Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_39 and Pf6N2E2_40 overlap by 1 nucleotides Pf6N2E2_40 and Pf6N2E2_41 overlap by 1 nucleotides Pf6N2E2_41 and Pf6N2E2_42 overlap by 4 nucleotides Pf6N2E2_42 and Pf6N2E2_43 are separated by 250 nucleotides
Pf6N2E2_39 - FIG00857858: hypothetical protein, at 78,501 to 78,809
_39
Pf6N2E2_40 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 78,809 to 79,120
_40
Pf6N2E2_41 - Two-component system response regulator QseB, at 79,120 to 79,788
_41
Pf6N2E2_42 - Sensor protein PhoQ (EC 2.7.13.3), at 79,785 to 81,098
_42
Pf6N2E2_43 - Histidine permease YuiF, at 81,349 to 82,668
_43
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 78.804 kb on - strand at 78.807 kb on + strand at 78.808 kb on - strand at 78.808 kb on - strand at 78.833 kb on - strand at 79.023 kb on - strand, within Pf6N2E2_40 at 79.023 kb on - strand, within Pf6N2E2_40 at 79.023 kb on - strand, within Pf6N2E2_40 at 79.025 kb on - strand, within Pf6N2E2_40 at 79.025 kb on - strand, within Pf6N2E2_40 at 79.025 kb on - strand, within Pf6N2E2_40 at 79.029 kb on - strand, within Pf6N2E2_40 at 79.099 kb on - strand at 79.108 kb on + strand at 79.109 kb on - strand at 79.230 kb on - strand, within Pf6N2E2_41 at 79.232 kb on - strand, within Pf6N2E2_41 at 79.252 kb on + strand, within Pf6N2E2_41 at 79.253 kb on - strand, within Pf6N2E2_41 at 79.411 kb on + strand, within Pf6N2E2_41 at 79.600 kb on + strand, within Pf6N2E2_41 at 79.600 kb on + strand, within Pf6N2E2_41 at 79.601 kb on - strand, within Pf6N2E2_41 at 79.601 kb on - strand, within Pf6N2E2_41 at 79.632 kb on + strand, within Pf6N2E2_41 at 79.633 kb on - strand, within Pf6N2E2_41 at 79.658 kb on - strand, within Pf6N2E2_41 at 79.658 kb on - strand, within Pf6N2E2_41 at 79.999 kb on - strand, within Pf6N2E2_42 at 80.023 kb on - strand, within Pf6N2E2_42 at 80.023 kb on - strand, within Pf6N2E2_42 at 80.023 kb on - strand, within Pf6N2E2_42 at 80.211 kb on + strand, within Pf6N2E2_42 at 80.212 kb on - strand, within Pf6N2E2_42 at 80.212 kb on - strand, within Pf6N2E2_42 at 80.278 kb on + strand, within Pf6N2E2_42 at 80.748 kb on + strand, within Pf6N2E2_42 at 80.749 kb on - strand, within Pf6N2E2_42 at 81.170 kb on + strand at 81.170 kb on + strand at 81.170 kb on + strand at 81.171 kb on - strand at 81.171 kb on - strand at 81.171 kb on - strand at 81.344 kb on + strand at 81.344 kb on + strand at 81.344 kb on + strand at 81.344 kb on + strand at 81.345 kb on - strand at 81.353 kb on + strand at 81.353 kb on + strand at 81.353 kb on + strand at 81.354 kb on - strand at 81.354 kb on - strand at 81.354 kb on - strand at 81.354 kb on - strand at 81.362 kb on + strand at 81.362 kb on + strand at 81.429 kb on + strand at 81.532 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.752 kb on - strand, within Pf6N2E2_43 at 81.752 kb on - strand, within Pf6N2E2_43 at 81.752 kb on - strand, within Pf6N2E2_43 at 81.823 kb on + strand, within Pf6N2E2_43 at 81.823 kb on + strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 82.003 kb on + strand, within Pf6N2E2_43 at 82.049 kb on - strand, within Pf6N2E2_43
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 78,804 - +0.8 78,807 + -0.6 78,808 - -1.0 78,808 - +0.7 78,833 - -1.5 79,023 - Pf6N2E2_40 0.69 +2.3 79,023 - Pf6N2E2_40 0.69 -1.0 79,023 - Pf6N2E2_40 0.69 -0.9 79,025 - Pf6N2E2_40 0.69 +2.3 79,025 - Pf6N2E2_40 0.69 -0.8 79,025 - Pf6N2E2_40 0.69 +0.3 79,029 - Pf6N2E2_40 0.71 +0.4 79,099 - -0.2 79,108 + +0.7 79,109 - +0.8 79,230 - Pf6N2E2_41 0.16 -1.9 79,232 - Pf6N2E2_41 0.17 +3.0 79,252 + Pf6N2E2_41 0.20 +0.2 79,253 - Pf6N2E2_41 0.20 -1.0 79,411 + Pf6N2E2_41 0.43 +1.0 79,600 + Pf6N2E2_41 0.72 -0.8 79,600 + Pf6N2E2_41 0.72 +0.5 79,601 - Pf6N2E2_41 0.72 -2.6 79,601 - Pf6N2E2_41 0.72 -0.0 79,632 + Pf6N2E2_41 0.77 -0.8 79,633 - Pf6N2E2_41 0.77 -0.3 79,658 - Pf6N2E2_41 0.80 -2.2 79,658 - Pf6N2E2_41 0.80 -0.1 79,999 - Pf6N2E2_42 0.16 -1.5 80,023 - Pf6N2E2_42 0.18 -1.1 80,023 - Pf6N2E2_42 0.18 +0.4 80,023 - Pf6N2E2_42 0.18 -0.3 80,211 + Pf6N2E2_42 0.32 -0.1 80,212 - Pf6N2E2_42 0.32 +0.3 80,212 - Pf6N2E2_42 0.32 +0.4 80,278 + Pf6N2E2_42 0.38 +0.5 80,748 + Pf6N2E2_42 0.73 +0.8 80,749 - Pf6N2E2_42 0.73 -1.1 81,170 + -0.3 81,170 + -0.7 81,170 + -1.7 81,171 - -0.2 81,171 - +0.4 81,171 - +0.3 81,344 + +2.5 81,344 + -0.8 81,344 + +0.3 81,344 + +1.3 81,345 - +1.1 81,353 + +2.1 81,353 + +3.3 81,353 + +0.6 81,354 - +2.3 81,354 - +1.4 81,354 - +1.3 81,354 - +1.8 81,362 + +2.7 81,362 + +3.0 81,429 + +2.1 81,532 + Pf6N2E2_43 0.14 -1.1 81,751 + Pf6N2E2_43 0.30 +1.9 81,751 + Pf6N2E2_43 0.30 -1.4 81,751 + Pf6N2E2_43 0.30 +0.8 81,751 + Pf6N2E2_43 0.30 +1.5 81,751 + Pf6N2E2_43 0.30 +2.0 81,752 - Pf6N2E2_43 0.31 +0.8 81,752 - Pf6N2E2_43 0.31 +2.8 81,752 - Pf6N2E2_43 0.31 +2.9 81,823 + Pf6N2E2_43 0.36 +2.3 81,823 + Pf6N2E2_43 0.36 +1.1 81,824 - Pf6N2E2_43 0.36 -0.2 81,824 - Pf6N2E2_43 0.36 +2.7 81,824 - Pf6N2E2_43 0.36 +2.6 81,824 - Pf6N2E2_43 0.36 +2.7 82,003 + Pf6N2E2_43 0.50 -0.4 82,049 - Pf6N2E2_43 0.53 -1.5
Or see this region's nucleotide sequence