Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3479 and Pf6N2E2_3480 are separated by 110 nucleotides Pf6N2E2_3480 and Pf6N2E2_3481 are separated by 141 nucleotides
Pf6N2E2_3479 - Niacin transporter NiaP, at 4,060,321 to 4,061,697
_3479
Pf6N2E2_3480 - Transcriptional regulator, ArsR family, at 4,061,808 to 4,062,542
_3480
Pf6N2E2_3481 - Transcriptional regulator, LysR family, at 4,062,684 to 4,063,613
_3481
Position (kb)
4061
4062
4063 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4060.859 kb on + strand, within Pf6N2E2_3479 at 4060.917 kb on - strand, within Pf6N2E2_3479 at 4061.195 kb on + strand, within Pf6N2E2_3479 at 4061.196 kb on - strand, within Pf6N2E2_3479 at 4061.256 kb on - strand, within Pf6N2E2_3479 at 4061.390 kb on + strand, within Pf6N2E2_3479 at 4061.390 kb on + strand, within Pf6N2E2_3479 at 4061.390 kb on + strand, within Pf6N2E2_3479 at 4061.390 kb on + strand, within Pf6N2E2_3479 at 4061.390 kb on + strand, within Pf6N2E2_3479 at 4061.390 kb on + strand, within Pf6N2E2_3479 at 4061.391 kb on - strand, within Pf6N2E2_3479 at 4061.391 kb on - strand, within Pf6N2E2_3479 at 4061.391 kb on - strand, within Pf6N2E2_3479 at 4061.391 kb on - strand, within Pf6N2E2_3479 at 4061.391 kb on - strand, within Pf6N2E2_3479 at 4061.391 kb on - strand, within Pf6N2E2_3479 at 4061.391 kb on - strand, within Pf6N2E2_3479 at 4061.530 kb on - strand, within Pf6N2E2_3479 at 4061.681 kb on + strand at 4061.681 kb on + strand at 4061.767 kb on + strand at 4061.767 kb on + strand at 4061.767 kb on + strand at 4061.767 kb on + strand at 4061.768 kb on - strand at 4061.809 kb on + strand at 4061.809 kb on + strand at 4061.809 kb on + strand at 4061.809 kb on + strand at 4061.809 kb on + strand at 4061.810 kb on - strand at 4062.134 kb on - strand, within Pf6N2E2_3480 at 4062.544 kb on + strand at 4062.544 kb on + strand at 4062.544 kb on + strand at 4062.544 kb on + strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.545 kb on - strand at 4062.572 kb on - strand at 4062.572 kb on - strand at 4062.595 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.598 kb on + strand at 4062.599 kb on - strand at 4062.599 kb on - strand at 4062.599 kb on - strand at 4062.599 kb on - strand at 4062.599 kb on - strand at 4062.599 kb on - strand at 4062.599 kb on - strand at 4062.599 kb on - strand at 4062.600 kb on + strand at 4062.600 kb on + strand at 4062.600 kb on + strand at 4062.600 kb on + strand at 4062.600 kb on + strand at 4062.600 kb on + strand at 4062.601 kb on - strand at 4062.601 kb on - strand at 4062.685 kb on + strand at 4062.777 kb on + strand, within Pf6N2E2_3481 at 4062.777 kb on + strand, within Pf6N2E2_3481 at 4062.777 kb on + strand, within Pf6N2E2_3481 at 4062.777 kb on + strand, within Pf6N2E2_3481 at 4062.777 kb on + strand, within Pf6N2E2_3481 at 4062.778 kb on - strand, within Pf6N2E2_3481 at 4062.778 kb on - strand, within Pf6N2E2_3481 at 4062.778 kb on - strand, within Pf6N2E2_3481 at 4062.778 kb on - strand, within Pf6N2E2_3481 at 4062.778 kb on - strand, within Pf6N2E2_3481 at 4062.778 kb on - strand, within Pf6N2E2_3481 at 4062.778 kb on - strand, within Pf6N2E2_3481 at 4062.893 kb on + strand, within Pf6N2E2_3481 at 4062.896 kb on - strand, within Pf6N2E2_3481 at 4063.036 kb on + strand, within Pf6N2E2_3481 at 4063.036 kb on + strand, within Pf6N2E2_3481 at 4063.036 kb on + strand, within Pf6N2E2_3481 at 4063.036 kb on + strand, within Pf6N2E2_3481 at 4063.036 kb on + strand, within Pf6N2E2_3481 at 4063.036 kb on + strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.037 kb on - strand, within Pf6N2E2_3481 at 4063.099 kb on + strand, within Pf6N2E2_3481 at 4063.099 kb on + strand, within Pf6N2E2_3481 at 4063.411 kb on + strand, within Pf6N2E2_3481
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 4,060,859 + Pf6N2E2_3479 0.39 +0.6 4,060,917 - Pf6N2E2_3479 0.43 -0.4 4,061,195 + Pf6N2E2_3479 0.63 +0.1 4,061,196 - Pf6N2E2_3479 0.64 -0.1 4,061,256 - Pf6N2E2_3479 0.68 +1.0 4,061,390 + Pf6N2E2_3479 0.78 -0.7 4,061,390 + Pf6N2E2_3479 0.78 +0.4 4,061,390 + Pf6N2E2_3479 0.78 -0.3 4,061,390 + Pf6N2E2_3479 0.78 +0.7 4,061,390 + Pf6N2E2_3479 0.78 +0.2 4,061,390 + Pf6N2E2_3479 0.78 -2.4 4,061,391 - Pf6N2E2_3479 0.78 +0.6 4,061,391 - Pf6N2E2_3479 0.78 +0.7 4,061,391 - Pf6N2E2_3479 0.78 -0.4 4,061,391 - Pf6N2E2_3479 0.78 +0.4 4,061,391 - Pf6N2E2_3479 0.78 -1.7 4,061,391 - Pf6N2E2_3479 0.78 -2.5 4,061,391 - Pf6N2E2_3479 0.78 -0.7 4,061,530 - Pf6N2E2_3479 0.88 -1.0 4,061,681 + -0.0 4,061,681 + +1.1 4,061,767 + +1.4 4,061,767 + +0.6 4,061,767 + -1.4 4,061,767 + +0.5 4,061,768 - +0.2 4,061,809 + +0.2 4,061,809 + +0.2 4,061,809 + +0.1 4,061,809 + +3.7 4,061,809 + -0.1 4,061,810 - +0.1 4,062,134 - Pf6N2E2_3480 0.44 -2.4 4,062,544 + +0.9 4,062,544 + +0.3 4,062,544 + +1.2 4,062,544 + +2.1 4,062,545 - -0.0 4,062,545 - -0.7 4,062,545 - -1.1 4,062,545 - -0.5 4,062,545 - -0.7 4,062,545 - +0.4 4,062,545 - -0.4 4,062,545 - -0.8 4,062,545 - -0.4 4,062,545 - -0.6 4,062,545 - +0.5 4,062,572 - -0.2 4,062,572 - -0.9 4,062,595 + +0.2 4,062,598 + +1.0 4,062,598 + +0.6 4,062,598 + +0.7 4,062,598 + +0.8 4,062,598 + -0.1 4,062,598 + +0.3 4,062,598 + +2.5 4,062,598 + -1.9 4,062,598 + -0.3 4,062,598 + +1.5 4,062,599 - +2.2 4,062,599 - -0.5 4,062,599 - -1.8 4,062,599 - +1.1 4,062,599 - +0.1 4,062,599 - +0.4 4,062,599 - -0.3 4,062,599 - -0.9 4,062,600 + -1.4 4,062,600 + -0.1 4,062,600 + +0.6 4,062,600 + +0.2 4,062,600 + +0.5 4,062,600 + +0.6 4,062,601 - -0.0 4,062,601 - +0.8 4,062,685 + -0.9 4,062,777 + Pf6N2E2_3481 0.10 -1.7 4,062,777 + Pf6N2E2_3481 0.10 -0.9 4,062,777 + Pf6N2E2_3481 0.10 -0.3 4,062,777 + Pf6N2E2_3481 0.10 -1.1 4,062,777 + Pf6N2E2_3481 0.10 -1.5 4,062,778 - Pf6N2E2_3481 0.10 +1.1 4,062,778 - Pf6N2E2_3481 0.10 -1.7 4,062,778 - Pf6N2E2_3481 0.10 +0.2 4,062,778 - Pf6N2E2_3481 0.10 +0.2 4,062,778 - Pf6N2E2_3481 0.10 -1.2 4,062,778 - Pf6N2E2_3481 0.10 -0.9 4,062,778 - Pf6N2E2_3481 0.10 +0.4 4,062,893 + Pf6N2E2_3481 0.22 -0.3 4,062,896 - Pf6N2E2_3481 0.23 -1.8 4,063,036 + Pf6N2E2_3481 0.38 -1.2 4,063,036 + Pf6N2E2_3481 0.38 -0.7 4,063,036 + Pf6N2E2_3481 0.38 +0.1 4,063,036 + Pf6N2E2_3481 0.38 -0.2 4,063,036 + Pf6N2E2_3481 0.38 +1.3 4,063,036 + Pf6N2E2_3481 0.38 +1.9 4,063,037 - Pf6N2E2_3481 0.38 -1.5 4,063,037 - Pf6N2E2_3481 0.38 +1.2 4,063,037 - Pf6N2E2_3481 0.38 -0.8 4,063,037 - Pf6N2E2_3481 0.38 +0.6 4,063,037 - Pf6N2E2_3481 0.38 -0.5 4,063,037 - Pf6N2E2_3481 0.38 -0.7 4,063,037 - Pf6N2E2_3481 0.38 -2.3 4,063,037 - Pf6N2E2_3481 0.38 -1.0 4,063,037 - Pf6N2E2_3481 0.38 +1.2 4,063,099 + Pf6N2E2_3481 0.45 +1.5 4,063,099 + Pf6N2E2_3481 0.45 +1.1 4,063,411 + Pf6N2E2_3481 0.78 +0.1
Or see this region's nucleotide sequence