Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3418 and Pf6N2E2_3419 are separated by 24 nucleotides Pf6N2E2_3419 and Pf6N2E2_3420 are separated by 232 nucleotides
Pf6N2E2_3418 - Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family, at 3,970,869 to 3,975,452
_3418
Pf6N2E2_3419 - Channel-forming transporter/cytolysins activator of TpsB family, at 3,975,477 to 3,977,126
_3419
Pf6N2E2_3420 - Proline iminopeptidase (EC 3.4.11.5), at 3,977,359 to 3,978,258
_3420
Position (kb)
3975
3976
3977
3978 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3974.644 kb on + strand, within Pf6N2E2_3418 at 3974.644 kb on + strand, within Pf6N2E2_3418 at 3974.645 kb on - strand, within Pf6N2E2_3418 at 3974.645 kb on - strand, within Pf6N2E2_3418 at 3974.727 kb on - strand, within Pf6N2E2_3418 at 3975.190 kb on + strand at 3975.190 kb on + strand at 3975.190 kb on + strand at 3975.191 kb on - strand at 3975.191 kb on - strand at 3975.478 kb on + strand at 3975.486 kb on + strand at 3975.486 kb on + strand at 3975.486 kb on + strand at 3975.486 kb on + strand at 3975.487 kb on - strand at 3975.487 kb on - strand at 3975.487 kb on - strand at 3975.487 kb on - strand at 3975.487 kb on - strand at 3975.640 kb on + strand at 3975.641 kb on - strand at 3975.641 kb on - strand at 3975.922 kb on + strand, within Pf6N2E2_3419 at 3975.940 kb on + strand, within Pf6N2E2_3419 at 3975.940 kb on + strand, within Pf6N2E2_3419 at 3975.940 kb on + strand, within Pf6N2E2_3419 at 3975.940 kb on + strand, within Pf6N2E2_3419 at 3976.010 kb on + strand, within Pf6N2E2_3419 at 3976.011 kb on - strand, within Pf6N2E2_3419 at 3976.150 kb on + strand, within Pf6N2E2_3419 at 3976.150 kb on + strand, within Pf6N2E2_3419 at 3976.297 kb on + strand, within Pf6N2E2_3419 at 3976.297 kb on + strand, within Pf6N2E2_3419 at 3976.297 kb on + strand, within Pf6N2E2_3419 at 3976.298 kb on - strand, within Pf6N2E2_3419 at 3976.298 kb on - strand, within Pf6N2E2_3419 at 3976.303 kb on + strand, within Pf6N2E2_3419 at 3976.303 kb on + strand, within Pf6N2E2_3419 at 3976.303 kb on + strand, within Pf6N2E2_3419 at 3976.303 kb on + strand, within Pf6N2E2_3419 at 3976.304 kb on - strand, within Pf6N2E2_3419 at 3976.304 kb on - strand, within Pf6N2E2_3419 at 3976.336 kb on + strand, within Pf6N2E2_3419 at 3976.336 kb on + strand, within Pf6N2E2_3419 at 3976.336 kb on + strand, within Pf6N2E2_3419 at 3976.337 kb on - strand, within Pf6N2E2_3419 at 3976.337 kb on - strand, within Pf6N2E2_3419 at 3976.337 kb on - strand, within Pf6N2E2_3419 at 3976.339 kb on + strand, within Pf6N2E2_3419 at 3976.339 kb on + strand, within Pf6N2E2_3419 at 3976.339 kb on + strand, within Pf6N2E2_3419 at 3976.340 kb on - strand, within Pf6N2E2_3419 at 3976.340 kb on - strand, within Pf6N2E2_3419 at 3976.340 kb on - strand, within Pf6N2E2_3419 at 3976.487 kb on + strand, within Pf6N2E2_3419 at 3976.789 kb on + strand, within Pf6N2E2_3419 at 3976.789 kb on + strand, within Pf6N2E2_3419 at 3976.822 kb on + strand, within Pf6N2E2_3419 at 3976.823 kb on - strand, within Pf6N2E2_3419 at 3976.823 kb on - strand, within Pf6N2E2_3419 at 3976.853 kb on + strand, within Pf6N2E2_3419 at 3976.885 kb on + strand, within Pf6N2E2_3419 at 3976.886 kb on - strand, within Pf6N2E2_3419 at 3976.886 kb on - strand, within Pf6N2E2_3419 at 3976.886 kb on - strand, within Pf6N2E2_3419 at 3977.131 kb on - strand at 3977.251 kb on - strand at 3977.361 kb on - strand at 3977.427 kb on + strand at 3977.427 kb on + strand at 3977.427 kb on + strand at 3977.480 kb on + strand, within Pf6N2E2_3420 at 3977.481 kb on - strand, within Pf6N2E2_3420 at 3977.481 kb on - strand, within Pf6N2E2_3420 at 3977.481 kb on - strand, within Pf6N2E2_3420 at 3977.481 kb on - strand, within Pf6N2E2_3420 at 3977.513 kb on + strand, within Pf6N2E2_3420 at 3977.627 kb on + strand, within Pf6N2E2_3420 at 3977.661 kb on + strand, within Pf6N2E2_3420 at 3977.662 kb on - strand, within Pf6N2E2_3420 at 3977.712 kb on - strand, within Pf6N2E2_3420 at 3977.712 kb on - strand, within Pf6N2E2_3420 at 3977.735 kb on + strand, within Pf6N2E2_3420 at 3977.800 kb on + strand, within Pf6N2E2_3420 at 3977.844 kb on + strand, within Pf6N2E2_3420 at 3977.844 kb on + strand, within Pf6N2E2_3420 at 3977.844 kb on + strand, within Pf6N2E2_3420 at 3977.845 kb on - strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.948 kb on + strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.949 kb on - strand, within Pf6N2E2_3420 at 3977.969 kb on + strand, within Pf6N2E2_3420 at 3978.045 kb on + strand, within Pf6N2E2_3420 at 3978.045 kb on + strand, within Pf6N2E2_3420 at 3978.045 kb on + strand, within Pf6N2E2_3420 at 3978.046 kb on - strand, within Pf6N2E2_3420 at 3978.072 kb on - strand, within Pf6N2E2_3420 at 3978.103 kb on - strand, within Pf6N2E2_3420 at 3978.122 kb on + strand, within Pf6N2E2_3420 at 3978.122 kb on + strand, within Pf6N2E2_3420 at 3978.122 kb on + strand, within Pf6N2E2_3420 at 3978.123 kb on - strand, within Pf6N2E2_3420 at 3978.123 kb on - strand, within Pf6N2E2_3420 at 3978.123 kb on - strand, within Pf6N2E2_3420 at 3978.123 kb on - strand, within Pf6N2E2_3420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,974,644 + Pf6N2E2_3418 0.82 -0.5 3,974,644 + Pf6N2E2_3418 0.82 +1.2 3,974,645 - Pf6N2E2_3418 0.82 -2.3 3,974,645 - Pf6N2E2_3418 0.82 +1.5 3,974,727 - Pf6N2E2_3418 0.84 -0.6 3,975,190 + +0.1 3,975,190 + +0.8 3,975,190 + -1.1 3,975,191 - +0.2 3,975,191 - -0.0 3,975,478 + -0.7 3,975,486 + +2.7 3,975,486 + +0.9 3,975,486 + +0.6 3,975,486 + -1.3 3,975,487 - +1.3 3,975,487 - +0.0 3,975,487 - -1.0 3,975,487 - -0.5 3,975,487 - +0.0 3,975,640 + -0.4 3,975,641 - -2.4 3,975,641 - -0.2 3,975,922 + Pf6N2E2_3419 0.27 +0.6 3,975,940 + Pf6N2E2_3419 0.28 +0.6 3,975,940 + Pf6N2E2_3419 0.28 +0.8 3,975,940 + Pf6N2E2_3419 0.28 +1.2 3,975,940 + Pf6N2E2_3419 0.28 +0.2 3,976,010 + Pf6N2E2_3419 0.32 -0.5 3,976,011 - Pf6N2E2_3419 0.32 -1.7 3,976,150 + Pf6N2E2_3419 0.41 -1.2 3,976,150 + Pf6N2E2_3419 0.41 -0.5 3,976,297 + Pf6N2E2_3419 0.50 +0.2 3,976,297 + Pf6N2E2_3419 0.50 -0.8 3,976,297 + Pf6N2E2_3419 0.50 +1.0 3,976,298 - Pf6N2E2_3419 0.50 -0.1 3,976,298 - Pf6N2E2_3419 0.50 -1.9 3,976,303 + Pf6N2E2_3419 0.50 -0.6 3,976,303 + Pf6N2E2_3419 0.50 -0.4 3,976,303 + Pf6N2E2_3419 0.50 +0.6 3,976,303 + Pf6N2E2_3419 0.50 -0.1 3,976,304 - Pf6N2E2_3419 0.50 +1.4 3,976,304 - Pf6N2E2_3419 0.50 +1.4 3,976,336 + Pf6N2E2_3419 0.52 -0.3 3,976,336 + Pf6N2E2_3419 0.52 -0.7 3,976,336 + Pf6N2E2_3419 0.52 -1.7 3,976,337 - Pf6N2E2_3419 0.52 +0.2 3,976,337 - Pf6N2E2_3419 0.52 +0.8 3,976,337 - Pf6N2E2_3419 0.52 +1.2 3,976,339 + Pf6N2E2_3419 0.52 +0.1 3,976,339 + Pf6N2E2_3419 0.52 +0.9 3,976,339 + Pf6N2E2_3419 0.52 -1.5 3,976,340 - Pf6N2E2_3419 0.52 +1.8 3,976,340 - Pf6N2E2_3419 0.52 +0.3 3,976,340 - Pf6N2E2_3419 0.52 +1.0 3,976,487 + Pf6N2E2_3419 0.61 -1.3 3,976,789 + Pf6N2E2_3419 0.80 +1.2 3,976,789 + Pf6N2E2_3419 0.80 -1.4 3,976,822 + Pf6N2E2_3419 0.82 +1.0 3,976,823 - Pf6N2E2_3419 0.82 +3.1 3,976,823 - Pf6N2E2_3419 0.82 +0.4 3,976,853 + Pf6N2E2_3419 0.83 +1.8 3,976,885 + Pf6N2E2_3419 0.85 -2.1 3,976,886 - Pf6N2E2_3419 0.85 +1.3 3,976,886 - Pf6N2E2_3419 0.85 -0.7 3,976,886 - Pf6N2E2_3419 0.85 +0.6 3,977,131 - -1.1 3,977,251 - -1.9 3,977,361 - +0.0 3,977,427 + +0.3 3,977,427 + +1.8 3,977,427 + +0.5 3,977,480 + Pf6N2E2_3420 0.13 +0.0 3,977,481 - Pf6N2E2_3420 0.14 +0.6 3,977,481 - Pf6N2E2_3420 0.14 +0.1 3,977,481 - Pf6N2E2_3420 0.14 +0.6 3,977,481 - Pf6N2E2_3420 0.14 +0.8 3,977,513 + Pf6N2E2_3420 0.17 -0.1 3,977,627 + Pf6N2E2_3420 0.30 -0.7 3,977,661 + Pf6N2E2_3420 0.34 -1.0 3,977,662 - Pf6N2E2_3420 0.34 +1.5 3,977,712 - Pf6N2E2_3420 0.39 -0.2 3,977,712 - Pf6N2E2_3420 0.39 +0.4 3,977,735 + Pf6N2E2_3420 0.42 +0.4 3,977,800 + Pf6N2E2_3420 0.49 -1.0 3,977,844 + Pf6N2E2_3420 0.54 -1.3 3,977,844 + Pf6N2E2_3420 0.54 +0.2 3,977,844 + Pf6N2E2_3420 0.54 +0.4 3,977,845 - Pf6N2E2_3420 0.54 -2.0 3,977,948 + Pf6N2E2_3420 0.65 -0.2 3,977,948 + Pf6N2E2_3420 0.65 -1.5 3,977,948 + Pf6N2E2_3420 0.65 +0.1 3,977,948 + Pf6N2E2_3420 0.65 +0.6 3,977,948 + Pf6N2E2_3420 0.65 +0.5 3,977,948 + Pf6N2E2_3420 0.65 +0.2 3,977,948 + Pf6N2E2_3420 0.65 -1.1 3,977,948 + Pf6N2E2_3420 0.65 -0.7 3,977,948 + Pf6N2E2_3420 0.65 +0.5 3,977,948 + Pf6N2E2_3420 0.65 -1.7 3,977,949 - Pf6N2E2_3420 0.66 -1.0 3,977,949 - Pf6N2E2_3420 0.66 -0.4 3,977,949 - Pf6N2E2_3420 0.66 -0.3 3,977,949 - Pf6N2E2_3420 0.66 +1.0 3,977,949 - Pf6N2E2_3420 0.66 -0.9 3,977,949 - Pf6N2E2_3420 0.66 +0.3 3,977,949 - Pf6N2E2_3420 0.66 -0.8 3,977,949 - Pf6N2E2_3420 0.66 -1.0 3,977,949 - Pf6N2E2_3420 0.66 +1.8 3,977,949 - Pf6N2E2_3420 0.66 -0.0 3,977,949 - Pf6N2E2_3420 0.66 -1.8 3,977,949 - Pf6N2E2_3420 0.66 +0.6 3,977,949 - Pf6N2E2_3420 0.66 +0.1 3,977,969 + Pf6N2E2_3420 0.68 -0.7 3,978,045 + Pf6N2E2_3420 0.76 -0.0 3,978,045 + Pf6N2E2_3420 0.76 -0.1 3,978,045 + Pf6N2E2_3420 0.76 -0.4 3,978,046 - Pf6N2E2_3420 0.76 -1.5 3,978,072 - Pf6N2E2_3420 0.79 -0.6 3,978,103 - Pf6N2E2_3420 0.83 +0.3 3,978,122 + Pf6N2E2_3420 0.85 -0.1 3,978,122 + Pf6N2E2_3420 0.85 +0.2 3,978,122 + Pf6N2E2_3420 0.85 +0.1 3,978,123 - Pf6N2E2_3420 0.85 -0.5 3,978,123 - Pf6N2E2_3420 0.85 +0.5 3,978,123 - Pf6N2E2_3420 0.85 -0.1 3,978,123 - Pf6N2E2_3420 0.85 -0.6
Or see this region's nucleotide sequence