Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3621

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3620 and Pf6N2E2_3621 overlap by 19 nucleotidesPf6N2E2_3621 and Pf6N2E2_3622 are separated by 264 nucleotidesPf6N2E2_3622 and Pf6N2E2_3623 are separated by 109 nucleotides Pf6N2E2_3620 - Epoxyqueuosine (oQ) reductase QueG, at 4,215,840 to 4,216,919 _3620 Pf6N2E2_3621 - putative transporter, required for glycine utilization (from data), at 4,216,901 to 4,217,512 _3621 Pf6N2E2_3622 - 3'-to-5' oligoribonuclease (orn), at 4,217,777 to 4,218,319 _3622 Pf6N2E2_3623 - Ribosome small subunit-stimulated GTPase EngC, at 4,218,429 to 4,219,460 _3623 Position (kb) 4216 4217 4218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4216.002 kb on + strand, within Pf6N2E2_3620at 4216.002 kb on + strand, within Pf6N2E2_3620at 4216.002 kb on + strand, within Pf6N2E2_3620at 4216.003 kb on - strand, within Pf6N2E2_3620at 4216.003 kb on - strand, within Pf6N2E2_3620at 4216.003 kb on - strand, within Pf6N2E2_3620at 4216.003 kb on - strand, within Pf6N2E2_3620at 4216.087 kb on - strand, within Pf6N2E2_3620at 4216.087 kb on - strand, within Pf6N2E2_3620at 4216.087 kb on - strand, within Pf6N2E2_3620at 4216.140 kb on + strand, within Pf6N2E2_3620at 4216.140 kb on + strand, within Pf6N2E2_3620at 4216.140 kb on + strand, within Pf6N2E2_3620at 4216.141 kb on - strand, within Pf6N2E2_3620at 4216.141 kb on - strand, within Pf6N2E2_3620at 4216.141 kb on - strand, within Pf6N2E2_3620at 4216.152 kb on + strand, within Pf6N2E2_3620at 4216.170 kb on + strand, within Pf6N2E2_3620at 4216.317 kb on - strand, within Pf6N2E2_3620at 4216.353 kb on + strand, within Pf6N2E2_3620at 4216.353 kb on + strand, within Pf6N2E2_3620at 4216.353 kb on + strand, within Pf6N2E2_3620at 4216.354 kb on - strand, within Pf6N2E2_3620at 4216.457 kb on + strand, within Pf6N2E2_3620at 4216.457 kb on + strand, within Pf6N2E2_3620at 4216.457 kb on + strand, within Pf6N2E2_3620at 4216.458 kb on - strand, within Pf6N2E2_3620at 4216.479 kb on + strand, within Pf6N2E2_3620at 4216.479 kb on + strand, within Pf6N2E2_3620at 4216.480 kb on - strand, within Pf6N2E2_3620at 4216.988 kb on - strand, within Pf6N2E2_3621at 4216.988 kb on - strand, within Pf6N2E2_3621at 4216.988 kb on - strand, within Pf6N2E2_3621at 4217.037 kb on + strand, within Pf6N2E2_3621at 4217.037 kb on + strand, within Pf6N2E2_3621at 4217.037 kb on + strand, within Pf6N2E2_3621at 4217.037 kb on + strand, within Pf6N2E2_3621at 4217.037 kb on + strand, within Pf6N2E2_3621at 4217.037 kb on + strand, within Pf6N2E2_3621at 4217.037 kb on + strand, within Pf6N2E2_3621at 4217.070 kb on + strand, within Pf6N2E2_3621at 4217.070 kb on + strand, within Pf6N2E2_3621at 4217.070 kb on + strand, within Pf6N2E2_3621at 4217.071 kb on - strand, within Pf6N2E2_3621at 4217.071 kb on - strand, within Pf6N2E2_3621at 4217.071 kb on - strand, within Pf6N2E2_3621at 4217.099 kb on - strand, within Pf6N2E2_3621at 4217.099 kb on - strand, within Pf6N2E2_3621at 4217.321 kb on + strand, within Pf6N2E2_3621at 4217.321 kb on + strand, within Pf6N2E2_3621at 4217.322 kb on - strand, within Pf6N2E2_3621at 4217.322 kb on - strand, within Pf6N2E2_3621at 4217.322 kb on - strand, within Pf6N2E2_3621at 4217.322 kb on - strand, within Pf6N2E2_3621at 4217.326 kb on - strand, within Pf6N2E2_3621at 4217.326 kb on - strand, within Pf6N2E2_3621at 4217.496 kb on + strandat 4217.496 kb on + strandat 4217.496 kb on + strandat 4217.497 kb on - strandat 4217.598 kb on + strandat 4217.598 kb on + strandat 4217.598 kb on + strandat 4217.599 kb on - strandat 4217.599 kb on - strandat 4218.338 kb on - strandat 4218.338 kb on - strandat 4218.350 kb on + strandat 4218.351 kb on - strandat 4218.351 kb on - strandat 4218.355 kb on + strandat 4218.356 kb on - strandat 4218.356 kb on - strandat 4218.394 kb on - strandat 4218.398 kb on + strandat 4218.398 kb on + strandat 4218.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,216,002 + Pf6N2E2_3620 0.15 -1.1
4,216,002 + Pf6N2E2_3620 0.15 +3.5
4,216,002 + Pf6N2E2_3620 0.15 +0.2
4,216,003 - Pf6N2E2_3620 0.15 -0.9
4,216,003 - Pf6N2E2_3620 0.15 -0.3
4,216,003 - Pf6N2E2_3620 0.15 +1.4
4,216,003 - Pf6N2E2_3620 0.15 -2.8
4,216,087 - Pf6N2E2_3620 0.23 +0.2
4,216,087 - Pf6N2E2_3620 0.23 +0.5
4,216,087 - Pf6N2E2_3620 0.23 -1.8
4,216,140 + Pf6N2E2_3620 0.28 +0.7
4,216,140 + Pf6N2E2_3620 0.28 -1.7
4,216,140 + Pf6N2E2_3620 0.28 +1.9
4,216,141 - Pf6N2E2_3620 0.28 -2.1
4,216,141 - Pf6N2E2_3620 0.28 -0.8
4,216,141 - Pf6N2E2_3620 0.28 -0.2
4,216,152 + Pf6N2E2_3620 0.29 +0.3
4,216,170 + Pf6N2E2_3620 0.31 -0.7
4,216,317 - Pf6N2E2_3620 0.44 +0.3
4,216,353 + Pf6N2E2_3620 0.47 +1.1
4,216,353 + Pf6N2E2_3620 0.47 +0.0
4,216,353 + Pf6N2E2_3620 0.47 -0.8
4,216,354 - Pf6N2E2_3620 0.48 -0.3
4,216,457 + Pf6N2E2_3620 0.57 +1.2
4,216,457 + Pf6N2E2_3620 0.57 +5.1
4,216,457 + Pf6N2E2_3620 0.57 +0.2
4,216,458 - Pf6N2E2_3620 0.57 -1.6
4,216,479 + Pf6N2E2_3620 0.59 -0.1
4,216,479 + Pf6N2E2_3620 0.59 -1.3
4,216,480 - Pf6N2E2_3620 0.59 -1.4
4,216,988 - Pf6N2E2_3621 0.14 +2.6
4,216,988 - Pf6N2E2_3621 0.14 +2.4
4,216,988 - Pf6N2E2_3621 0.14 +2.6
4,217,037 + Pf6N2E2_3621 0.22 +2.8
4,217,037 + Pf6N2E2_3621 0.22 +2.1
4,217,037 + Pf6N2E2_3621 0.22 +1.6
4,217,037 + Pf6N2E2_3621 0.22 +1.2
4,217,037 + Pf6N2E2_3621 0.22 +1.9
4,217,037 + Pf6N2E2_3621 0.22 +1.3
4,217,037 + Pf6N2E2_3621 0.22 +1.9
4,217,070 + Pf6N2E2_3621 0.28 +1.5
4,217,070 + Pf6N2E2_3621 0.28 -0.8
4,217,070 + Pf6N2E2_3621 0.28 +3.0
4,217,071 - Pf6N2E2_3621 0.28 +2.5
4,217,071 - Pf6N2E2_3621 0.28 +1.9
4,217,071 - Pf6N2E2_3621 0.28 +2.1
4,217,099 - Pf6N2E2_3621 0.32 +2.7
4,217,099 - Pf6N2E2_3621 0.32 +1.6
4,217,321 + Pf6N2E2_3621 0.69 +1.6
4,217,321 + Pf6N2E2_3621 0.69 +2.4
4,217,322 - Pf6N2E2_3621 0.69 +1.1
4,217,322 - Pf6N2E2_3621 0.69 +1.7
4,217,322 - Pf6N2E2_3621 0.69 +2.0
4,217,322 - Pf6N2E2_3621 0.69 +2.5
4,217,326 - Pf6N2E2_3621 0.69 +1.7
4,217,326 - Pf6N2E2_3621 0.69 -0.3
4,217,496 + +1.6
4,217,496 + +2.0
4,217,496 + +2.3
4,217,497 - +1.1
4,217,598 + +0.7
4,217,598 + -0.4
4,217,598 + -0.2
4,217,599 - +0.8
4,217,599 - -0.8
4,218,338 - +1.0
4,218,338 - +1.0
4,218,350 + -1.4
4,218,351 - -2.4
4,218,351 - -0.4
4,218,355 + -0.0
4,218,356 - +1.3
4,218,356 - +0.1
4,218,394 - +0.6
4,218,398 + +0.0
4,218,398 + +0.5
4,218,417 + -0.7

Or see this region's nucleotide sequence