E2_4338 - Type VI secretion lipoprotein/VasD, at 5,061,287 to 5,061,793
_4338
Pf6N2E2_4339 - Uncharacterized protein ImpJ/VasE, at 5,061,809 to 5,063,143
_4339
Pf6N2E2_4340 - Outer membrane protein ImpK/VasF, OmpA/MotB domain, at 5,063,150 to 5,064,460
_4340
Position (kb)
5061
5062
5063
5064 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5061.104 kb on + strand at 5061.105 kb on - strand at 5061.115 kb on - strand at 5061.115 kb on - strand at 5061.115 kb on - strand at 5061.115 kb on - strand at 5061.183 kb on + strand at 5061.260 kb on + strand at 5061.261 kb on - strand at 5061.638 kb on - strand, within Pf6N2E2_4338 at 5061.645 kb on + strand, within Pf6N2E2_4338 at 5061.646 kb on - strand, within Pf6N2E2_4338 at 5061.713 kb on + strand, within Pf6N2E2_4338 at 5061.714 kb on - strand, within Pf6N2E2_4338 at 5061.723 kb on - strand, within Pf6N2E2_4338 at 5062.103 kb on + strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.104 kb on - strand, within Pf6N2E2_4339 at 5062.178 kb on + strand, within Pf6N2E2_4339 at 5062.178 kb on + strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.179 kb on - strand, within Pf6N2E2_4339 at 5062.295 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.364 kb on + strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.365 kb on - strand, within Pf6N2E2_4339 at 5062.595 kb on + strand, within Pf6N2E2_4339 at 5062.595 kb on + strand, within Pf6N2E2_4339 at 5062.673 kb on + strand, within Pf6N2E2_4339 at 5062.700 kb on + strand, within Pf6N2E2_4339 at 5062.700 kb on + strand, within Pf6N2E2_4339 at 5062.701 kb on - strand, within Pf6N2E2_4339 at 5062.787 kb on + strand, within Pf6N2E2_4339 at 5063.003 kb on + strand, within Pf6N2E2_4339 at 5063.021 kb on + strand at 5063.021 kb on + strand at 5063.022 kb on - strand at 5063.024 kb on + strand at 5063.024 kb on + strand at 5063.024 kb on + strand at 5063.025 kb on - strand at 5063.025 kb on - strand at 5063.025 kb on - strand at 5063.025 kb on - strand at 5063.025 kb on - strand at 5063.167 kb on + strand at 5063.648 kb on + strand, within Pf6N2E2_4340 at 5063.648 kb on + strand, within Pf6N2E2_4340 at 5063.648 kb on + strand, within Pf6N2E2_4340 at 5063.648 kb on + strand, within Pf6N2E2_4340 at 5063.648 kb on + strand, within Pf6N2E2_4340 at 5063.649 kb on - strand, within Pf6N2E2_4340 at 5063.667 kb on - strand, within Pf6N2E2_4340 at 5063.783 kb on + strand, within Pf6N2E2_4340 at 5063.784 kb on - strand, within Pf6N2E2_4340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 5,061,104 + -1.9 5,061,105 - -1.0 5,061,115 - -0.8 5,061,115 - +1.0 5,061,115 - +1.4 5,061,115 - +1.6 5,061,183 + -1.1 5,061,260 + +0.5 5,061,261 - +1.1 5,061,638 - Pf6N2E2_4338 0.69 +0.6 5,061,645 + Pf6N2E2_4338 0.71 -1.8 5,061,646 - Pf6N2E2_4338 0.71 +1.2 5,061,713 + Pf6N2E2_4338 0.84 +0.2 5,061,714 - Pf6N2E2_4338 0.84 +1.1 5,061,723 - Pf6N2E2_4338 0.86 +1.5 5,062,103 + Pf6N2E2_4339 0.22 +0.7 5,062,104 - Pf6N2E2_4339 0.22 +1.3 5,062,104 - Pf6N2E2_4339 0.22 +1.8 5,062,104 - Pf6N2E2_4339 0.22 +0.4 5,062,104 - Pf6N2E2_4339 0.22 +0.5 5,062,178 + Pf6N2E2_4339 0.28 +1.9 5,062,178 + Pf6N2E2_4339 0.28 -0.4 5,062,179 - Pf6N2E2_4339 0.28 +0.1 5,062,179 - Pf6N2E2_4339 0.28 +2.0 5,062,179 - Pf6N2E2_4339 0.28 +2.3 5,062,179 - Pf6N2E2_4339 0.28 +1.4 5,062,179 - Pf6N2E2_4339 0.28 +1.9 5,062,179 - Pf6N2E2_4339 0.28 +1.6 5,062,295 + Pf6N2E2_4339 0.36 +1.9 5,062,364 + Pf6N2E2_4339 0.42 +2.1 5,062,364 + Pf6N2E2_4339 0.42 -2.4 5,062,364 + Pf6N2E2_4339 0.42 -0.4 5,062,364 + Pf6N2E2_4339 0.42 +2.5 5,062,364 + Pf6N2E2_4339 0.42 +0.0 5,062,364 + Pf6N2E2_4339 0.42 +1.9 5,062,364 + Pf6N2E2_4339 0.42 +0.5 5,062,365 - Pf6N2E2_4339 0.42 +1.6 5,062,365 - Pf6N2E2_4339 0.42 +1.8 5,062,365 - Pf6N2E2_4339 0.42 +1.0 5,062,365 - Pf6N2E2_4339 0.42 +1.5 5,062,365 - Pf6N2E2_4339 0.42 +1.0 5,062,365 - Pf6N2E2_4339 0.42 -1.4 5,062,365 - Pf6N2E2_4339 0.42 +1.9 5,062,365 - Pf6N2E2_4339 0.42 +1.3 5,062,595 + Pf6N2E2_4339 0.59 +1.4 5,062,595 + Pf6N2E2_4339 0.59 +0.5 5,062,673 + Pf6N2E2_4339 0.65 -0.5 5,062,700 + Pf6N2E2_4339 0.67 -0.1 5,062,700 + Pf6N2E2_4339 0.67 +0.8 5,062,701 - Pf6N2E2_4339 0.67 +0.6 5,062,787 + Pf6N2E2_4339 0.73 +1.3 5,063,003 + Pf6N2E2_4339 0.89 -1.9 5,063,021 + +1.0 5,063,021 + +1.1 5,063,022 - -0.3 5,063,024 + +1.4 5,063,024 + +0.3 5,063,024 + -0.0 5,063,025 - +1.1 5,063,025 - +1.9 5,063,025 - +1.7 5,063,025 - +1.0 5,063,025 - +0.3 5,063,167 + -1.0 5,063,648 + Pf6N2E2_4340 0.38 +0.7 5,063,648 + Pf6N2E2_4340 0.38 +2.6 5,063,648 + Pf6N2E2_4340 0.38 -0.1 5,063,648 + Pf6N2E2_4340 0.38 +1.3 5,063,648 + Pf6N2E2_4340 0.38 +1.0 5,063,649 - Pf6N2E2_4340 0.38 +1.6 5,063,667 - Pf6N2E2_4340 0.39 +0.3 5,063,783 + Pf6N2E2_4340 0.48 +0.4 5,063,784 - Pf6N2E2_4340 0.48 +2.3
Or see this region's nucleotide sequence