Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3419

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3418 and Pf6N2E2_3419 are separated by 24 nucleotidesPf6N2E2_3419 and Pf6N2E2_3420 are separated by 232 nucleotides Pf6N2E2_3418 - Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family, at 3,970,869 to 3,975,452 _3418 Pf6N2E2_3419 - Channel-forming transporter/cytolysins activator of TpsB family, at 3,975,477 to 3,977,126 _3419 Pf6N2E2_3420 - Proline iminopeptidase (EC 3.4.11.5), at 3,977,359 to 3,978,258 _3420 Position (kb) 3975 3976 3977 3978Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3974.644 kb on + strand, within Pf6N2E2_3418at 3974.644 kb on + strand, within Pf6N2E2_3418at 3974.645 kb on - strand, within Pf6N2E2_3418at 3974.645 kb on - strand, within Pf6N2E2_3418at 3974.727 kb on - strand, within Pf6N2E2_3418at 3975.190 kb on + strandat 3975.190 kb on + strandat 3975.190 kb on + strandat 3975.191 kb on - strandat 3975.191 kb on - strandat 3975.478 kb on + strandat 3975.486 kb on + strandat 3975.486 kb on + strandat 3975.486 kb on + strandat 3975.486 kb on + strandat 3975.487 kb on - strandat 3975.487 kb on - strandat 3975.487 kb on - strandat 3975.487 kb on - strandat 3975.487 kb on - strandat 3975.640 kb on + strandat 3975.641 kb on - strandat 3975.641 kb on - strandat 3975.922 kb on + strand, within Pf6N2E2_3419at 3975.940 kb on + strand, within Pf6N2E2_3419at 3975.940 kb on + strand, within Pf6N2E2_3419at 3975.940 kb on + strand, within Pf6N2E2_3419at 3975.940 kb on + strand, within Pf6N2E2_3419at 3976.010 kb on + strand, within Pf6N2E2_3419at 3976.011 kb on - strand, within Pf6N2E2_3419at 3976.150 kb on + strand, within Pf6N2E2_3419at 3976.150 kb on + strand, within Pf6N2E2_3419at 3976.297 kb on + strand, within Pf6N2E2_3419at 3976.297 kb on + strand, within Pf6N2E2_3419at 3976.297 kb on + strand, within Pf6N2E2_3419at 3976.298 kb on - strand, within Pf6N2E2_3419at 3976.298 kb on - strand, within Pf6N2E2_3419at 3976.303 kb on + strand, within Pf6N2E2_3419at 3976.303 kb on + strand, within Pf6N2E2_3419at 3976.303 kb on + strand, within Pf6N2E2_3419at 3976.303 kb on + strand, within Pf6N2E2_3419at 3976.304 kb on - strand, within Pf6N2E2_3419at 3976.304 kb on - strand, within Pf6N2E2_3419at 3976.336 kb on + strand, within Pf6N2E2_3419at 3976.336 kb on + strand, within Pf6N2E2_3419at 3976.336 kb on + strand, within Pf6N2E2_3419at 3976.337 kb on - strand, within Pf6N2E2_3419at 3976.337 kb on - strand, within Pf6N2E2_3419at 3976.337 kb on - strand, within Pf6N2E2_3419at 3976.339 kb on + strand, within Pf6N2E2_3419at 3976.339 kb on + strand, within Pf6N2E2_3419at 3976.339 kb on + strand, within Pf6N2E2_3419at 3976.340 kb on - strand, within Pf6N2E2_3419at 3976.340 kb on - strand, within Pf6N2E2_3419at 3976.340 kb on - strand, within Pf6N2E2_3419at 3976.487 kb on + strand, within Pf6N2E2_3419at 3976.789 kb on + strand, within Pf6N2E2_3419at 3976.789 kb on + strand, within Pf6N2E2_3419at 3976.822 kb on + strand, within Pf6N2E2_3419at 3976.823 kb on - strand, within Pf6N2E2_3419at 3976.823 kb on - strand, within Pf6N2E2_3419at 3976.853 kb on + strand, within Pf6N2E2_3419at 3976.885 kb on + strand, within Pf6N2E2_3419at 3976.886 kb on - strand, within Pf6N2E2_3419at 3976.886 kb on - strand, within Pf6N2E2_3419at 3976.886 kb on - strand, within Pf6N2E2_3419at 3977.131 kb on - strandat 3977.251 kb on - strandat 3977.361 kb on - strandat 3977.427 kb on + strandat 3977.427 kb on + strandat 3977.427 kb on + strandat 3977.480 kb on + strand, within Pf6N2E2_3420at 3977.481 kb on - strand, within Pf6N2E2_3420at 3977.481 kb on - strand, within Pf6N2E2_3420at 3977.481 kb on - strand, within Pf6N2E2_3420at 3977.481 kb on - strand, within Pf6N2E2_3420at 3977.513 kb on + strand, within Pf6N2E2_3420at 3977.627 kb on + strand, within Pf6N2E2_3420at 3977.661 kb on + strand, within Pf6N2E2_3420at 3977.662 kb on - strand, within Pf6N2E2_3420at 3977.712 kb on - strand, within Pf6N2E2_3420at 3977.712 kb on - strand, within Pf6N2E2_3420at 3977.735 kb on + strand, within Pf6N2E2_3420at 3977.800 kb on + strand, within Pf6N2E2_3420at 3977.844 kb on + strand, within Pf6N2E2_3420at 3977.844 kb on + strand, within Pf6N2E2_3420at 3977.844 kb on + strand, within Pf6N2E2_3420at 3977.845 kb on - strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.948 kb on + strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.949 kb on - strand, within Pf6N2E2_3420at 3977.969 kb on + strand, within Pf6N2E2_3420at 3978.045 kb on + strand, within Pf6N2E2_3420at 3978.045 kb on + strand, within Pf6N2E2_3420at 3978.045 kb on + strand, within Pf6N2E2_3420at 3978.046 kb on - strand, within Pf6N2E2_3420at 3978.072 kb on - strand, within Pf6N2E2_3420at 3978.103 kb on - strand, within Pf6N2E2_3420at 3978.122 kb on + strand, within Pf6N2E2_3420at 3978.122 kb on + strand, within Pf6N2E2_3420at 3978.122 kb on + strand, within Pf6N2E2_3420at 3978.123 kb on - strand, within Pf6N2E2_3420at 3978.123 kb on - strand, within Pf6N2E2_3420at 3978.123 kb on - strand, within Pf6N2E2_3420at 3978.123 kb on - strand, within Pf6N2E2_3420

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,974,644 + Pf6N2E2_3418 0.82 -0.5
3,974,644 + Pf6N2E2_3418 0.82 +1.2
3,974,645 - Pf6N2E2_3418 0.82 -2.3
3,974,645 - Pf6N2E2_3418 0.82 +1.5
3,974,727 - Pf6N2E2_3418 0.84 -0.6
3,975,190 + +0.1
3,975,190 + +0.8
3,975,190 + -1.1
3,975,191 - +0.2
3,975,191 - -0.0
3,975,478 + -0.7
3,975,486 + +2.7
3,975,486 + +0.9
3,975,486 + +0.6
3,975,486 + -1.3
3,975,487 - +1.3
3,975,487 - +0.0
3,975,487 - -1.0
3,975,487 - -0.5
3,975,487 - +0.0
3,975,640 + -0.4
3,975,641 - -2.4
3,975,641 - -0.2
3,975,922 + Pf6N2E2_3419 0.27 +0.6
3,975,940 + Pf6N2E2_3419 0.28 +0.6
3,975,940 + Pf6N2E2_3419 0.28 +0.8
3,975,940 + Pf6N2E2_3419 0.28 +1.2
3,975,940 + Pf6N2E2_3419 0.28 +0.2
3,976,010 + Pf6N2E2_3419 0.32 -0.5
3,976,011 - Pf6N2E2_3419 0.32 -1.7
3,976,150 + Pf6N2E2_3419 0.41 -1.2
3,976,150 + Pf6N2E2_3419 0.41 -0.5
3,976,297 + Pf6N2E2_3419 0.50 +0.2
3,976,297 + Pf6N2E2_3419 0.50 -0.8
3,976,297 + Pf6N2E2_3419 0.50 +1.0
3,976,298 - Pf6N2E2_3419 0.50 -0.1
3,976,298 - Pf6N2E2_3419 0.50 -1.9
3,976,303 + Pf6N2E2_3419 0.50 -0.6
3,976,303 + Pf6N2E2_3419 0.50 -0.4
3,976,303 + Pf6N2E2_3419 0.50 +0.6
3,976,303 + Pf6N2E2_3419 0.50 -0.1
3,976,304 - Pf6N2E2_3419 0.50 +1.4
3,976,304 - Pf6N2E2_3419 0.50 +1.4
3,976,336 + Pf6N2E2_3419 0.52 -0.3
3,976,336 + Pf6N2E2_3419 0.52 -0.7
3,976,336 + Pf6N2E2_3419 0.52 -1.7
3,976,337 - Pf6N2E2_3419 0.52 +0.2
3,976,337 - Pf6N2E2_3419 0.52 +0.8
3,976,337 - Pf6N2E2_3419 0.52 +1.2
3,976,339 + Pf6N2E2_3419 0.52 +0.1
3,976,339 + Pf6N2E2_3419 0.52 +0.9
3,976,339 + Pf6N2E2_3419 0.52 -1.5
3,976,340 - Pf6N2E2_3419 0.52 +1.8
3,976,340 - Pf6N2E2_3419 0.52 +0.3
3,976,340 - Pf6N2E2_3419 0.52 +1.0
3,976,487 + Pf6N2E2_3419 0.61 -1.3
3,976,789 + Pf6N2E2_3419 0.80 +1.2
3,976,789 + Pf6N2E2_3419 0.80 -1.4
3,976,822 + Pf6N2E2_3419 0.82 +1.0
3,976,823 - Pf6N2E2_3419 0.82 +3.1
3,976,823 - Pf6N2E2_3419 0.82 +0.4
3,976,853 + Pf6N2E2_3419 0.83 +1.8
3,976,885 + Pf6N2E2_3419 0.85 -2.1
3,976,886 - Pf6N2E2_3419 0.85 +1.3
3,976,886 - Pf6N2E2_3419 0.85 -0.7
3,976,886 - Pf6N2E2_3419 0.85 +0.6
3,977,131 - -1.1
3,977,251 - -1.9
3,977,361 - +0.0
3,977,427 + +0.3
3,977,427 + +1.8
3,977,427 + +0.5
3,977,480 + Pf6N2E2_3420 0.13 +0.0
3,977,481 - Pf6N2E2_3420 0.14 +0.6
3,977,481 - Pf6N2E2_3420 0.14 +0.1
3,977,481 - Pf6N2E2_3420 0.14 +0.6
3,977,481 - Pf6N2E2_3420 0.14 +0.8
3,977,513 + Pf6N2E2_3420 0.17 -0.1
3,977,627 + Pf6N2E2_3420 0.30 -0.7
3,977,661 + Pf6N2E2_3420 0.34 -1.0
3,977,662 - Pf6N2E2_3420 0.34 +1.5
3,977,712 - Pf6N2E2_3420 0.39 -0.2
3,977,712 - Pf6N2E2_3420 0.39 +0.4
3,977,735 + Pf6N2E2_3420 0.42 +0.4
3,977,800 + Pf6N2E2_3420 0.49 -1.0
3,977,844 + Pf6N2E2_3420 0.54 -1.3
3,977,844 + Pf6N2E2_3420 0.54 +0.2
3,977,844 + Pf6N2E2_3420 0.54 +0.4
3,977,845 - Pf6N2E2_3420 0.54 -2.0
3,977,948 + Pf6N2E2_3420 0.65 -0.2
3,977,948 + Pf6N2E2_3420 0.65 -1.5
3,977,948 + Pf6N2E2_3420 0.65 +0.1
3,977,948 + Pf6N2E2_3420 0.65 +0.6
3,977,948 + Pf6N2E2_3420 0.65 +0.5
3,977,948 + Pf6N2E2_3420 0.65 +0.2
3,977,948 + Pf6N2E2_3420 0.65 -1.1
3,977,948 + Pf6N2E2_3420 0.65 -0.7
3,977,948 + Pf6N2E2_3420 0.65 +0.5
3,977,948 + Pf6N2E2_3420 0.65 -1.7
3,977,949 - Pf6N2E2_3420 0.66 -1.0
3,977,949 - Pf6N2E2_3420 0.66 -0.4
3,977,949 - Pf6N2E2_3420 0.66 -0.3
3,977,949 - Pf6N2E2_3420 0.66 +1.0
3,977,949 - Pf6N2E2_3420 0.66 -0.9
3,977,949 - Pf6N2E2_3420 0.66 +0.3
3,977,949 - Pf6N2E2_3420 0.66 -0.8
3,977,949 - Pf6N2E2_3420 0.66 -1.0
3,977,949 - Pf6N2E2_3420 0.66 +1.8
3,977,949 - Pf6N2E2_3420 0.66 -0.0
3,977,949 - Pf6N2E2_3420 0.66 -1.8
3,977,949 - Pf6N2E2_3420 0.66 +0.6
3,977,949 - Pf6N2E2_3420 0.66 +0.1
3,977,969 + Pf6N2E2_3420 0.68 -0.7
3,978,045 + Pf6N2E2_3420 0.76 -0.0
3,978,045 + Pf6N2E2_3420 0.76 -0.1
3,978,045 + Pf6N2E2_3420 0.76 -0.4
3,978,046 - Pf6N2E2_3420 0.76 -1.5
3,978,072 - Pf6N2E2_3420 0.79 -0.6
3,978,103 - Pf6N2E2_3420 0.83 +0.3
3,978,122 + Pf6N2E2_3420 0.85 -0.1
3,978,122 + Pf6N2E2_3420 0.85 +0.2
3,978,122 + Pf6N2E2_3420 0.85 +0.1
3,978,123 - Pf6N2E2_3420 0.85 -0.5
3,978,123 - Pf6N2E2_3420 0.85 +0.5
3,978,123 - Pf6N2E2_3420 0.85 -0.1
3,978,123 - Pf6N2E2_3420 0.85 -0.6

Or see this region's nucleotide sequence